Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.97063 * 2 1 4 4 C 1.38268 * 120.10988 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97155 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05525 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 4 3 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46992 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99981 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99647 * 179.97438 * 10 9 8 13 13 C 1.40598 * 119.99652 * 179.97438 * 12 10 9 14 14 C 1.40647 * 126.08203 * 359.69360 * 13 12 10 15 15 N 1.30909 * 108.38604 * 179.81648 * 14 13 12 16 16 N 1.40067 * 108.40584 * 0.43836 * 15 14 13 17 17 C 1.37322 * 126.06906 * 179.69710 * 16 15 14 18 18 H 1.07999 * 120.00503 * 180.02562 * 17 16 15 19 19 C 1.38990 * 120.00033 * 0.02562 * 17 16 15 20 20 N 1.31300 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47073 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47098 * 120.00318 * 21 19 17 24 24 H 1.48495 * 109.47109 * 240.00453 * 21 19 17 25 25 C 1.35681 * 126.07937 * 180.02562 * 13 12 10 26 26 C 1.38150 * 119.97223 * 180.23551 * 2 1 3 27 27 H 1.08993 * 109.47290 * 89.99692 * 1 2 3 28 28 H 1.09000 * 109.46914 * 209.99971 * 1 2 3 29 29 H 1.09002 * 109.47052 * 329.99742 * 1 2 3 30 30 H 1.08001 * 119.94795 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46840 * 269.97937 * 5 4 3 32 32 H 1.09003 * 109.47240 * 29.97753 * 5 4 3 33 33 H 1.08994 * 109.46878 * 149.97626 * 5 4 3 34 34 H 1.08005 * 120.02930 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 36 36 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 37 37 H 0.96995 * 120.00267 * 0.02562 * 12 10 9 38 38 H 1.07998 * 125.80654 * 359.96385 * 14 13 12 39 39 H 0.96994 * 119.99963 * 179.97438 * 20 19 17 40 40 H 1.07994 * 126.24828 * 359.97438 * 25 13 12 41 41 H 1.08006 * 120.02407 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0071 -0.0005 7 6 3.5844 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5716 0.0005 10 6 4.4089 -4.7654 0.0004 11 8 5.6112 -4.6047 0.0004 12 7 3.8956 -6.0115 0.0014 13 6 4.7537 -7.1253 0.0007 14 6 6.1596 -7.0877 -0.0070 15 7 6.6056 -8.3185 -0.0010 16 7 5.5067 -9.1870 0.0006 17 6 5.5608 -10.5592 0.0005 18 1 4.6475 -11.1356 0.0014 19 6 6.7909 -11.2062 -0.0006 20 7 7.9013 -10.5055 -0.0012 21 14 6.8644 -13.0728 0.0000 22 1 5.4850 -13.6225 0.0012 23 1 7.5821 -13.5404 -1.2131 24 1 7.5847 -13.5394 1.2119 25 6 4.3727 -8.4275 0.0011 26 6 2.1972 -1.1967 -0.0049 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6564 2.1323 -0.0004 31 1 4.5107 2.8241 -1.0275 32 1 3.7388 3.2661 0.5143 33 1 5.2828 2.3806 0.5138 34 1 5.3552 0.0102 -0.0014 35 1 2.8604 -3.5970 0.8905 36 1 2.8604 -3.5977 -0.8894 37 1 2.9342 -6.1400 0.0018 38 1 6.7678 -6.1953 -0.0140 39 1 8.7597 -10.9571 -0.0016 40 1 3.3575 -8.7958 0.0023 41 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139745169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = 31.711229 kcal Electronic energy + Delta-G solvation = -24346.966897 eV Core-core repulsion = 20615.193414 eV Total energy + Delta-G solvation = -3731.773483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54025 -39.84183 -38.72179 -37.54407 -34.25465 -33.79762 -33.19378 -31.33570 -30.30334 -29.08892 -27.53851 -27.38986 -26.62647 -24.73730 -22.09242 -21.43681 -20.93282 -20.17104 -19.45449 -17.93325 -17.34257 -16.92016 -16.34505 -16.18868 -15.73671 -15.43064 -15.11016 -14.49076 -14.22668 -13.98748 -13.92580 -13.62436 -13.49068 -13.26069 -13.14115 -12.94245 -12.83674 -12.65915 -12.04950 -12.03118 -11.70625 -11.66089 -11.45140 -11.28702 -11.07958 -10.93404 -10.88801 -10.51808 -10.21357 -9.22226 -9.19623 -8.83967 -8.82465 -8.30831 -8.07698 -6.74157 -6.56902 -4.24497 1.10427 1.26781 2.67073 2.73898 2.99745 3.04799 3.10591 3.51725 3.64733 3.75417 3.93002 4.38096 4.45962 4.53065 4.67951 4.76730 4.91851 4.98810 4.99928 5.03520 5.08607 5.10623 5.13677 5.28701 5.35247 5.36645 5.46199 5.58384 5.68902 5.93163 6.13555 6.21714 6.28936 6.40177 6.41679 6.59348 6.85104 6.93236 7.06451 7.21164 7.28639 7.84400 8.11184 8.24479 8.59531 8.78629 9.36108 9.65162 10.39128 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039021 B = 0.002070 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.389804 B =13524.279904 C =14215.918887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.163 4.163 4 C -0.045 4.045 5 C -0.114 4.114 6 C -0.157 4.157 7 C 0.142 3.858 8 O -0.285 6.285 9 C 0.047 3.953 10 C 0.499 3.501 11 O -0.512 6.512 12 N -0.620 5.620 13 C -0.061 4.061 14 C -0.032 4.032 15 N -0.260 5.260 16 N -0.142 5.142 17 C -0.323 4.323 18 H 0.117 0.883 19 C 0.045 3.955 20 N -0.769 5.769 21 Si 0.935 3.065 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.082 4.082 26 C -0.219 4.219 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.398 0.602 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.687 18.887 -0.056 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.182 4.182 4 C -0.045 4.045 5 C -0.171 4.171 6 C -0.175 4.175 7 C 0.096 3.904 8 O -0.197 6.197 9 C -0.032 4.032 10 C 0.283 3.717 11 O -0.387 6.387 12 N -0.264 5.264 13 C -0.166 4.166 14 C -0.208 4.208 15 N -0.091 5.091 16 N 0.090 4.910 17 C -0.455 4.455 18 H 0.135 0.865 19 C -0.172 4.172 20 N -0.395 5.395 21 Si 0.759 3.241 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.233 4.233 26 C -0.238 4.238 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.231 0.769 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.298 18.198 -0.049 21.964 hybrid contribution -1.580 -0.516 -0.013 1.662 sum -13.879 17.682 -0.063 22.478 Atomic orbital electron populations 1.20815 0.91028 1.02881 1.02478 1.19662 0.95904 0.92444 0.96471 1.20779 0.93408 0.97457 1.06526 1.19670 0.93596 0.94548 0.96659 1.20808 1.00096 0.93624 1.02580 1.20306 1.00543 0.89125 1.07546 1.19041 0.90456 0.85921 0.94988 1.86191 1.34137 1.11276 1.88089 1.22433 0.93838 0.83534 1.03369 1.19709 0.89090 0.83288 0.79637 1.90649 1.14934 1.84965 1.48167 1.42259 1.08774 1.03587 1.71784 1.17218 0.90351 0.84837 1.24202 1.24133 0.91913 0.96916 1.07801 1.78272 1.07955 0.97165 1.25693 1.44570 1.02169 1.05218 1.39002 1.19924 0.95287 0.76905 1.53397 0.86527 1.25661 0.94727 1.01311 0.95495 1.70227 0.97901 1.36169 1.35236 0.85754 0.79260 0.80579 0.78490 1.18685 1.19906 1.19902 1.21235 0.92460 0.89670 1.19977 1.21118 0.92831 0.99001 1.10812 0.90949 0.91428 0.91394 0.86113 0.90869 0.91375 0.91195 0.85019 0.89289 0.89300 0.76926 0.80704 0.91466 0.83617 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.04 -0.42 5.88 -104.64 -0.62 -1.03 16 3 C -0.16 -1.50 9.35 -39.56 -0.37 -1.87 16 4 C -0.04 -0.44 5.88 -104.65 -0.62 -1.05 16 5 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 6 C -0.16 -1.87 9.64 -39.43 -0.38 -2.25 16 7 C 0.14 1.82 6.69 -39.22 -0.26 1.56 16 8 O -0.29 -4.31 9.67 -39.35 -0.38 -4.69 16 9 C 0.05 0.59 5.22 36.01 0.19 0.78 16 10 C 0.50 8.81 7.88 -10.98 -0.09 8.72 16 11 O -0.51 -11.57 13.65 -14.36 -0.20 -11.76 16 12 N -0.62 -10.71 5.47 -10.00 -0.05 -10.76 16 13 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 14 C -0.03 -0.86 10.85 -17.04 -0.18 -1.04 16 15 N -0.26 -7.62 10.40 30.80 0.32 -7.30 16 16 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 17 C -0.32 -8.53 10.25 -14.81 -0.15 -8.68 16 18 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -21.59 11.81 55.50 0.66 -20.93 16 21 Si 0.94 18.91 29.55 -169.99 -5.02 13.89 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 26 C -0.22 -2.31 8.69 -39.44 -0.34 -2.65 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 36 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 37 H 0.40 4.96 8.82 -40.82 -0.36 4.60 16 38 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 41 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -35.34 355.14 -7.47 -42.81 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.14 Total: 8.70 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.96 Total: -11.34 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.88 Total: -42.95 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.58 Total: -16.46 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.34 -7.47 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139745169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.519 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds