Wall clock time and date at job start Tue Mar 31 2020 11:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.21304 * 119.99916 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.40595 * 120.00267 * 180.02562 * 13 11 10 15 15 C 1.40653 * 126.08275 * 359.69386 * 14 13 11 16 16 N 1.30901 * 108.38440 * 179.81529 * 15 14 13 17 17 N 1.40068 * 108.41032 * 0.44140 * 16 15 14 18 18 C 1.37322 * 126.06933 * 179.69813 * 17 16 15 19 19 H 1.07997 * 120.00102 * 180.02562 * 18 17 16 20 20 C 1.38993 * 120.00237 * 0.02562 * 18 17 16 21 21 N 1.31295 * 119.99587 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47060 * 120.00181 * 22 20 18 25 25 H 1.48505 * 109.47203 * 240.00238 * 22 20 18 26 26 C 1.35681 * 126.08172 * 179.97438 * 14 13 11 27 27 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 28 28 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 32 32 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 34 34 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 35 35 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 36 36 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 37 37 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 38 38 H 0.97006 * 119.99889 * 359.97438 * 13 11 10 39 39 H 1.08001 * 125.80223 * 359.96172 * 15 14 13 40 40 H 0.97001 * 119.99866 * 180.02562 * 21 20 18 41 41 H 1.08001 * 126.24956 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2231 -4.6376 -0.0648 13 7 0.0369 -4.9523 2.1235 14 6 -0.6576 -6.1600 1.9341 15 6 -0.9940 -6.7367 0.6962 16 7 -1.6321 -7.8571 0.9225 17 7 -1.7371 -8.0343 2.3079 18 6 -2.3453 -9.0882 2.9444 19 1 -2.3698 -9.1261 4.0234 20 6 -2.9295 -10.1063 2.2000 21 7 -2.8993 -10.0605 0.8882 22 14 -3.7574 -11.5395 3.0658 23 1 -3.6552 -11.3557 4.5358 24 1 -5.1881 -11.5961 2.6718 25 1 -3.0867 -12.8064 2.6780 26 6 -1.1273 -6.9737 2.9130 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 0.0107 32 1 5.3552 0.0039 0.0106 33 1 4.5238 -2.8172 1.0286 34 1 3.7611 -3.2610 -0.5173 35 1 5.3001 -2.3666 -0.5085 36 1 2.1104 -3.1353 1.8209 37 1 0.5677 -2.2476 1.8171 38 1 0.2194 -4.6335 3.0213 39 1 -0.7628 -6.3263 -0.2757 40 1 -3.3072 -10.7708 0.3686 41 1 -1.0354 -6.8118 3.9769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139770834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:23 Heat of formation + Delta-G solvation = 34.938206 kcal Electronic energy + Delta-G solvation = -24956.573676 eV Core-core repulsion = 21224.940126 eV Total energy + Delta-G solvation = -3731.633551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51439 -39.81882 -38.59766 -37.09646 -34.20401 -33.78164 -33.16628 -31.40217 -30.30402 -29.17330 -27.54155 -26.83022 -26.49767 -24.68410 -22.04756 -21.13937 -21.08219 -20.43483 -19.42706 -17.99204 -17.38542 -16.77537 -16.72151 -15.71327 -15.46162 -15.09205 -15.05580 -14.82386 -14.15824 -13.98632 -13.63185 -13.53491 -13.29581 -13.18394 -12.92005 -12.88748 -12.84523 -12.68971 -12.08037 -11.74383 -11.68681 -11.51947 -11.44024 -11.34602 -11.27049 -10.92616 -10.50964 -10.18682 -10.00710 -9.17686 -9.15530 -8.80829 -8.80395 -8.70598 -8.05817 -6.71370 -6.55513 -4.22805 0.96031 1.10323 2.78978 2.92787 3.01673 3.06029 3.11337 3.49336 3.66862 3.82601 4.13312 4.40715 4.56258 4.60697 4.72600 4.73300 4.97811 5.02001 5.03061 5.09791 5.16927 5.21349 5.30547 5.38597 5.46762 5.53255 5.59848 5.62576 5.94382 6.09519 6.22032 6.23412 6.24408 6.37876 6.43631 6.55045 6.88272 6.95390 7.10259 7.23521 7.41796 7.86262 8.15673 8.27043 8.62878 8.83192 9.37994 9.67230 10.40549 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002289 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.658028 B =12227.501274 C =12429.273985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.094 4.094 7 C -0.118 4.118 8 C 0.092 3.908 9 O -0.302 6.302 10 C 0.054 3.946 11 C 0.499 3.501 12 O -0.512 6.512 13 N -0.622 5.622 14 C -0.059 4.059 15 C -0.033 4.033 16 N -0.260 5.260 17 N -0.143 5.143 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.045 3.955 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.083 4.083 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.397 0.603 39 H 0.176 0.824 40 H 0.274 0.726 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.069 19.280 3.524 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.174 4.174 8 C 0.048 3.952 9 O -0.218 6.218 10 C -0.024 4.024 11 C 0.283 3.717 12 O -0.387 6.387 13 N -0.267 5.267 14 C -0.164 4.164 15 C -0.208 4.208 16 N -0.091 5.091 17 N 0.090 4.910 18 C -0.455 4.455 19 H 0.134 0.866 20 C -0.172 4.172 21 N -0.396 5.396 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.234 4.234 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.193 0.807 40 H 0.085 0.915 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.190 17.736 1.804 20.534 hybrid contribution 0.282 0.487 1.500 1.602 sum 10.472 18.223 3.304 21.276 Atomic orbital electron populations 1.20737 0.90461 1.02707 1.03076 1.20289 0.96909 0.92442 0.99895 1.20925 0.94177 0.97070 1.01405 1.21137 0.94233 0.98018 1.00231 1.20933 0.99805 0.91458 1.01385 1.20285 0.93002 0.96347 0.99863 1.20769 0.99774 0.94405 1.02490 1.18418 0.89419 0.85030 1.02343 1.86128 1.74424 1.34432 1.26833 1.22355 0.99832 0.94233 0.86000 1.19804 0.81333 0.85205 0.85346 1.90643 1.55232 1.69419 1.23416 1.42311 1.55141 1.21228 1.07991 1.17223 1.13237 0.91650 0.94319 1.24133 1.03734 0.95261 0.97687 1.78262 1.22880 1.16817 0.91140 1.44561 1.30225 1.12345 1.03904 1.19914 1.35072 0.98251 0.92266 0.86568 1.25653 0.96763 0.99248 0.95511 1.70229 1.33833 1.30688 1.04832 0.85762 0.78941 0.79865 0.79557 1.18700 1.19912 1.19919 1.21242 1.11374 0.94138 0.96675 0.90596 0.91191 0.91553 0.85715 0.85868 0.85723 0.91239 0.90248 0.91366 0.90294 0.90291 0.77018 0.80700 0.91495 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.79 36.01 0.35 -0.79 16 2 C -0.09 -1.05 5.89 -104.47 -0.62 -1.67 16 3 C -0.12 -1.07 9.70 -39.60 -0.38 -1.46 16 4 C -0.12 -0.99 10.04 -39.56 -0.40 -1.39 16 5 C -0.12 -1.07 9.70 -39.61 -0.38 -1.46 16 6 C -0.09 -1.05 5.89 -104.47 -0.62 -1.66 16 7 C -0.12 -1.19 9.79 36.01 0.35 -0.84 16 8 C 0.09 1.16 5.67 -39.22 -0.22 0.93 16 9 O -0.30 -4.48 7.86 -39.32 -0.31 -4.79 16 10 C 0.05 0.69 6.17 36.00 0.22 0.91 16 11 C 0.50 8.81 7.88 -10.99 -0.09 8.72 16 12 O -0.51 -11.49 13.65 -14.37 -0.20 -11.69 16 13 N -0.62 -10.85 5.47 -10.00 -0.05 -10.90 16 14 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 15 C -0.03 -0.87 10.85 -17.04 -0.18 -1.06 16 16 N -0.26 -7.63 10.40 30.80 0.32 -7.31 16 17 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 18 C -0.32 -8.54 10.25 -14.81 -0.15 -8.69 16 19 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 21 N -0.77 -21.62 11.81 55.50 0.66 -20.97 16 22 Si 0.93 18.94 29.55 -169.99 -5.02 13.92 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.82 7.23 -51.93 -0.38 0.44 16 38 H 0.40 5.10 8.83 -40.82 -0.36 4.74 16 39 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -34.91 354.08 -7.40 -42.31 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.11 Total: 9.49 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.98 Total: -11.43 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.88 Total: -43.15 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.51 Total: -16.48 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.91 -7.40 -42.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139770834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.252 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds