Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38244 * 119.88728 * 2 1 4 4 C 1.37978 * 120.23352 * 180.27646 * 3 2 1 5 5 C 1.39687 * 120.00356 * 359.72478 * 4 3 2 6 6 C 1.43198 * 120.11864 * 179.97438 * 5 4 3 7 7 N 4.80238 * 137.06641 * 0.30500 * 3 1 2 8 8 C 1.39502 * 119.76916 * 0.02562 * 5 4 3 9 9 C 1.38682 * 119.76787 * 359.97438 * 8 5 4 10 10 N 1.39748 * 120.00395 * 180.02562 * 9 8 5 11 11 C 1.34778 * 120.00066 * 336.04721 * 10 9 8 12 12 O 1.21379 * 119.99794 * 354.12594 * 11 10 9 13 13 C 1.49351 * 120.00133 * 174.39918 * 11 10 9 14 14 O 1.21356 * 120.00101 * 0.44836 * 13 11 10 15 15 N 1.34785 * 119.99916 * 180.43916 * 13 11 10 16 16 C 1.46491 * 120.00099 * 354.43144 * 15 13 11 17 17 C 1.46500 * 119.99735 * 174.42686 * 15 13 11 18 18 H 1.08998 * 109.47395 * 0.02562 * 17 15 13 19 19 C 1.52995 * 109.46842 * 120.00258 * 17 15 13 20 20 C 1.50701 * 109.47274 * 240.00302 * 17 15 13 21 21 H 1.08000 * 119.99399 * 0.02562 * 20 17 15 22 22 C 1.37872 * 119.99937 * 180.02562 * 20 17 15 23 23 N 1.31518 * 119.99896 * 179.97438 * 22 20 17 24 24 Si 1.86804 * 120.00090 * 0.02562 * 22 20 17 25 25 H 1.48497 * 109.46985 * 89.99785 * 24 22 20 26 26 H 1.48499 * 109.46836 * 209.99821 * 24 22 20 27 27 H 1.48497 * 109.47128 * 329.99603 * 24 22 20 28 28 H 1.08998 * 109.46937 * 270.27157 * 1 2 3 29 29 H 1.08999 * 109.47079 * 30.27895 * 1 2 3 30 30 H 1.08997 * 109.47262 * 150.27571 * 1 2 3 31 31 H 1.08000 * 119.87745 * 0.02562 * 3 2 1 32 32 H 1.07993 * 119.99865 * 179.70102 * 4 3 2 33 33 H 1.07998 * 120.11938 * 180.02562 * 8 5 4 34 34 H 0.97002 * 120.00303 * 156.04270 * 10 9 8 35 35 H 1.09010 * 109.47370 * 83.81569 * 16 15 13 36 36 H 1.08997 * 109.47556 * 203.81982 * 16 15 13 37 37 H 1.09003 * 109.47586 * 323.82220 * 16 15 13 38 38 H 1.09001 * 109.47439 * 300.00304 * 19 17 15 39 39 H 1.09008 * 109.47212 * 59.99794 * 19 17 15 40 40 H 1.08997 * 109.47385 * 179.97438 * 19 17 15 41 41 H 0.96995 * 120.00005 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5756 1.2069 -0.0058 5 6 4.2814 0.0015 -0.0058 6 6 5.7134 0.0073 -0.0123 7 7 6.8493 0.0119 -0.0174 8 6 3.5865 -1.2081 -0.0005 9 6 2.1997 -1.2053 0.0052 10 7 1.4985 -2.4142 0.0110 11 6 2.0810 -3.5334 -0.4626 12 8 3.1720 -3.4727 -0.9912 13 6 1.3816 -4.8476 -0.3424 14 8 0.2852 -4.9064 0.1743 15 7 1.9681 -5.9682 -0.8081 16 6 3.2341 -5.8824 -1.5401 17 6 1.3395 -7.2721 -0.5821 18 1 0.4125 -7.1369 -0.0250 19 6 1.0333 -7.9308 -1.9286 20 6 2.2760 -8.1514 0.2059 21 1 3.2425 -7.7763 0.5084 22 6 1.8988 -9.4346 0.5405 23 7 2.7163 -10.2022 1.2277 24 14 0.2273 -10.0835 0.0165 25 1 0.3427 -10.7305 -1.3151 26 1 -0.2513 -11.0778 1.0102 27 1 -0.7382 -8.9580 -0.0620 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8924 -0.5095 31 1 1.6520 2.1317 0.0004 32 1 4.1099 2.1454 -0.0106 33 1 4.1265 -2.1434 -0.0001 34 1 0.5925 -2.4477 0.3560 35 1 4.0619 -5.8468 -0.8317 36 1 3.3427 -6.7566 -2.1821 37 1 3.2401 -4.9799 -2.1513 38 1 0.3560 -7.2947 -2.4986 39 1 1.9602 -8.0659 -2.4862 40 1 0.5660 -8.9010 -1.7606 41 1 2.4511 -11.1051 1.4628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132165917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = 12.195798 kcal Electronic energy + Delta-G solvation = -25610.963825 eV Core-core repulsion = 21878.344090 eV Total energy + Delta-G solvation = -3732.619736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27994 -39.71420 -38.22970 -36.84835 -36.09015 -34.91125 -33.08864 -32.73143 -30.59895 -30.27641 -27.94686 -26.51364 -25.42786 -24.95554 -23.23660 -22.51941 -20.93795 -19.81205 -19.00217 -17.55350 -17.00119 -16.64426 -16.16626 -15.90034 -15.78250 -15.55746 -15.15351 -14.53967 -14.50048 -14.21689 -13.79617 -13.62657 -13.41233 -13.29947 -13.15866 -13.04159 -12.53857 -12.47844 -12.33208 -12.28438 -12.12804 -11.90893 -11.86575 -11.57248 -11.27021 -10.98881 -10.79522 -10.72936 -10.23574 -9.73035 -9.46578 -9.19031 -8.97440 -8.73197 -8.41762 -7.98611 -6.23156 -4.26002 0.41926 0.88237 1.66004 2.34387 2.54776 2.69906 3.16865 3.30180 3.31117 3.40367 3.58573 3.64328 3.81482 4.26144 4.40734 4.48016 4.52847 4.70990 4.91818 5.04640 5.08871 5.23925 5.26539 5.47860 5.63533 5.74617 5.80266 5.95463 5.99534 6.00787 6.08481 6.12621 6.20575 6.30326 6.44481 6.55601 6.70679 6.78254 6.98123 7.06401 7.30788 7.45144 7.61121 7.90902 8.24712 8.42525 8.78269 9.35361 10.89216 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.003249 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.031089 B = 8615.954671 C = 9516.066979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.088 4.088 5 C -0.014 4.014 6 C 0.258 3.742 7 N -0.416 5.416 8 C -0.082 4.082 9 C 0.152 3.848 10 N -0.646 5.646 11 C 0.510 3.490 12 O -0.492 6.492 13 C 0.497 3.503 14 O -0.536 6.536 15 N -0.544 5.544 16 C 0.079 3.921 17 C 0.227 3.773 18 H 0.066 0.934 19 C -0.163 4.163 20 C -0.534 4.534 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.890 5.890 24 Si 0.883 3.117 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.262 1.262 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.425 0.575 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 21.828 -4.393 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.018 4.018 6 C -0.057 4.057 7 N -0.092 5.092 8 C -0.104 4.104 9 C 0.057 3.943 10 N -0.293 5.293 11 C 0.293 3.707 12 O -0.366 6.366 13 C 0.278 3.722 14 O -0.415 6.415 15 N -0.274 5.274 16 C -0.063 4.063 17 C 0.126 3.874 18 H 0.084 0.916 19 C -0.221 4.221 20 C -0.572 4.572 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.527 5.527 24 Si 0.712 3.288 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.187 1.187 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.171 21.502 -4.430 22.182 hybrid contribution -1.502 -0.643 -0.044 1.635 sum -4.674 20.859 -4.473 21.839 Atomic orbital electron populations 1.20862 0.90235 1.03751 1.03191 1.19892 0.96662 0.91426 1.00875 1.20741 0.93317 0.97259 1.00534 1.21107 0.94178 0.96597 0.99004 1.15773 0.84437 0.94317 1.07234 1.25602 0.92565 0.93770 0.93784 1.81250 1.12015 1.07235 1.08654 1.21495 0.92615 0.98704 0.97620 1.17396 0.90846 0.84948 1.01109 1.43287 1.19212 1.05906 1.60874 1.20859 0.86130 0.85773 0.77899 1.90683 1.20176 1.86031 1.39664 1.19531 0.86302 0.84614 0.81755 1.90722 1.19696 1.85964 1.45079 1.47891 1.22808 1.06428 1.50306 1.22057 0.84967 1.02645 0.96657 1.19519 0.95779 0.78407 0.93666 0.91605 1.22474 1.00731 0.99846 0.99001 1.21098 1.03718 0.97465 1.34900 0.90087 1.24852 0.96962 0.96394 0.94339 1.69866 1.36097 1.08751 1.37973 0.86923 0.84941 0.79182 0.77722 1.20233 1.21978 1.18728 0.90198 0.90426 0.91118 0.84451 0.84884 0.82385 0.73546 0.92228 0.90809 0.90121 0.94514 0.92162 0.92768 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.44 36.01 0.34 -0.34 16 2 C -0.09 -0.65 5.90 -104.33 -0.62 -1.27 16 3 C -0.10 -0.62 9.67 -39.67 -0.38 -1.01 16 4 C -0.09 -0.63 9.75 -39.14 -0.38 -1.01 16 5 C -0.01 -0.14 5.73 -106.96 -0.61 -0.75 16 6 C 0.26 3.10 15.33 -22.48 -0.34 2.75 16 7 N -0.42 -5.93 18.54 41.83 0.78 -5.15 16 8 C -0.08 -0.94 8.43 -38.95 -0.33 -1.27 16 9 C 0.15 1.60 6.42 -83.80 -0.54 1.06 16 10 N -0.65 -7.59 4.97 -10.33 -0.05 -7.64 16 11 C 0.51 7.68 7.57 -11.63 -0.09 7.59 16 12 O -0.49 -7.75 10.38 5.47 0.06 -7.70 16 13 C 0.50 9.21 7.72 -11.63 -0.09 9.12 16 14 O -0.54 -10.83 15.83 5.49 0.09 -10.74 16 15 N -0.54 -10.89 2.75 -175.81 -0.48 -11.38 16 16 C 0.08 1.38 8.48 59.84 0.51 1.89 16 17 C 0.23 5.23 2.21 -69.08 -0.15 5.07 16 18 H 0.07 1.64 5.97 -51.93 -0.31 1.33 16 19 C -0.16 -3.33 8.66 37.16 0.32 -3.01 16 20 C -0.53 -14.32 8.95 -34.44 -0.31 -14.63 16 21 H 0.08 2.37 7.89 -52.49 -0.41 1.95 16 22 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 23 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 24 Si 0.88 20.91 24.37 -169.99 -4.14 16.76 16 25 H -0.28 -6.25 6.87 56.52 0.39 -5.87 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.26 -6.04 6.53 56.52 0.37 -5.67 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.07 0.43 6.96 -51.93 -0.36 0.07 16 31 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.16 2.14 5.73 -52.49 -0.30 1.84 16 34 H 0.43 4.36 6.84 -40.82 -0.28 4.08 16 35 H 0.06 1.08 8.13 -51.92 -0.42 0.66 16 36 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 37 H 0.08 1.26 5.83 -51.93 -0.30 0.96 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.16 6.67 -51.92 -0.35 0.81 16 40 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -31.78 343.53 -5.11 -36.89 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.53 Total: 2.91 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.77 Total: 6.27 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 1.01 Total: -49.58 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.14 Total: -18.44 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.14 Total: 16.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.78 -5.11 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132165917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.087 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds