Wall clock time and date at job start Tue Mar 31 2020 11:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47391 * 180.02562 * 9 8 7 11 11 O 1.21303 * 119.99589 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00303 * 180.02562 * 10 9 8 13 13 C 1.40589 * 120.00344 * 180.02562 * 12 10 9 14 14 C 1.40653 * 126.08110 * 359.68439 * 13 12 10 15 15 N 1.30910 * 108.38623 * 179.81675 * 14 13 12 16 16 N 1.40066 * 108.40623 * 0.44843 * 15 14 13 17 17 C 1.37322 * 126.06714 * 179.69641 * 16 15 14 18 18 H 1.07997 * 120.00066 * 180.02562 * 17 16 15 19 19 C 1.38991 * 120.00035 * 0.02562 * 17 16 15 20 20 N 1.31292 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47333 * 59.99875 * 21 19 17 23 23 H 1.48495 * 109.47089 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47115 * 300.00045 * 21 19 17 25 25 C 1.35683 * 126.08445 * 180.02562 * 13 12 10 26 26 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 30 30 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 32 32 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 33 33 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 34 34 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 35 35 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 36 36 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 37 37 H 0.97001 * 119.99948 * 359.97438 * 12 10 9 38 38 H 1.08005 * 125.80411 * 359.97438 * 14 13 12 39 39 H 0.97000 * 119.99971 * 179.97438 * 20 19 17 40 40 H 1.07999 * 126.24411 * 359.97297 * 25 13 12 41 41 H 1.07997 * 120.03255 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.7844 -3.6268 -0.0178 11 8 8.3335 -2.5452 -0.0127 12 7 8.5201 -4.7560 -0.0236 13 6 9.9240 -4.6805 -0.0223 14 6 10.6900 -3.5009 -0.0214 15 7 11.9568 -3.8311 -0.0162 16 7 12.0495 -5.2287 -0.0241 17 6 13.2105 -5.9619 -0.0278 18 1 13.1677 -7.0410 -0.0343 19 6 14.4408 -5.3153 -0.0232 20 7 14.4929 -4.0034 -0.0148 21 14 16.0202 -6.3127 -0.0290 22 1 16.0654 -7.1612 -1.2470 23 1 17.1863 -5.3933 -0.0221 24 1 16.0645 -7.1767 1.1780 25 6 10.7809 -5.7324 -0.0281 26 6 2.1970 -1.1966 -0.0058 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0098 32 1 5.3552 0.0102 0.0002 33 1 6.0278 -1.7576 -0.8990 34 1 6.0280 -1.7669 0.8810 35 1 5.9445 -4.2448 0.8688 36 1 5.9443 -4.2363 -0.9111 37 1 8.0810 -5.6210 -0.0281 38 1 10.2995 -2.4939 -0.0220 39 1 15.3515 -3.5521 -0.0112 40 1 10.5089 -6.7776 -0.0343 41 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139570521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:42 Heat of formation + Delta-G solvation = 6.136988 kcal Electronic energy + Delta-G solvation = -24089.508710 eV Core-core repulsion = 20356.626244 eV Total energy + Delta-G solvation = -3732.882465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74767 -41.16053 -40.24344 -38.61777 -35.95698 -34.97678 -33.49781 -33.23132 -32.20111 -30.80989 -29.53980 -27.88276 -26.93109 -25.29992 -23.50047 -22.89793 -22.13112 -21.43036 -21.17777 -19.41525 -18.87515 -17.64046 -17.43762 -17.37680 -17.19378 -16.83748 -16.61112 -16.09751 -15.74249 -15.20947 -15.19126 -14.89207 -14.58077 -14.53407 -14.41194 -14.11684 -13.68787 -13.47873 -13.30437 -12.95661 -12.87444 -12.87386 -12.67153 -12.58648 -12.43503 -12.14080 -11.83890 -11.73066 -11.70481 -11.00402 -10.85910 -10.72667 -10.10598 -9.74024 -9.16495 -8.53487 -8.47073 -6.24662 0.35519 0.48050 1.21644 1.39595 1.51990 1.56129 1.76027 1.86545 2.13567 2.51592 2.56467 2.79124 2.97155 3.08973 3.62694 3.89995 3.91453 3.94099 4.09107 4.17235 4.32684 4.41608 4.44356 4.48265 4.55340 4.61701 4.73351 4.75261 4.87249 4.88792 5.00024 5.05087 5.08611 5.25772 5.29498 5.37412 5.47205 5.50858 5.65406 5.85774 5.95609 6.31108 6.39222 6.73353 6.74071 7.37407 7.46883 7.68230 8.52207 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.049748 B = 0.001875 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.702202 B =14931.517760 C =15468.468076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.165 4.165 4 C -0.084 4.084 5 C -0.233 4.233 6 C 0.115 3.885 7 O -0.321 6.321 8 C 0.080 3.920 9 C -0.117 4.117 10 C 0.502 3.498 11 O -0.581 6.581 12 N -0.613 5.613 13 C -0.046 4.046 14 C -0.061 4.061 15 N -0.312 5.312 16 N -0.169 5.169 17 C -0.356 4.356 18 H 0.142 0.858 19 C -0.007 4.007 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.253 1.253 23 H -0.279 1.279 24 H -0.253 1.253 25 C -0.079 4.079 26 C -0.166 4.166 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.423 0.577 38 H 0.167 0.833 39 H 0.276 0.724 40 H 0.189 0.811 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.778 1.409 0.001 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.183 4.183 4 C -0.102 4.102 5 C -0.251 4.251 6 C 0.070 3.930 7 O -0.235 6.235 8 C 0.004 3.996 9 C -0.156 4.156 10 C 0.291 3.709 11 O -0.462 6.462 12 N -0.258 5.258 13 C -0.153 4.153 14 C -0.236 4.236 15 N -0.144 5.144 16 N 0.062 4.938 17 C -0.487 4.487 18 H 0.159 0.841 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.838 3.162 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.177 1.177 25 C -0.230 4.230 26 C -0.185 4.185 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.261 0.739 38 H 0.184 0.816 39 H 0.086 0.914 40 H 0.206 0.794 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.141 2.571 0.010 23.283 hybrid contribution 0.326 -0.489 0.006 0.588 sum -22.815 2.082 0.016 22.910 Atomic orbital electron populations 1.20868 0.88503 1.04026 1.03477 1.20101 0.97681 0.91791 0.95810 1.21290 0.93914 0.98681 1.04404 1.21237 0.94932 0.97632 0.96441 1.21479 1.00697 0.93077 1.09895 1.19243 0.92381 0.84610 0.96764 1.85917 1.20084 1.28666 1.88803 1.22319 0.77251 0.97785 1.02226 1.21300 0.88126 0.97744 1.08461 1.20906 0.90269 0.83329 0.76431 1.90613 1.74200 1.29756 1.51587 1.42394 1.02398 1.09813 1.71187 1.17350 0.83863 0.92753 1.21289 1.24179 0.90713 0.99330 1.09360 1.78149 1.17613 0.91159 1.27506 1.44837 1.04747 1.03720 1.40459 1.20596 0.81577 0.92349 1.54145 0.84098 1.26894 1.03947 0.96909 0.94123 1.70395 1.27746 1.09859 1.37383 0.84648 0.73854 0.77382 0.80292 1.17684 1.20365 1.17698 1.22028 0.84068 0.98980 1.17900 1.20542 0.90322 0.99782 1.07847 0.89893 0.89992 0.90578 0.83632 0.84226 0.85921 0.92085 0.92096 0.85087 0.85074 0.73924 0.81577 0.91420 0.79361 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.35 16 2 C -0.05 -0.88 5.88 -19.88 -0.12 -1.00 16 3 C -0.16 -2.71 9.70 22.28 0.22 -2.49 16 4 C -0.08 -1.63 10.04 22.25 0.22 -1.41 16 5 C -0.23 -5.45 9.04 22.36 0.20 -5.25 16 6 C 0.12 2.73 6.69 22.51 0.15 2.88 16 7 O -0.32 -7.63 10.14 -92.52 -0.94 -8.57 16 8 C 0.08 1.93 4.03 71.98 0.29 2.22 16 9 C -0.12 -2.39 6.07 29.85 0.18 -2.21 16 10 C 0.50 16.05 7.80 87.66 0.68 16.73 16 11 O -0.58 -24.34 13.14 -3.10 -0.04 -24.38 16 12 N -0.61 -19.81 5.47 -303.93 -1.66 -21.47 16 13 C -0.05 -2.09 6.90 37.73 0.26 -1.83 16 14 C -0.06 -3.31 10.85 85.42 0.93 -2.38 16 15 N -0.31 -18.95 10.40 -56.46 -0.59 -19.54 16 16 N -0.17 -9.37 3.74 -190.01 -0.71 -10.08 16 17 C -0.36 -18.84 10.25 84.01 0.86 -17.98 16 18 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 19 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 20 N -0.83 -48.04 11.81 21.66 0.26 -47.78 16 21 Si 1.02 38.59 29.55 68.60 2.03 40.61 16 22 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 23 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 24 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 25 C -0.08 -3.63 11.49 83.38 0.96 -2.67 16 26 C -0.17 -3.29 9.64 22.37 0.22 -3.07 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 29 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.12 2.99 6.30 -2.91 -0.02 2.97 16 33 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 34 H 0.06 1.60 7.62 -2.38 -0.02 1.58 16 35 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.42 9.40 8.83 -92.71 -0.82 8.59 16 38 H 0.17 9.16 5.92 -2.91 -0.02 9.14 16 39 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.19 6.67 8.06 -2.91 -0.02 6.65 16 41 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -78.28 354.69 4.83 -73.45 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.25 Total: 36.49 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 6.23 Total: -18.74 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -2.70 Total: -98.87 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.98 Total: -32.96 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Total: -78.28 4.83 -73.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139570521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.589 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds