Wall clock time and date at job start Tue Mar 31 2020 11:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47391 * 180.02562 * 9 8 7 11 11 O 1.21303 * 119.99589 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00303 * 180.02562 * 10 9 8 13 13 C 1.40589 * 120.00344 * 180.02562 * 12 10 9 14 14 C 1.40653 * 126.08110 * 359.68439 * 13 12 10 15 15 N 1.30910 * 108.38623 * 179.81675 * 14 13 12 16 16 N 1.40066 * 108.40623 * 0.44843 * 15 14 13 17 17 C 1.37322 * 126.06714 * 179.69641 * 16 15 14 18 18 H 1.07997 * 120.00066 * 180.02562 * 17 16 15 19 19 C 1.38991 * 120.00035 * 0.02562 * 17 16 15 20 20 N 1.31292 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47333 * 59.99875 * 21 19 17 23 23 H 1.48495 * 109.47089 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47115 * 300.00045 * 21 19 17 25 25 C 1.35683 * 126.08445 * 180.02562 * 13 12 10 26 26 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 30 30 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 32 32 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 33 33 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 34 34 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 35 35 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 36 36 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 37 37 H 0.97001 * 119.99948 * 359.97438 * 12 10 9 38 38 H 1.08005 * 125.80411 * 359.97438 * 14 13 12 39 39 H 0.97000 * 119.99971 * 179.97438 * 20 19 17 40 40 H 1.07999 * 126.24411 * 359.97297 * 25 13 12 41 41 H 1.07997 * 120.03255 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.7844 -3.6268 -0.0178 11 8 8.3335 -2.5452 -0.0127 12 7 8.5201 -4.7560 -0.0236 13 6 9.9240 -4.6805 -0.0223 14 6 10.6900 -3.5009 -0.0214 15 7 11.9568 -3.8311 -0.0162 16 7 12.0495 -5.2287 -0.0241 17 6 13.2105 -5.9619 -0.0278 18 1 13.1677 -7.0410 -0.0343 19 6 14.4408 -5.3153 -0.0232 20 7 14.4929 -4.0034 -0.0148 21 14 16.0202 -6.3127 -0.0290 22 1 16.0654 -7.1612 -1.2470 23 1 17.1863 -5.3933 -0.0221 24 1 16.0645 -7.1767 1.1780 25 6 10.7809 -5.7324 -0.0281 26 6 2.1970 -1.1966 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0098 32 1 5.3552 0.0102 0.0002 33 1 6.0278 -1.7576 -0.8990 34 1 6.0280 -1.7669 0.8810 35 1 5.9445 -4.2448 0.8688 36 1 5.9443 -4.2363 -0.9111 37 1 8.0810 -5.6210 -0.0281 38 1 10.2995 -2.4939 -0.0220 39 1 15.3515 -3.5521 -0.0112 40 1 10.5089 -6.7776 -0.0343 41 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139570521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:42 Heat of formation + Delta-G solvation = 27.762347 kcal Electronic energy + Delta-G solvation = -24088.570964 eV Core-core repulsion = 20356.626244 eV Total energy + Delta-G solvation = -3731.944719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38351 -39.90634 -38.72445 -37.74355 -34.27851 -33.20329 -32.76130 -32.20998 -30.29505 -29.87681 -27.80470 -27.21333 -25.18887 -24.05592 -22.72278 -21.30908 -20.88732 -20.08914 -19.44301 -18.11818 -17.46514 -16.43672 -16.43058 -16.12966 -15.96006 -15.44186 -15.19229 -14.82228 -14.44567 -14.08121 -13.94131 -13.60964 -13.41711 -13.35050 -13.25684 -12.86880 -12.67860 -12.41141 -11.83743 -11.80253 -11.74446 -11.67598 -11.44545 -11.25082 -10.98330 -10.93312 -10.80678 -10.57133 -10.19778 -9.28195 -9.18354 -8.99133 -8.82822 -8.34572 -8.08082 -6.73133 -6.57089 -4.24659 1.12327 1.27171 2.77225 2.81800 3.01856 3.04140 3.08025 3.56491 3.65415 3.72168 3.92914 4.39089 4.56462 4.59410 4.69174 4.80599 4.88797 4.89483 5.00836 5.03131 5.12537 5.18849 5.24982 5.29771 5.42586 5.50347 5.57234 5.65801 5.72263 5.86786 6.15470 6.22312 6.26618 6.37595 6.43107 6.59801 6.87125 6.93047 7.08240 7.21828 7.27168 7.83787 8.12981 8.25681 8.59690 8.80109 9.35916 9.65007 10.38865 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.049748 B = 0.001875 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.702202 B =14931.517760 C =15468.468076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.163 4.163 4 C -0.076 4.076 5 C -0.213 4.213 6 C 0.139 3.861 7 O -0.319 6.319 8 C 0.076 3.924 9 C -0.135 4.135 10 C 0.503 3.497 11 O -0.539 6.539 12 N -0.621 5.621 13 C -0.063 4.063 14 C -0.033 4.033 15 N -0.261 5.261 16 N -0.142 5.142 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.083 4.083 26 C -0.157 4.157 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.176 0.824 39 H 0.276 0.724 40 H 0.146 0.854 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.468 3.330 0.015 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.094 4.094 5 C -0.231 4.231 6 C 0.094 3.906 7 O -0.233 6.233 8 C 0.001 3.999 9 C -0.175 4.175 10 C 0.288 3.712 11 O -0.417 6.417 12 N -0.263 5.263 13 C -0.168 4.168 14 C -0.208 4.208 15 N -0.092 5.092 16 N 0.091 4.909 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.396 5.396 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.234 4.234 26 C -0.175 4.175 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.232 0.768 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.759 4.528 0.024 21.247 hybrid contribution -0.152 -1.177 0.000 1.187 sum -20.911 3.351 0.025 21.178 Atomic orbital electron populations 1.20799 0.90849 1.02899 1.02492 1.19684 0.95955 0.92320 0.97272 1.20929 0.94181 0.97475 1.05559 1.20962 0.94122 0.97546 0.96744 1.21404 1.00909 0.92244 1.08576 1.18962 0.91618 0.84689 0.95364 1.85958 1.20580 1.28302 1.88427 1.22459 0.76800 0.97393 1.03281 1.21393 0.92727 0.97744 1.05632 1.19973 0.88230 0.84396 0.78556 1.90616 1.72865 1.27984 1.50233 1.42448 1.04749 1.08045 1.71044 1.17274 0.81213 0.94333 1.23987 1.24111 0.90403 0.98366 1.07947 1.78258 1.15992 0.89218 1.25737 1.44545 1.03161 1.04196 1.39034 1.19834 0.81181 0.91045 1.53569 0.86638 1.25645 1.00073 0.95920 0.95467 1.70205 1.26819 1.07448 1.35170 0.85891 0.79515 0.79240 0.79479 1.19144 1.20118 1.19153 1.21263 0.85293 0.96928 1.19947 1.20273 0.90861 0.98573 1.07835 0.90960 0.91372 0.91373 0.86098 0.85736 0.84947 0.90855 0.90863 0.88076 0.88068 0.76833 0.80737 0.91384 0.83672 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.05 -0.48 5.88 -104.64 -0.62 -1.09 16 3 C -0.16 -1.48 9.70 -39.56 -0.38 -1.87 16 4 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 5 C -0.21 -2.43 9.04 -39.44 -0.36 -2.79 16 6 C 0.14 1.66 6.69 -39.22 -0.26 1.40 16 7 O -0.32 -3.91 10.14 -19.45 -0.20 -4.11 16 8 C 0.08 0.93 4.03 37.15 0.15 1.08 16 9 C -0.13 -1.53 6.07 -27.89 -0.17 -1.70 16 10 C 0.50 8.27 7.80 -10.99 -0.09 8.19 16 11 O -0.54 -11.01 13.14 5.54 0.07 -10.93 16 12 N -0.62 -10.60 5.47 -10.00 -0.05 -10.65 16 13 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 14 C -0.03 -0.86 10.85 -17.03 -0.18 -1.05 16 15 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 16 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 17 C -0.32 -8.56 10.25 -14.81 -0.15 -8.71 16 18 H 0.12 2.71 7.83 -52.49 -0.41 2.29 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.52 11.81 55.50 0.66 -20.87 16 21 Si 0.94 18.85 29.55 -169.99 -5.02 13.83 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 25 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 26 C -0.16 -1.64 9.64 -39.43 -0.38 -2.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 32 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 33 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 34 H 0.07 0.93 7.62 -51.92 -0.40 0.53 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 5.10 8.83 -40.82 -0.36 4.74 16 38 H 0.18 4.53 5.92 -52.48 -0.31 4.22 16 39 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.15 2.81 8.06 -52.49 -0.42 2.38 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -33.80 354.69 -7.40 -41.20 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.14 Total: 10.48 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -3.34 Total: -13.09 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.88 Total: -42.72 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.12 Total: -15.04 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.80 -7.40 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139570521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.966 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds