Wall clock time and date at job start Tue Mar 31 2020 11:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38284 * 119.96997 * 2 1 4 4 C 1.38250 * 120.11015 * 179.97438 * 3 2 1 5 5 C 1.38162 * 120.05371 * 0.02581 * 4 3 2 6 6 C 1.38708 * 119.94695 * 0.22819 * 5 4 3 7 7 O 1.35902 * 120.06010 * 179.72680 * 6 5 4 8 8 C 1.42896 * 117.00084 * 174.63885 * 7 6 5 9 9 H 1.09001 * 109.47494 * 324.70013 * 8 7 6 10 10 C 1.52997 * 109.47130 * 84.70514 * 8 7 6 11 11 C 1.50703 * 109.46886 * 204.70248 * 8 7 6 12 12 O 1.21300 * 120.00081 * 0.02562 * 11 8 7 13 13 N 1.34779 * 119.99982 * 180.02562 * 11 8 7 14 14 C 1.40595 * 119.99898 * 179.97438 * 13 11 8 15 15 C 1.40645 * 126.08315 * 0.02562 * 14 13 11 16 16 N 1.30907 * 108.38771 * 180.02562 * 15 14 13 17 17 N 1.40071 * 108.40431 * 359.97438 * 16 15 14 18 18 C 1.37327 * 126.06749 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99832 * 179.97438 * 18 17 16 20 20 C 1.38984 * 119.99852 * 359.97438 * 18 17 16 21 21 N 1.31290 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99736 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47182 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46947 * 120.00307 * 22 20 18 25 25 H 1.48501 * 109.46947 * 240.00046 * 22 20 18 26 26 C 1.35679 * 126.07707 * 179.71620 * 14 13 11 27 27 C 1.38119 * 119.97317 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47153 * 89.99820 * 1 2 3 29 29 H 1.08999 * 109.47290 * 209.99922 * 1 2 3 30 30 H 1.09004 * 109.46988 * 329.99875 * 1 2 3 31 31 H 1.07999 * 119.94661 * 0.02679 * 3 2 1 32 32 H 1.08001 * 119.97512 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.02867 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47406 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.47182 * 299.99937 * 10 8 7 36 36 H 1.08999 * 109.47616 * 59.99861 * 10 8 7 37 37 H 0.96998 * 119.99671 * 0.02562 * 13 11 8 38 38 H 1.08000 * 125.80376 * 0.02562 * 15 14 13 39 39 H 0.96999 * 120.00049 * 179.97438 * 21 20 18 40 40 H 1.07999 * 126.25362 * 359.97227 * 26 14 13 41 41 H 1.08000 * 120.02676 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1958 -0.0048 7 8 4.2658 -2.3718 -0.0104 8 6 3.4941 -3.5691 0.1033 9 1 2.6434 -3.3920 0.7614 10 6 2.9906 -3.9846 -1.2804 11 6 4.3524 -4.6673 0.6762 12 8 5.5109 -4.4463 0.9598 13 7 3.8328 -5.8952 0.8735 14 6 4.6337 -6.9199 1.4075 15 6 5.9852 -6.8062 1.7797 16 7 6.3878 -7.9665 2.2327 17 7 5.3137 -8.8632 2.1686 18 6 5.3366 -10.1811 2.5538 19 1 4.4468 -10.7862 2.4616 20 6 6.5049 -10.7362 3.0623 21 7 7.5868 -10.0008 3.1740 22 14 6.5359 -12.5288 3.5870 23 1 5.1984 -13.1336 3.3622 24 1 7.5514 -13.2609 2.7882 25 1 6.8823 -12.6168 5.0283 26 6 4.2385 -8.1929 1.6610 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6565 2.1324 0.0004 32 1 4.1176 2.1382 0.0010 33 1 5.3552 0.0103 0.0005 34 1 2.4023 -4.8981 -1.1938 35 1 2.3698 -3.1902 -1.6949 36 1 3.8412 -4.1617 -1.9386 37 1 2.9065 -6.0720 0.6464 38 1 6.5882 -5.9134 1.7045 39 1 8.4020 -10.3882 3.5292 40 1 3.2537 -8.6020 1.4899 41 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139793721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:30 Heat of formation + Delta-G solvation = 37.414760 kcal Electronic energy + Delta-G solvation = -24912.610112 eV Core-core repulsion = 21181.083953 eV Total energy + Delta-G solvation = -3731.526159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69651 -39.81158 -38.73169 -37.42693 -34.29471 -33.39051 -32.99579 -31.66687 -30.21741 -30.05892 -27.75209 -27.13481 -25.26992 -24.39492 -22.63180 -21.66312 -21.01903 -20.20550 -19.41351 -18.08516 -17.48021 -17.04362 -16.16581 -15.69036 -15.63013 -15.44077 -15.11412 -14.55526 -14.30298 -14.20446 -13.80655 -13.67668 -13.43097 -13.21416 -13.11374 -12.90975 -12.69069 -12.41662 -12.24148 -11.84635 -11.70036 -11.62914 -11.43295 -11.29315 -11.07327 -10.96903 -10.90065 -10.51815 -10.20438 -9.19383 -9.19135 -8.99287 -8.82063 -8.28978 -8.07532 -6.73715 -6.56791 -4.24347 1.13692 1.27637 2.68735 2.77064 2.99955 3.04805 3.10580 3.57737 3.64993 3.71598 3.88810 4.37591 4.46542 4.59657 4.62049 4.67693 4.82999 4.88509 5.01187 5.04679 5.07180 5.16445 5.28699 5.30475 5.39353 5.46413 5.52898 5.56226 5.89056 5.90236 6.15389 6.21745 6.25791 6.38507 6.41832 6.60926 6.85611 6.93465 7.06870 7.21432 7.31231 7.84542 8.11728 8.24720 8.59881 8.79148 9.36270 9.65358 10.39231 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.037112 B = 0.002296 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.287317 B =12193.271585 C =12618.328441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.156 4.156 6 C 0.139 3.861 7 O -0.281 6.281 8 C 0.072 3.928 9 H 0.096 0.904 10 C -0.176 4.176 11 C 0.502 3.498 12 O -0.512 6.512 13 N -0.618 5.618 14 C -0.060 4.060 15 C -0.032 4.032 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.045 3.955 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.083 4.083 27 C -0.214 4.214 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 15.896 -7.248 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.183 4.183 4 C -0.095 4.095 5 C -0.175 4.175 6 C 0.094 3.906 7 O -0.193 6.193 8 C 0.012 3.988 9 H 0.113 0.887 10 C -0.234 4.234 11 C 0.286 3.714 12 O -0.387 6.387 13 N -0.262 5.262 14 C -0.166 4.166 15 C -0.208 4.208 16 N -0.091 5.091 17 N 0.090 4.910 18 C -0.455 4.455 19 H 0.135 0.865 20 C -0.172 4.172 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.234 4.234 27 C -0.233 4.233 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.246 15.342 -6.499 20.678 hybrid contribution -1.448 -0.479 -0.241 1.544 sum -13.693 14.863 -6.740 21.304 Atomic orbital electron populations 1.20822 0.91082 1.02919 1.02437 1.19694 0.95934 0.92519 0.96742 1.20916 0.94228 0.97403 1.05704 1.20940 0.94074 0.97189 0.97272 1.20483 1.00740 0.89653 1.06618 1.19100 0.90521 0.86110 0.94910 1.86241 1.34633 1.11293 1.87148 1.22161 0.93912 0.84206 0.98562 0.88678 1.22353 1.02714 1.02648 0.95644 1.19743 0.88215 0.82788 0.80693 1.90642 1.17018 1.81025 1.49978 1.42308 1.13544 1.08431 1.61965 1.17221 0.93144 0.88348 1.17846 1.24127 0.93378 0.98220 1.05058 1.78272 1.08690 0.97439 1.24670 1.44570 1.04954 1.07659 1.33769 1.19921 0.99772 0.82525 1.43280 0.86541 1.25654 0.94751 1.00765 0.96005 1.70224 1.00641 1.35675 1.32997 0.85760 0.79198 0.80447 0.78710 1.18689 1.19900 1.19906 1.21234 0.94668 0.92451 1.15031 1.21181 0.92978 0.98997 1.10154 0.90977 0.91449 0.91371 0.86113 0.85403 0.85023 0.90204 0.90908 0.90480 0.77016 0.80733 0.91471 0.83639 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 3 C -0.16 -1.47 9.70 -39.56 -0.38 -1.86 16 4 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 5 C -0.16 -1.84 9.99 -39.44 -0.39 -2.23 16 6 C 0.14 1.79 6.60 -39.22 -0.26 1.53 16 7 O -0.28 -4.27 9.33 -39.34 -0.37 -4.64 16 8 C 0.07 0.94 2.65 -27.88 -0.07 0.87 16 9 H 0.10 1.01 6.31 -51.93 -0.33 0.68 16 10 C -0.18 -1.77 9.06 37.16 0.34 -1.43 16 11 C 0.50 8.99 7.20 -10.98 -0.08 8.91 16 12 O -0.51 -11.63 13.65 -14.37 -0.20 -11.83 16 13 N -0.62 -10.76 5.36 -10.00 -0.05 -10.81 16 14 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 15 C -0.03 -0.86 10.85 -17.04 -0.18 -1.05 16 16 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 17 N -0.14 -3.89 3.74 -11.41 -0.04 -3.94 16 18 C -0.32 -8.51 10.25 -14.81 -0.15 -8.66 16 19 H 0.12 2.74 7.83 -52.48 -0.41 2.32 16 20 C 0.05 1.17 5.50 -17.51 -0.10 1.08 16 21 N -0.77 -21.57 11.81 55.49 0.66 -20.92 16 22 Si 0.93 18.89 29.55 -169.99 -5.02 13.87 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 26 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 27 C -0.21 -2.27 7.89 -39.43 -0.31 -2.58 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.08 0.63 7.56 -51.93 -0.39 0.24 16 35 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.40 5.07 8.24 -40.82 -0.34 4.73 16 38 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 41 H 0.13 1.14 5.43 -52.49 -0.28 0.86 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -34.99 350.36 -7.38 -42.37 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.93 Total: 10.00 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.02 Total: -12.09 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.88 Total: -42.96 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.56 Total: -16.47 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.99 -7.38 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139793721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.784 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds