Wall clock time and date at job start Tue Mar 31 2020 11:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.94738 * 2 1 4 4 C 1.38142 * 120.05532 * 179.72339 * 3 2 1 5 5 C 1.38736 * 119.94101 * 0.27474 * 4 3 2 6 6 O 1.35905 * 120.04928 * 179.97438 * 5 4 3 7 7 C 1.42899 * 117.00423 * 5.43575 * 6 5 4 8 8 H 1.08992 * 109.46779 * 35.77957 * 7 6 5 9 9 C 1.52998 * 109.46973 * 275.77849 * 7 6 5 10 10 C 1.50703 * 109.47188 * 155.77929 * 7 6 5 11 11 O 1.21305 * 119.99570 * 4.99896 * 10 7 6 12 12 N 1.34773 * 119.99762 * 184.99795 * 10 7 6 13 13 C 1.40598 * 119.99522 * 180.02562 * 12 10 7 14 14 C 1.40652 * 126.08537 * 0.02562 * 13 12 10 15 15 N 1.30909 * 108.38468 * 179.97438 * 14 13 12 16 16 N 1.40062 * 108.40960 * 0.02562 * 15 14 13 17 17 C 1.37327 * 126.07034 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00182 * 185.85581 * 17 16 15 19 19 C 1.38984 * 119.99793 * 5.86078 * 17 16 15 20 20 N 1.31300 * 120.00174 * 354.10085 * 19 17 16 21 21 Si 1.86799 * 120.00010 * 174.10467 * 19 17 16 22 22 H 1.48501 * 109.47562 * 94.96503 * 21 19 17 23 23 H 1.48502 * 109.46959 * 214.96639 * 21 19 17 24 24 H 1.48500 * 109.47254 * 334.96059 * 21 19 17 25 25 C 1.35685 * 126.07896 * 179.71914 * 13 12 10 26 26 C 1.38724 * 119.89220 * 0.02562 * 5 4 3 27 27 C 1.38144 * 119.94523 * 0.02562 * 26 5 4 28 28 H 1.09005 * 109.47087 * 89.99411 * 1 2 3 29 29 H 1.08997 * 109.47572 * 210.00082 * 1 2 3 30 30 H 1.09004 * 109.46837 * 330.00561 * 1 2 3 31 31 H 1.07998 * 119.96847 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.02893 * 180.29947 * 4 3 2 33 33 H 1.08995 * 109.47248 * 300.00175 * 9 7 6 34 34 H 1.09005 * 109.47095 * 59.99962 * 9 7 6 35 35 H 1.09003 * 109.47105 * 179.97438 * 9 7 6 36 36 H 0.96995 * 120.00258 * 0.02562 * 12 10 7 37 37 H 1.07995 * 125.80322 * 0.02727 * 14 13 12 38 38 H 0.96997 * 119.99939 * 180.02562 * 20 19 17 39 39 H 1.07997 * 126.24510 * 359.97438 * 25 13 12 40 40 H 1.08002 * 120.02952 * 179.97438 * 26 5 4 41 41 H 1.08004 * 119.97379 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5787 1.2007 0.0058 5 6 4.2734 -0.0002 0.0058 6 8 5.6324 -0.0002 0.0110 7 6 6.2808 1.2670 0.1368 8 1 5.7004 1.9077 0.8006 9 6 6.3881 1.9239 -1.2409 10 6 7.6612 1.0704 0.7085 11 8 8.0858 -0.0502 0.8966 12 7 8.4239 2.1397 1.0107 13 6 9.7120 1.9562 1.5437 14 6 10.3295 0.7212 1.8116 15 7 11.5218 0.9531 2.2999 16 7 11.7118 2.3393 2.3635 17 6 12.8367 2.9811 2.8202 18 1 12.8437 4.0569 2.9149 19 6 13.9661 2.2462 3.1606 20 7 13.9213 0.9339 3.1566 21 14 15.5479 3.1252 3.6239 22 1 15.6247 3.2607 5.1007 23 1 16.7110 2.3404 3.1376 24 1 15.5655 4.4734 3.0016 25 6 10.5827 2.9391 1.8856 26 6 3.5785 -1.2009 -0.0005 27 6 2.1971 -1.1982 -0.0073 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 1.6559 2.1326 -0.0004 32 1 4.1173 2.1367 0.0107 33 1 6.9685 1.2831 -1.9047 34 1 5.3897 2.0661 -1.6544 35 1 6.8823 2.8907 -1.1448 36 1 8.0842 3.0357 0.8606 37 1 9.8944 -0.2526 1.6423 38 1 14.7095 0.4210 3.3945 39 1 10.4125 4.0019 1.7976 40 1 4.1171 -2.1370 -0.0009 41 1 1.6557 -2.1327 -0.0118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139793572.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:28 Heat of formation + Delta-G solvation = 37.280193 kcal Electronic energy + Delta-G solvation = -24775.409814 eV Core-core repulsion = 21043.877820 eV Total energy + Delta-G solvation = -3731.531994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68097 -39.80957 -38.74691 -37.48530 -34.28418 -33.32491 -32.57128 -31.62143 -30.91681 -30.19884 -27.74941 -26.68822 -25.18896 -24.21475 -23.07742 -21.60617 -20.97350 -20.14863 -19.42663 -18.42774 -17.49400 -17.03181 -15.74526 -15.63965 -15.54665 -15.44297 -15.13528 -14.51269 -14.46018 -14.14662 -13.81419 -13.72669 -13.64761 -13.24193 -13.10034 -12.91601 -12.61601 -12.44983 -12.20616 -11.80456 -11.71128 -11.67124 -11.43253 -11.27486 -11.01957 -10.96494 -10.87281 -10.53788 -10.18963 -9.21895 -9.18652 -9.13876 -8.81841 -8.17919 -8.07389 -6.73722 -6.57314 -4.24457 1.15150 1.24189 2.71529 2.74408 3.00106 3.04917 3.10127 3.56574 3.64701 3.72300 3.89156 4.37490 4.51223 4.59580 4.65399 4.68169 4.78668 4.85299 5.00201 5.01815 5.06362 5.14576 5.24667 5.34478 5.44571 5.47563 5.52515 5.67858 5.85734 5.90741 6.11845 6.18853 6.21804 6.41083 6.42070 6.60168 6.85698 6.93577 7.06727 7.21378 7.31116 7.84548 8.11717 8.24714 8.59871 8.79076 9.36372 9.65273 10.38959 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.044872 B = 0.002178 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.851484 B =12850.935749 C =13129.137105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.080 4.080 4 C -0.210 4.210 5 C 0.131 3.869 6 O -0.282 6.282 7 C 0.072 3.928 8 H 0.094 0.906 9 C -0.176 4.176 10 C 0.502 3.498 11 O -0.512 6.512 12 N -0.619 5.619 13 C -0.061 4.061 14 C -0.032 4.032 15 N -0.260 5.260 16 N -0.142 5.142 17 C -0.324 4.324 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.082 4.082 26 C -0.146 4.146 27 C -0.080 4.080 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.176 0.824 38 H 0.275 0.725 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.539 3.796 -7.083 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.098 4.098 4 C -0.228 4.228 5 C 0.085 3.915 6 O -0.194 6.194 7 C 0.012 3.988 8 H 0.112 0.888 9 C -0.233 4.233 10 C 0.286 3.714 11 O -0.387 6.387 12 N -0.263 5.263 13 C -0.166 4.166 14 C -0.207 4.207 15 N -0.091 5.091 16 N 0.090 4.910 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.171 4.171 20 N -0.395 5.395 21 Si 0.758 3.242 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.233 4.233 26 C -0.165 4.165 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.230 0.770 37 H 0.193 0.807 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.866 2.072 -6.462 20.994 hybrid contribution -0.295 1.575 -0.191 1.613 sum -20.162 3.647 -6.653 21.542 Atomic orbital electron populations 1.20703 0.91202 1.02547 1.02005 1.19820 0.96138 0.93114 1.04150 1.20801 0.93216 0.97635 0.98185 1.21315 0.95382 0.97221 1.08917 1.19114 0.82453 0.94267 0.95670 1.86240 1.15759 1.30226 1.87166 1.22152 0.92941 0.85122 0.98585 0.88793 1.22347 1.03761 1.01537 0.95690 1.19738 0.85881 0.85372 0.80429 1.90643 1.72257 1.23656 1.52100 1.42301 1.14204 1.07856 1.61893 1.17229 0.87093 0.94373 1.17905 1.24122 0.93398 0.97707 1.05501 1.78262 1.15653 0.91108 1.24126 1.44556 1.08773 1.03902 1.33726 1.19869 0.88224 0.92530 1.44981 0.86589 1.25654 0.99998 0.95531 0.95932 1.70224 1.29596 1.05125 1.34557 0.85820 0.79866 0.79434 0.79076 1.19658 1.20029 1.18747 1.21238 0.90712 0.96688 1.14640 1.20483 0.93709 0.96602 1.05705 1.20844 0.92910 0.97765 0.98328 0.91562 0.91739 0.91815 0.85915 0.85182 0.90485 0.90894 0.90187 0.77013 0.80738 0.91430 0.83633 0.84943 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.13 -1.18 5.88 -104.60 -0.62 -1.80 16 3 C -0.08 -0.73 9.69 -39.61 -0.38 -1.11 16 4 C -0.21 -2.17 8.21 -39.43 -0.32 -2.50 16 5 C 0.13 1.67 6.59 -39.22 -0.26 1.41 16 6 O -0.28 -4.27 9.34 -39.30 -0.37 -4.63 16 7 C 0.07 0.94 2.64 -27.88 -0.07 0.87 16 8 H 0.09 0.98 6.36 -51.93 -0.33 0.65 16 9 C -0.18 -1.78 9.11 37.16 0.34 -1.44 16 10 C 0.50 8.98 7.15 -10.99 -0.08 8.90 16 11 O -0.51 -11.62 13.66 -14.32 -0.20 -11.81 16 12 N -0.62 -10.76 5.43 -9.99 -0.05 -10.81 16 13 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 14 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 15 N -0.26 -7.64 10.42 30.80 0.32 -7.32 16 16 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 17 C -0.32 -8.55 10.24 -14.81 -0.15 -8.70 16 18 H 0.12 2.72 7.84 -52.49 -0.41 2.31 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.57 11.84 55.49 0.66 -20.91 16 21 Si 0.93 18.89 29.56 -169.99 -5.02 13.86 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 26 C -0.15 -1.71 9.99 -39.44 -0.39 -2.11 16 27 C -0.08 -0.77 9.70 -39.60 -0.38 -1.15 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.10 5.40 -52.49 -0.28 0.82 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.62 6.83 -51.93 -0.35 0.26 16 35 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.40 5.06 8.61 -40.82 -0.35 4.71 16 37 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 38 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -34.95 351.11 -7.39 -42.34 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.96 Total: 9.87 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.01 Total: -11.95 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.88 Total: -42.98 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.56 Total: -16.44 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.95 -7.39 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139793572.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.624 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds