Wall clock time and date at job start Tue Mar 31 2020 11:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.21304 * 119.99916 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.40595 * 120.00267 * 180.02562 * 13 11 10 15 15 C 1.40653 * 126.08275 * 359.69386 * 14 13 11 16 16 N 1.30901 * 108.38440 * 179.81529 * 15 14 13 17 17 N 1.40068 * 108.41032 * 0.44140 * 16 15 14 18 18 C 1.37322 * 126.06933 * 179.69813 * 17 16 15 19 19 H 1.07997 * 120.00102 * 180.02562 * 18 17 16 20 20 C 1.38993 * 120.00237 * 0.02562 * 18 17 16 21 21 N 1.31295 * 119.99587 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47060 * 120.00181 * 22 20 18 25 25 H 1.48505 * 109.47203 * 240.00238 * 22 20 18 26 26 C 1.35681 * 126.08172 * 179.97438 * 14 13 11 27 27 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 28 28 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 32 32 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 34 34 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 35 35 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 36 36 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 37 37 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 38 38 H 0.97006 * 119.99889 * 359.97438 * 13 11 10 39 39 H 1.08001 * 125.80223 * 359.96172 * 15 14 13 40 40 H 0.97001 * 119.99866 * 180.02562 * 21 20 18 41 41 H 1.08001 * 126.24956 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2231 -4.6376 -0.0648 13 7 0.0369 -4.9523 2.1235 14 6 -0.6576 -6.1600 1.9341 15 6 -0.9940 -6.7367 0.6962 16 7 -1.6321 -7.8571 0.9225 17 7 -1.7371 -8.0343 2.3079 18 6 -2.3453 -9.0882 2.9444 19 1 -2.3698 -9.1261 4.0234 20 6 -2.9295 -10.1063 2.2000 21 7 -2.8993 -10.0605 0.8882 22 14 -3.7574 -11.5395 3.0658 23 1 -3.6552 -11.3557 4.5358 24 1 -5.1881 -11.5961 2.6718 25 1 -3.0867 -12.8064 2.6780 26 6 -1.1273 -6.9737 2.9130 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 0.0107 32 1 5.3552 0.0039 0.0106 33 1 4.5238 -2.8172 1.0286 34 1 3.7611 -3.2610 -0.5173 35 1 5.3001 -2.3666 -0.5085 36 1 2.1104 -3.1353 1.8209 37 1 0.5677 -2.2476 1.8171 38 1 0.2194 -4.6335 3.0213 39 1 -0.7628 -6.3263 -0.2757 40 1 -3.3072 -10.7708 0.3686 41 1 -1.0354 -6.8118 3.9769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139770834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:22 Heat of formation + Delta-G solvation = 12.831068 kcal Electronic energy + Delta-G solvation = -24957.532314 eV Core-core repulsion = 21224.940126 eV Total energy + Delta-G solvation = -3732.592188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78537 -41.25392 -40.10782 -38.09025 -35.93491 -34.99424 -34.52602 -32.35858 -32.10518 -30.56992 -28.99866 -27.58665 -27.53795 -26.52904 -23.05629 -22.74640 -22.06346 -21.82985 -21.23776 -19.42691 -18.67847 -18.18162 -17.66577 -17.40340 -16.83346 -16.33701 -16.30487 -15.98682 -15.50979 -15.28655 -14.94818 -14.84531 -14.64734 -14.35276 -14.03593 -13.87186 -13.82557 -13.58843 -13.48934 -13.30268 -12.93710 -12.85545 -12.84595 -12.46587 -12.28687 -12.10310 -12.02374 -11.88590 -11.04612 -10.91707 -10.84719 -10.67954 -10.11179 -9.52920 -9.48208 -8.55245 -8.47137 -6.24758 0.19395 0.38138 1.18823 1.40061 1.48128 1.59420 1.77167 1.84859 2.15465 2.48623 2.62895 2.85516 3.09155 3.14034 3.79047 3.83075 3.89384 4.07147 4.11606 4.15534 4.40114 4.43266 4.47554 4.56110 4.59662 4.62549 4.72781 4.75867 4.87092 4.93471 5.00072 5.06500 5.18337 5.28794 5.32760 5.43065 5.52754 5.53261 5.62958 5.85527 5.95892 6.29535 6.51156 6.71697 6.74244 7.35216 7.46691 7.67310 8.52578 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.002289 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.658028 B =12227.501274 C =12429.273985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.110 4.110 7 C -0.115 4.115 8 C 0.063 3.937 9 O -0.332 6.332 10 C 0.065 3.935 11 C 0.498 3.502 12 O -0.565 6.565 13 N -0.610 5.610 14 C -0.043 4.043 15 C -0.062 4.062 16 N -0.311 5.311 17 N -0.168 5.168 18 C -0.352 4.352 19 H 0.143 0.857 20 C -0.009 4.009 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.239 1.239 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.077 4.077 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.423 0.577 39 H 0.163 0.837 40 H 0.276 0.724 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 21.466 6.415 25.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.110 4.110 3 C -0.136 4.136 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.172 4.172 8 C 0.020 3.980 9 O -0.249 6.249 10 C -0.012 4.012 11 C 0.285 3.715 12 O -0.443 6.443 13 N -0.257 5.257 14 C -0.149 4.149 15 C -0.237 4.237 16 N -0.143 5.143 17 N 0.063 4.937 18 C -0.483 4.483 19 H 0.161 0.839 20 C -0.220 4.220 21 N -0.454 5.454 22 Si 0.839 3.161 23 H -0.161 1.161 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.227 4.227 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.261 0.739 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.501 19.981 4.748 23.539 hybrid contribution 0.005 0.013 0.567 0.567 sum 11.506 19.994 5.315 23.673 Atomic orbital electron populations 1.20732 0.90382 1.03111 1.02641 1.20463 0.97251 0.92774 1.00558 1.21250 0.94811 0.97190 1.00356 1.21543 0.94118 0.99049 0.98376 1.21253 1.01082 0.90922 1.00350 1.20463 0.92628 0.97408 1.00509 1.20742 0.99926 0.93467 1.03016 1.18693 0.90153 0.84588 1.04593 1.86087 1.75139 1.35822 1.27803 1.22315 1.00863 0.91806 0.86228 1.20774 0.80193 0.86242 0.84325 1.90629 1.57075 1.70942 1.25680 1.42211 1.54358 1.19458 1.09696 1.17286 1.11977 0.92985 0.92700 1.24141 1.05003 0.95799 0.98787 1.78159 1.24600 1.18316 0.93231 1.44869 1.31550 1.13836 1.03459 1.20681 1.35447 0.98523 0.93647 0.83927 1.26924 0.96858 1.02222 0.96044 1.70416 1.35736 1.32154 1.07111 0.84517 0.77119 0.75094 0.79343 1.16121 1.19854 1.19866 1.22016 1.09402 0.92596 0.98728 0.91514 0.92701 0.89163 0.83348 0.82783 0.83359 0.90096 0.93223 0.89692 0.87297 0.87312 0.73917 0.81992 0.91435 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.79 71.24 0.70 -1.48 16 2 C -0.11 -2.28 5.89 -19.77 -0.12 -2.40 16 3 C -0.12 -1.82 9.70 22.26 0.22 -1.60 16 4 C -0.11 -1.50 10.04 22.28 0.22 -1.27 16 5 C -0.12 -1.81 9.70 22.25 0.22 -1.60 16 6 C -0.11 -2.27 5.89 -19.77 -0.12 -2.39 16 7 C -0.11 -2.22 9.79 71.24 0.70 -1.52 16 8 C 0.06 1.54 5.67 22.51 0.13 1.67 16 9 O -0.33 -9.92 7.86 -73.35 -0.58 -10.50 16 10 C 0.07 1.60 6.17 71.23 0.44 2.04 16 11 C 0.50 17.62 7.88 87.66 0.69 18.31 16 12 O -0.57 -26.58 13.65 15.93 0.22 -26.37 16 13 N -0.61 -20.61 5.47 -303.93 -1.66 -22.27 16 14 C -0.04 -2.01 6.90 37.73 0.26 -1.75 16 15 C -0.06 -3.49 10.85 85.42 0.93 -2.56 16 16 N -0.31 -19.15 10.40 -56.47 -0.59 -19.73 16 17 N -0.17 -9.39 3.74 -190.01 -0.71 -10.10 16 18 C -0.35 -18.65 10.25 84.01 0.86 -17.78 16 19 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 20 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 21 N -0.83 -48.40 11.81 21.66 0.26 -48.15 16 22 Si 1.02 38.76 29.55 68.60 2.03 40.79 16 23 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.08 -3.54 11.49 83.38 0.96 -2.58 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.20 6.30 -2.39 -0.02 1.19 16 29 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.25 7.53 -2.38 -0.02 1.23 16 35 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.11 2.03 7.23 -2.39 -0.02 2.01 16 38 H 0.42 9.70 8.83 -92.70 -0.82 8.89 16 39 H 0.16 9.36 5.92 -2.91 -0.02 9.35 16 40 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.19 6.73 8.06 -2.91 -0.02 6.71 16 Total: -1.00 -82.36 354.08 5.77 -76.60 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.25 Total: 34.66 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 6.55 Total: -14.92 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -2.70 Total: -100.26 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.36 Total: -36.86 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -82.36 5.77 -76.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139770834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.427 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds