Wall clock time and date at job start Tue Mar 31 2020 11:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38293 * 119.94223 * 2 1 4 4 C 1.38117 * 120.05423 * 179.97438 * 3 2 1 5 5 C 1.38757 * 119.94573 * 0.02562 * 4 3 2 6 6 O 1.35900 * 120.05719 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99875 * 0.02562 * 6 5 4 8 8 C 1.50696 * 109.46757 * 179.97438 * 7 6 5 9 9 O 1.21297 * 120.00357 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 7 6 11 11 C 1.40588 * 120.00316 * 180.02562 * 10 8 7 12 12 C 1.40654 * 126.08389 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38683 * 179.72009 * 12 11 10 14 14 N 1.40064 * 108.40777 * 0.43987 * 13 12 11 15 15 C 1.37321 * 126.06857 * 179.82149 * 14 13 12 16 16 H 1.07998 * 120.00111 * 173.76490 * 15 14 13 17 17 C 1.38990 * 120.00353 * 354.03771 * 15 14 13 18 18 N 1.31294 * 119.99607 * 5.58222 * 17 15 14 19 19 Si 1.86794 * 120.00402 * 185.58712 * 17 15 14 20 20 H 1.48500 * 109.47486 * 94.97709 * 19 17 15 21 21 H 1.48508 * 109.47057 * 214.97869 * 19 17 15 22 22 H 1.48506 * 109.47163 * 334.97268 * 19 17 15 23 23 C 1.35688 * 126.08302 * 180.02562 * 11 10 8 24 24 C 1.38712 * 119.88736 * 0.28273 * 5 4 3 25 25 C 1.50702 * 120.02977 * 179.72531 * 24 5 4 26 26 C 1.38173 * 119.93975 * 359.39845 * 24 5 4 27 27 H 1.09000 * 109.47094 * 89.99895 * 1 2 3 28 28 H 1.08992 * 109.47456 * 210.00033 * 1 2 3 29 29 H 1.09006 * 109.47461 * 330.00502 * 1 2 3 30 30 H 1.08001 * 119.97293 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.03024 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47013 * 60.00023 * 7 6 5 33 33 H 1.08997 * 109.46979 * 299.99771 * 7 6 5 34 34 H 0.97003 * 120.00020 * 0.02562 * 10 8 7 35 35 H 1.07997 * 125.80177 * 0.02562 * 12 11 10 36 36 H 0.96998 * 120.00233 * 180.02562 * 18 17 15 37 37 H 1.07997 * 126.24694 * 0.03480 * 23 11 10 38 38 H 1.08998 * 109.47150 * 89.99571 * 25 24 5 39 39 H 1.09005 * 109.46800 * 209.99863 * 25 24 5 40 40 H 1.09003 * 109.46935 * 329.99212 * 25 24 5 41 41 H 1.08002 * 119.96829 * 180.32155 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1984 0.0000 4 6 3.5784 1.2011 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0001 0.0016 7 6 6.2811 1.2734 0.0032 8 6 7.7751 1.0759 0.0048 9 8 8.2388 -0.0450 0.0041 10 7 8.5962 2.1447 0.0060 11 6 9.9899 1.9605 0.0070 12 6 10.6623 0.7251 0.0063 13 7 11.9508 0.9562 0.0015 14 7 12.1515 2.3424 0.0092 15 6 13.3659 2.9835 0.0107 16 1 13.4092 4.0583 -0.0848 17 6 14.5396 2.2485 0.1295 18 7 14.4952 0.9363 0.1298 19 14 16.1800 3.1276 0.2887 20 1 16.5343 3.2584 1.7249 21 1 17.2308 2.3455 -0.4111 22 1 16.0794 4.4779 -0.3213 23 6 10.9258 2.9430 0.0087 24 6 3.5787 -1.2005 -0.0059 25 6 4.3303 -2.5067 -0.0122 26 6 2.1970 -1.1978 0.0002 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 1.6559 2.1329 -0.0004 31 1 4.1171 2.1372 0.0010 32 1 5.9875 1.8296 0.8935 33 1 5.9890 1.8311 -0.8865 34 1 8.2254 3.0411 0.0062 35 1 10.1949 -0.2485 0.0046 36 1 15.3143 0.4234 0.2131 37 1 10.7356 4.0061 0.0101 38 1 4.5111 -2.8268 1.0139 39 1 3.7403 -3.2629 -0.5302 40 1 5.2831 -2.3752 -0.5250 41 1 1.6557 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139583742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:31 Heat of formation + Delta-G solvation = 10.216442 kcal Electronic energy + Delta-G solvation = -24503.243519 eV Core-core repulsion = 20770.537952 eV Total energy + Delta-G solvation = -3732.705567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81526 -41.29323 -40.13983 -38.46410 -35.95660 -35.01127 -34.15505 -32.49001 -32.28926 -30.64317 -28.91429 -28.10635 -26.95472 -26.50026 -23.53786 -22.86554 -21.85873 -21.57687 -21.22053 -19.46999 -18.93107 -18.21381 -17.41683 -17.38953 -16.85017 -16.77912 -15.91076 -15.82106 -15.64827 -15.21992 -15.11221 -14.98843 -14.77018 -14.51632 -14.08000 -13.96811 -13.70559 -13.49354 -13.34333 -13.28364 -12.98426 -12.81442 -12.74758 -12.70108 -12.19678 -12.06781 -11.89182 -11.74449 -11.73295 -11.04528 -10.84894 -10.70645 -10.11613 -9.74035 -8.91850 -8.56070 -8.47930 -6.25579 0.39694 0.46930 1.18256 1.39287 1.47324 1.56091 1.60003 1.84326 2.13744 2.47584 2.66998 2.77934 2.94002 3.07832 3.67502 3.86572 3.91580 4.03216 4.09681 4.14022 4.37892 4.40636 4.43640 4.57880 4.59548 4.69970 4.77302 4.82185 4.92647 4.99919 5.03327 5.05526 5.18520 5.28211 5.35226 5.39833 5.41718 5.51632 5.71525 5.90471 5.95555 6.28465 6.42146 6.69943 6.72880 7.33396 7.46272 7.66599 8.51795 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.046311 B = 0.002091 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.463808 B =13389.152812 C =13963.302370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.091 4.091 4 C -0.205 4.205 5 C 0.097 3.903 6 O -0.318 6.318 7 C 0.057 3.943 8 C 0.496 3.504 9 O -0.567 6.567 10 N -0.607 5.607 11 C -0.046 4.046 12 C -0.061 4.061 13 N -0.312 5.312 14 N -0.168 5.168 15 C -0.354 4.354 16 H 0.144 0.856 17 C -0.008 4.008 18 N -0.826 5.826 19 Si 1.020 2.980 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.241 1.241 23 C -0.075 4.075 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.090 4.090 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.425 0.575 35 H 0.163 0.837 36 H 0.276 0.724 37 H 0.193 0.807 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.511 5.705 -0.004 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.108 4.108 4 C -0.223 4.223 5 C 0.052 3.948 6 O -0.231 6.231 7 C -0.021 4.021 8 C 0.282 3.718 9 O -0.445 6.445 10 N -0.254 5.254 11 C -0.152 4.152 12 C -0.237 4.237 13 N -0.144 5.144 14 N 0.063 4.937 15 C -0.485 4.485 16 H 0.161 0.839 17 C -0.220 4.220 18 N -0.454 5.454 19 Si 0.839 3.161 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.163 1.163 23 C -0.225 4.225 24 C -0.133 4.133 25 C -0.162 4.162 26 C -0.108 4.108 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.263 0.737 35 H 0.180 0.820 36 H 0.086 0.914 37 H 0.210 0.790 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.787 4.031 -0.009 24.126 hybrid contribution 0.107 0.655 0.053 0.666 sum -23.680 4.686 0.044 24.139 Atomic orbital electron populations 1.20758 0.89082 1.03580 1.02910 1.20206 0.97704 0.92728 1.02143 1.21167 0.92985 0.98830 0.97867 1.21534 0.96122 0.96865 1.07789 1.19168 0.81433 0.95135 0.99047 1.86115 1.17280 1.30660 1.89063 1.22460 0.87358 0.85625 1.06666 1.20758 0.89287 0.84359 0.77351 1.90636 1.77751 1.25951 1.50208 1.42150 1.02090 1.09686 1.71506 1.17292 0.83573 0.92708 1.21591 1.24139 0.91300 0.98828 1.09400 1.78156 1.15568 0.93248 1.27471 1.44866 1.05053 1.03438 1.40384 1.20652 0.80408 0.93986 1.53429 0.83920 1.26922 1.04767 0.96095 0.94186 1.70410 1.30387 1.07393 1.37192 0.84564 0.73853 0.78720 0.78973 1.19195 1.20282 1.16347 1.22029 0.84092 0.98769 1.17599 1.19537 0.94252 0.93634 1.05920 1.20593 0.99512 0.93835 1.02252 1.21004 0.91542 0.99220 0.99031 0.90631 0.90994 0.90541 0.83214 0.82995 0.85739 0.85736 0.73691 0.82009 0.91420 0.78973 0.91557 0.89883 0.93328 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.13 -1.97 5.88 -19.85 -0.12 -2.08 16 3 C -0.09 -1.36 9.69 22.25 0.22 -1.15 16 4 C -0.20 -3.65 9.04 22.37 0.20 -3.45 16 5 C 0.10 2.37 6.66 22.51 0.15 2.52 16 6 O -0.32 -9.33 8.72 -73.39 -0.64 -9.97 16 7 C 0.06 1.28 5.22 71.23 0.37 1.65 16 8 C 0.50 17.03 7.88 87.66 0.69 17.72 16 9 O -0.57 -26.33 13.65 15.95 0.22 -26.11 16 10 N -0.61 -19.82 5.47 -303.93 -1.66 -21.49 16 11 C -0.05 -2.08 6.90 37.73 0.26 -1.82 16 12 C -0.06 -3.42 10.85 85.42 0.93 -2.50 16 13 N -0.31 -19.16 10.42 -56.47 -0.59 -19.75 16 14 N -0.17 -9.36 3.74 -190.01 -0.71 -10.07 16 15 C -0.35 -18.67 10.24 84.01 0.86 -17.81 16 16 H 0.14 6.46 7.84 -2.91 -0.02 6.43 16 17 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 18 N -0.83 -48.27 11.84 21.66 0.26 -48.02 16 19 Si 1.02 38.64 29.56 68.60 2.03 40.67 16 20 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.24 -8.12 7.11 99.48 0.71 -7.42 16 23 C -0.07 -3.38 11.49 83.38 0.96 -2.42 16 24 C -0.13 -3.11 5.89 -19.77 -0.12 -3.23 16 25 C -0.11 -2.47 9.79 71.24 0.70 -1.78 16 26 C -0.09 -1.63 9.35 22.25 0.21 -1.42 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 29 H 0.08 0.54 8.08 -2.38 -0.02 0.52 16 30 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 32 H 0.13 1.91 7.66 -2.39 -0.02 1.89 16 33 H 0.13 1.91 7.66 -2.39 -0.02 1.89 16 34 H 0.43 9.04 8.83 -92.71 -0.82 8.22 16 35 H 0.16 9.29 5.92 -2.91 -0.02 9.27 16 36 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.19 6.64 8.06 -2.91 -0.02 6.61 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.52 8.09 -2.38 -0.02 1.50 16 40 H 0.05 1.39 7.53 -2.39 -0.02 1.37 16 41 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -83.16 353.85 5.64 -77.51 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.25 Total: 33.23 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 6.49 Total: -16.00 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -2.70 Total: -99.32 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.42 Total: -36.08 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -83.16 5.64 -77.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139583742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.730 kcal (2) G-P(sol) polarization free energy of solvation -83.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds