Wall clock time and date at job start Tue Mar 31 2020 11:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 119.97063 * 2 1 4 4 C 1.38268 * 120.10988 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97155 * 180.02562 * 4 3 2 6 6 C 1.38139 * 120.05525 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94491 * 0.02562 * 6 4 3 8 8 O 1.35905 * 120.05258 * 180.02562 * 7 6 4 9 9 C 1.42901 * 116.99604 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46992 * 179.97438 * 9 8 7 11 11 O 1.21296 * 119.99981 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99647 * 179.97438 * 10 9 8 13 13 C 1.40598 * 119.99652 * 179.97438 * 12 10 9 14 14 C 1.40647 * 126.08203 * 359.69360 * 13 12 10 15 15 N 1.30909 * 108.38604 * 179.81648 * 14 13 12 16 16 N 1.40067 * 108.40584 * 0.43836 * 15 14 13 17 17 C 1.37322 * 126.06906 * 179.69710 * 16 15 14 18 18 H 1.07999 * 120.00503 * 180.02562 * 17 16 15 19 19 C 1.38990 * 120.00033 * 0.02562 * 17 16 15 20 20 N 1.31300 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00128 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47073 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47098 * 120.00318 * 21 19 17 24 24 H 1.48495 * 109.47109 * 240.00453 * 21 19 17 25 25 C 1.35681 * 126.07937 * 180.02562 * 13 12 10 26 26 C 1.38150 * 119.97223 * 180.23551 * 2 1 3 27 27 H 1.08993 * 109.47290 * 89.99692 * 1 2 3 28 28 H 1.09000 * 109.46914 * 209.99971 * 1 2 3 29 29 H 1.09002 * 109.47052 * 329.99742 * 1 2 3 30 30 H 1.08001 * 119.94795 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.46840 * 269.97937 * 5 4 3 32 32 H 1.09003 * 109.47240 * 29.97753 * 5 4 3 33 33 H 1.08994 * 109.46878 * 149.97626 * 5 4 3 34 34 H 1.08005 * 120.02930 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47352 * 299.99771 * 9 8 7 36 36 H 1.08999 * 109.47144 * 59.99795 * 9 8 7 37 37 H 0.96995 * 120.00267 * 0.02562 * 12 10 9 38 38 H 1.07998 * 125.80654 * 359.96385 * 14 13 12 39 39 H 0.96994 * 119.99963 * 179.97438 * 20 19 17 40 40 H 1.07994 * 126.24828 * 359.97438 * 25 13 12 41 41 H 1.08006 * 120.02407 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5084 0.0001 6 6 4.2752 0.0071 -0.0005 7 6 3.5844 -1.1960 -0.0005 8 8 4.2657 -2.3720 0.0000 9 6 3.4892 -3.5716 0.0005 10 6 4.4089 -4.7654 0.0004 11 8 5.6112 -4.6047 0.0004 12 7 3.8956 -6.0115 0.0014 13 6 4.7537 -7.1253 0.0007 14 6 6.1596 -7.0877 -0.0070 15 7 6.6056 -8.3185 -0.0010 16 7 5.5067 -9.1870 0.0006 17 6 5.5608 -10.5592 0.0005 18 1 4.6475 -11.1356 0.0014 19 6 6.7909 -11.2062 -0.0006 20 7 7.9013 -10.5055 -0.0012 21 14 6.8644 -13.0728 0.0000 22 1 5.4850 -13.6225 0.0012 23 1 7.5821 -13.5404 -1.2131 24 1 7.5847 -13.5394 1.2119 25 6 4.3727 -8.4275 0.0011 26 6 2.1972 -1.1967 -0.0049 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6564 2.1323 -0.0004 31 1 4.5107 2.8241 -1.0275 32 1 3.7388 3.2661 0.5143 33 1 5.2828 2.3806 0.5138 34 1 5.3552 0.0102 -0.0014 35 1 2.8604 -3.5970 0.8905 36 1 2.8604 -3.5977 -0.8894 37 1 2.9342 -6.1400 0.0018 38 1 6.7678 -6.1953 -0.0140 39 1 8.7597 -10.9571 -0.0016 40 1 3.3575 -8.7958 0.0023 41 1 1.6571 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139745169.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:19 Heat of formation + Delta-G solvation = 8.945578 kcal Electronic energy + Delta-G solvation = -24347.954089 eV Core-core repulsion = 20615.193414 eV Total energy + Delta-G solvation = -3732.760676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82122 -41.27635 -40.15581 -38.58385 -35.96714 -35.01677 -34.44129 -32.38656 -32.05373 -30.46313 -28.87975 -28.06633 -27.53297 -26.57912 -23.19206 -22.78025 -22.31071 -21.40944 -21.17748 -19.43142 -18.57694 -18.21185 -17.42212 -17.40252 -17.03357 -16.72490 -16.64795 -15.80622 -15.73446 -15.09363 -15.06062 -14.78653 -14.70019 -14.59758 -14.07141 -13.95682 -13.66764 -13.49253 -13.32062 -13.28023 -12.98391 -12.85658 -12.83609 -12.63992 -12.33041 -12.02585 -11.91395 -11.81557 -11.65604 -11.05518 -10.86176 -10.72352 -10.12185 -9.57044 -9.13231 -8.56676 -8.47732 -6.25652 0.35595 0.47708 1.17099 1.39253 1.46088 1.54259 1.60079 1.83766 2.13198 2.46867 2.64582 2.75772 2.92692 3.08612 3.64859 3.84982 3.91134 4.00030 4.12099 4.17896 4.33457 4.41636 4.43673 4.49892 4.58597 4.69962 4.82623 4.85554 4.89528 4.97614 4.99479 5.05520 5.13623 5.27987 5.33109 5.37982 5.40767 5.57496 5.68733 5.87654 5.95231 6.27827 6.40738 6.68834 6.72500 7.32239 7.45895 7.66214 8.51958 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039021 B = 0.002070 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.389804 B =13524.279904 C =14215.918887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.166 4.166 4 C -0.049 4.049 5 C -0.114 4.114 6 C -0.185 4.185 7 C 0.117 3.883 8 O -0.323 6.323 9 C 0.058 3.942 10 C 0.495 3.505 11 O -0.569 6.569 12 N -0.606 5.606 13 C -0.046 4.046 14 C -0.063 4.063 15 N -0.311 5.311 16 N -0.168 5.168 17 C -0.352 4.352 18 H 0.144 0.856 19 C -0.010 4.010 20 N -0.826 5.826 21 Si 1.021 2.979 22 H -0.238 1.238 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.075 4.075 26 C -0.223 4.223 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.425 0.575 38 H 0.163 0.837 39 H 0.276 0.724 40 H 0.194 0.806 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.965 19.170 -0.051 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.184 4.184 4 C -0.049 4.049 5 C -0.170 4.170 6 C -0.204 4.204 7 C 0.072 3.928 8 O -0.236 6.236 9 C -0.020 4.020 10 C 0.282 3.718 11 O -0.447 6.447 12 N -0.253 5.253 13 C -0.152 4.152 14 C -0.238 4.238 15 N -0.144 5.144 16 N 0.063 4.937 17 C -0.483 4.483 18 H 0.162 0.838 19 C -0.221 4.221 20 N -0.454 5.454 21 Si 0.839 3.161 22 H -0.161 1.161 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.225 4.225 26 C -0.241 4.241 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.164 0.836 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.264 0.736 38 H 0.180 0.820 39 H 0.086 0.914 40 H 0.211 0.789 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.662 18.516 -0.044 24.909 hybrid contribution -0.343 -0.383 -0.016 0.514 sum -17.005 18.133 -0.060 24.860 Atomic orbital electron populations 1.20878 0.88663 1.04040 1.03435 1.20093 0.97634 0.92005 0.95061 1.21161 0.93154 0.98707 1.05382 1.19992 0.94368 0.94736 0.95808 1.20866 1.00051 0.92760 1.03359 1.20474 1.00325 0.90231 1.09337 1.19272 0.91633 0.85083 0.96829 1.86124 1.36005 1.12503 1.88962 1.22471 0.92211 0.80549 1.06775 1.20757 0.89143 0.84512 0.77374 1.90638 1.17902 1.85870 1.50283 1.42139 1.09587 1.02173 1.71437 1.17288 0.89593 0.86660 1.21630 1.24145 0.94134 0.96051 1.09466 1.78167 1.10261 0.98414 1.27512 1.44879 1.02705 1.05825 1.40299 1.20696 0.96785 0.77021 1.53813 0.83838 1.26934 0.93902 1.07087 0.94164 1.70416 0.98785 1.38792 1.37435 0.84514 0.80306 0.73123 0.78111 1.16059 1.19888 1.19886 1.22026 0.93523 0.89323 1.17652 1.21373 0.91761 1.00605 1.10371 0.89932 0.90493 0.90119 0.83646 0.90017 0.89522 0.91429 0.86367 0.85625 0.85634 0.73642 0.82050 0.91432 0.78921 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.05 -0.75 5.88 -19.88 -0.12 -0.87 16 3 C -0.17 -2.64 9.35 22.28 0.21 -2.43 16 4 C -0.05 -0.92 5.88 -19.88 -0.12 -1.03 16 5 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 6 C -0.18 -4.53 9.64 22.36 0.22 -4.31 16 7 C 0.12 2.95 6.69 22.50 0.15 3.10 16 8 O -0.32 -9.77 9.67 -73.44 -0.71 -10.48 16 9 C 0.06 1.33 5.22 71.24 0.37 1.70 16 10 C 0.50 17.23 7.88 87.66 0.69 17.92 16 11 O -0.57 -26.76 13.65 15.96 0.22 -26.54 16 12 N -0.61 -19.91 5.47 -303.93 -1.66 -21.57 16 13 C -0.05 -2.09 6.90 37.73 0.26 -1.83 16 14 C -0.06 -3.52 10.85 85.42 0.93 -2.59 16 15 N -0.31 -19.14 10.40 -56.47 -0.59 -19.73 16 16 N -0.17 -9.35 3.74 -190.02 -0.71 -10.06 16 17 C -0.35 -18.58 10.25 84.01 0.86 -17.71 16 18 H 0.14 6.48 7.83 -2.91 -0.02 6.46 16 19 C -0.01 -0.50 5.50 84.95 0.47 -0.03 16 20 N -0.83 -48.36 11.81 21.66 0.26 -48.10 16 21 Si 1.02 38.66 29.55 68.60 2.03 40.69 16 22 H -0.24 -7.96 7.11 99.48 0.71 -7.25 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 25 C -0.07 -3.40 11.49 83.38 0.96 -2.44 16 26 C -0.22 -4.15 8.69 22.36 0.19 -3.96 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.78 8.09 -2.39 -0.02 0.77 16 33 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.13 1.97 7.67 -2.39 -0.02 1.96 16 36 H 0.13 1.97 7.65 -2.39 -0.02 1.95 16 37 H 0.43 9.07 8.82 -92.71 -0.82 8.26 16 38 H 0.16 9.32 5.92 -2.91 -0.02 9.31 16 39 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.19 6.64 8.06 -2.91 -0.02 6.62 16 41 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 Total: -1.00 -83.99 355.14 5.58 -78.41 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.25 Total: 32.94 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 6.50 Total: -15.54 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -2.70 Total: -99.47 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.49 Total: -37.03 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -83.99 5.58 -78.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139745169.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.358 kcal (2) G-P(sol) polarization free energy of solvation -83.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds