Wall clock time and date at job start Tue Mar 31 2020 11:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38284 * 119.96997 * 2 1 4 4 C 1.38250 * 120.11015 * 179.97438 * 3 2 1 5 5 C 1.38162 * 120.05371 * 0.02581 * 4 3 2 6 6 C 1.38708 * 119.94695 * 0.22819 * 5 4 3 7 7 O 1.35902 * 120.06010 * 179.72680 * 6 5 4 8 8 C 1.42896 * 117.00084 * 174.63885 * 7 6 5 9 9 H 1.09001 * 109.47494 * 324.70013 * 8 7 6 10 10 C 1.52997 * 109.47130 * 84.70514 * 8 7 6 11 11 C 1.50703 * 109.46886 * 204.70248 * 8 7 6 12 12 O 1.21300 * 120.00081 * 0.02562 * 11 8 7 13 13 N 1.34779 * 119.99982 * 180.02562 * 11 8 7 14 14 C 1.40595 * 119.99898 * 179.97438 * 13 11 8 15 15 C 1.40645 * 126.08315 * 0.02562 * 14 13 11 16 16 N 1.30907 * 108.38771 * 180.02562 * 15 14 13 17 17 N 1.40071 * 108.40431 * 359.97438 * 16 15 14 18 18 C 1.37327 * 126.06749 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99832 * 179.97438 * 18 17 16 20 20 C 1.38984 * 119.99852 * 359.97438 * 18 17 16 21 21 N 1.31290 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99736 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47182 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46947 * 120.00307 * 22 20 18 25 25 H 1.48501 * 109.46947 * 240.00046 * 22 20 18 26 26 C 1.35679 * 126.07707 * 179.71620 * 14 13 11 27 27 C 1.38119 * 119.97317 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47153 * 89.99820 * 1 2 3 29 29 H 1.08999 * 109.47290 * 209.99922 * 1 2 3 30 30 H 1.09004 * 109.46988 * 329.99875 * 1 2 3 31 31 H 1.07999 * 119.94661 * 0.02679 * 3 2 1 32 32 H 1.08001 * 119.97512 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.02867 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47406 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.47182 * 299.99937 * 10 8 7 36 36 H 1.08999 * 109.47616 * 59.99861 * 10 8 7 37 37 H 0.96998 * 119.99671 * 0.02562 * 13 11 8 38 38 H 1.08000 * 125.80376 * 0.02562 * 15 14 13 39 39 H 0.96999 * 120.00049 * 179.97438 * 21 20 18 40 40 H 1.07999 * 126.25362 * 359.97227 * 26 14 13 41 41 H 1.08000 * 120.02676 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0005 6 6 3.5846 -1.1958 -0.0048 7 8 4.2658 -2.3718 -0.0104 8 6 3.4941 -3.5691 0.1033 9 1 2.6434 -3.3920 0.7614 10 6 2.9906 -3.9846 -1.2804 11 6 4.3524 -4.6673 0.6762 12 8 5.5109 -4.4463 0.9598 13 7 3.8328 -5.8952 0.8735 14 6 4.6337 -6.9199 1.4075 15 6 5.9852 -6.8062 1.7797 16 7 6.3878 -7.9665 2.2327 17 7 5.3137 -8.8632 2.1686 18 6 5.3366 -10.1811 2.5538 19 1 4.4468 -10.7862 2.4616 20 6 6.5049 -10.7362 3.0623 21 7 7.5868 -10.0008 3.1740 22 14 6.5359 -12.5288 3.5870 23 1 5.1984 -13.1336 3.3622 24 1 7.5514 -13.2609 2.7882 25 1 6.8823 -12.6168 5.0283 26 6 4.2385 -8.1929 1.6610 27 6 2.1971 -1.1965 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6565 2.1324 0.0004 32 1 4.1176 2.1382 0.0010 33 1 5.3552 0.0103 0.0005 34 1 2.4023 -4.8981 -1.1938 35 1 2.3698 -3.1902 -1.6949 36 1 3.8412 -4.1617 -1.9386 37 1 2.9065 -6.0720 0.6464 38 1 6.5882 -5.9134 1.7045 39 1 8.4020 -10.3882 3.5292 40 1 3.2537 -8.6020 1.4899 41 1 1.6571 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139793721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:29 Heat of formation + Delta-G solvation = 14.932234 kcal Electronic energy + Delta-G solvation = -24913.585028 eV Core-core repulsion = 21181.083953 eV Total energy + Delta-G solvation = -3732.501075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94023 -41.34743 -40.13992 -38.46298 -36.00001 -35.10754 -33.86640 -32.71658 -32.13599 -30.86902 -29.54265 -27.76244 -26.98054 -25.63983 -23.64160 -22.86348 -22.43050 -21.66922 -21.16578 -19.38602 -18.88526 -18.37931 -17.42415 -17.07570 -16.82496 -16.60951 -16.55522 -15.84639 -15.71990 -15.31634 -15.01936 -14.99683 -14.78030 -14.37941 -14.24699 -13.99163 -13.51647 -13.42861 -13.33159 -13.22255 -12.95699 -12.90097 -12.84168 -12.64309 -12.31467 -12.02462 -11.96650 -11.86198 -11.73206 -11.05598 -10.85280 -10.66887 -10.12200 -9.74267 -9.13147 -8.57000 -8.47613 -6.25547 0.38511 0.48174 1.16190 1.39546 1.44839 1.57141 1.60888 1.83555 2.13182 2.46312 2.57553 2.81350 2.89240 3.08837 3.56401 3.73193 3.85795 3.88798 3.98980 4.19864 4.37846 4.42886 4.44877 4.55759 4.60619 4.65960 4.75791 4.83487 4.89419 4.96270 4.99396 5.04942 5.11195 5.27738 5.31420 5.37141 5.39882 5.51821 5.67059 5.88521 5.95230 6.27497 6.41400 6.67126 6.72388 7.30080 7.45827 7.66000 8.52050 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.037112 B = 0.002296 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.287317 B =12193.271585 C =12618.328441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.183 4.183 6 C 0.111 3.889 7 O -0.317 6.317 8 C 0.082 3.918 9 H 0.127 0.873 10 C -0.169 4.169 11 C 0.497 3.503 12 O -0.567 6.567 13 N -0.604 5.604 14 C -0.045 4.045 15 C -0.063 4.063 16 N -0.311 5.311 17 N -0.167 5.167 18 C -0.351 4.351 19 H 0.145 0.855 20 C -0.009 4.009 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.238 1.238 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.075 4.075 27 C -0.218 4.218 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.423 0.577 38 H 0.162 0.838 39 H 0.276 0.724 40 H 0.194 0.806 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 15.910 -7.960 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.095 4.095 5 C -0.202 4.202 6 C 0.066 3.934 7 O -0.230 6.230 8 C 0.022 3.978 9 H 0.144 0.856 10 C -0.227 4.227 11 C 0.284 3.716 12 O -0.445 6.445 13 N -0.251 5.251 14 C -0.151 4.151 15 C -0.238 4.238 16 N -0.143 5.143 17 N 0.064 4.936 18 C -0.482 4.482 19 H 0.162 0.838 20 C -0.221 4.221 21 N -0.454 5.454 22 Si 0.839 3.161 23 H -0.160 1.160 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.225 4.225 27 C -0.236 4.236 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.262 0.738 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.211 0.789 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.650 15.385 -7.244 23.799 hybrid contribution -0.181 -0.259 -0.072 0.324 sum -16.831 15.126 -7.316 23.782 Atomic orbital electron populations 1.20888 0.88749 1.03955 1.03520 1.20121 0.97651 0.92078 0.95379 1.21320 0.94031 0.98636 1.04257 1.21235 0.94769 0.97154 0.96342 1.20667 1.00640 0.90676 1.08189 1.19362 0.91734 0.85333 0.96933 1.86184 1.36433 1.12469 1.87946 1.22185 0.92861 0.82127 1.00606 0.85589 1.22373 1.02480 1.04695 0.93118 1.20794 0.88060 0.83618 0.79127 1.90627 1.19862 1.82036 1.52000 1.42183 1.14291 1.07271 1.61347 1.17284 0.92161 0.89629 1.16036 1.24127 0.95528 0.97503 1.06655 1.78170 1.10951 0.98717 1.26469 1.44880 1.05487 1.08190 1.35074 1.20696 1.01202 0.82674 1.43676 0.83821 1.26926 0.93874 1.05984 0.95274 1.70413 1.01676 1.38390 1.34945 0.84518 0.80182 0.73618 0.77762 1.16045 1.19891 1.19898 1.22023 0.95567 0.92090 1.12849 1.21391 0.91909 1.00480 1.09814 0.89721 0.90709 0.90141 0.83449 0.83179 0.86188 0.87398 0.88694 0.92427 0.73832 0.82150 0.91436 0.78892 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16 2 C -0.05 -0.81 5.88 -19.88 -0.12 -0.93 16 3 C -0.16 -2.50 9.70 22.28 0.22 -2.29 16 4 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 5 C -0.18 -4.40 9.99 22.36 0.22 -4.18 16 6 C 0.11 2.83 6.60 22.51 0.15 2.98 16 7 O -0.32 -9.81 9.33 -73.42 -0.69 -10.49 16 8 C 0.08 2.03 2.65 29.85 0.08 2.11 16 9 H 0.13 2.33 6.31 -2.39 -0.02 2.31 16 10 C -0.17 -2.99 9.06 71.98 0.65 -2.33 16 11 C 0.50 17.84 7.20 87.66 0.63 18.47 16 12 O -0.57 -27.11 13.65 15.94 0.22 -26.90 16 13 N -0.60 -20.19 5.36 -303.92 -1.63 -21.82 16 14 C -0.05 -2.07 6.90 37.73 0.26 -1.81 16 15 C -0.06 -3.54 10.85 85.42 0.93 -2.61 16 16 N -0.31 -19.11 10.40 -56.47 -0.59 -19.70 16 17 N -0.17 -9.29 3.74 -190.01 -0.71 -10.00 16 18 C -0.35 -18.49 10.25 84.01 0.86 -17.63 16 19 H 0.14 6.47 7.83 -2.91 -0.02 6.44 16 20 C -0.01 -0.48 5.50 84.95 0.47 -0.01 16 21 N -0.83 -48.30 11.81 21.66 0.26 -48.05 16 22 Si 1.02 38.57 29.55 68.60 2.03 40.60 16 23 H -0.24 -7.93 7.11 99.48 0.71 -7.22 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.07 -3.40 11.49 83.37 0.96 -2.44 16 27 C -0.22 -4.12 7.89 22.36 0.18 -3.94 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.58 8.08 -2.39 -0.02 0.57 16 30 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.11 1.27 7.56 -2.39 -0.02 1.25 16 35 H 0.09 1.29 6.90 -2.39 -0.02 1.28 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 9.39 8.24 -92.71 -0.76 8.63 16 38 H 0.16 9.31 5.92 -2.91 -0.02 9.29 16 39 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 41 H 0.15 2.09 5.43 -2.91 -0.02 2.07 16 Total: -1.00 -83.28 350.36 5.62 -77.66 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.31 Total: 34.76 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 6.42 Total: -16.06 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.67 Total: -99.56 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.47 Total: -37.39 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -83.28 5.62 -77.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139793721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.588 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds