Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38279 * 119.97291 * 2 1 4 4 C 1.38243 * 120.11464 * 179.97438 * 3 2 1 5 5 C 1.38172 * 120.05216 * 0.02706 * 4 3 2 6 6 C 1.38706 * 119.94469 * 359.97438 * 5 4 3 7 7 O 1.35899 * 120.05441 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99956 * 185.35915 * 7 6 5 9 9 H 1.09008 * 109.47085 * 35.33023 * 8 7 6 10 10 C 1.52995 * 109.47529 * 275.32796 * 8 7 6 11 11 C 1.50707 * 109.47060 * 155.32553 * 8 7 6 12 12 O 1.21299 * 119.99615 * 5.00244 * 11 8 7 13 13 N 1.34777 * 119.99914 * 185.27821 * 11 8 7 14 14 C 1.40591 * 119.99758 * 179.72678 * 13 11 8 15 15 C 1.40650 * 126.08316 * 0.02562 * 14 13 11 16 16 N 1.30910 * 108.38590 * 180.02562 * 15 14 13 17 17 N 1.40068 * 108.40532 * 359.97438 * 16 15 14 18 18 C 1.37326 * 126.06875 * 180.02562 * 17 16 15 19 19 H 1.07990 * 120.00251 * 179.97438 * 18 17 16 20 20 C 1.38994 * 119.99583 * 359.97438 * 18 17 16 21 21 N 1.31289 * 120.00128 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99578 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46805 * 90.00106 * 22 20 18 24 24 H 1.48501 * 109.46848 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47112 * 329.99841 * 22 20 18 26 26 C 1.35681 * 126.07972 * 179.71225 * 14 13 11 27 27 C 1.38125 * 119.96864 * 180.30070 * 2 1 3 28 28 H 1.08995 * 109.46882 * 90.00066 * 1 2 3 29 29 H 1.09004 * 109.46792 * 210.00033 * 1 2 3 30 30 H 1.09001 * 109.46849 * 329.99450 * 1 2 3 31 31 H 1.08000 * 119.94326 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.97722 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.02765 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46891 * 59.99772 * 10 8 7 35 35 H 1.09003 * 109.47410 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47303 * 300.00254 * 10 8 7 37 37 H 0.96999 * 120.00016 * 359.72601 * 13 11 8 38 38 H 1.07995 * 125.80693 * 359.97438 * 15 14 13 39 39 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 40 40 H 1.08003 * 126.24528 * 0.02562 * 26 14 13 41 41 H 1.08002 * 120.03078 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2753 0.0070 0.0005 6 6 3.5846 -1.1959 0.0005 7 8 4.2659 -2.3718 0.0010 8 6 3.4942 -3.5686 -0.1180 9 1 2.6438 -3.3888 -0.7759 10 6 2.9899 -3.9899 1.2637 11 6 4.3527 -4.6646 -0.6951 12 8 5.5336 -4.4697 -0.8920 13 7 3.8072 -5.8594 -0.9975 14 6 4.6069 -6.8799 -1.5412 15 6 5.9828 -6.7941 -1.8203 16 7 6.3754 -7.9397 -2.3176 17 7 5.2706 -8.7989 -2.3748 18 6 5.2752 -10.0921 -2.8366 19 1 4.3623 -10.6690 -2.8361 20 6 6.4550 -10.6586 -3.3049 21 7 7.5647 -9.9571 -3.3060 22 14 6.4613 -12.4181 -3.9324 23 1 6.1715 -12.4251 -5.3888 24 1 7.7948 -13.0251 -3.6901 25 1 5.4229 -13.2025 -3.2172 26 6 4.1900 -8.1246 -1.8844 27 6 2.1971 -1.1966 -0.0063 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6566 2.1324 0.0004 32 1 4.1177 2.1381 0.0010 33 1 5.3553 0.0101 0.0005 34 1 2.3689 -3.1971 1.6810 35 1 2.4009 -4.9026 1.1728 36 1 3.8401 -4.1697 1.9215 37 1 2.8628 -6.0151 -0.8400 38 1 6.6086 -5.9299 -1.6537 39 1 8.3880 -10.3524 -3.6331 40 1 3.1856 -8.5102 -1.7900 41 1 1.6570 -2.1319 -0.0116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139793843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = 37.333299 kcal Electronic energy + Delta-G solvation = -24912.458661 eV Core-core repulsion = 21180.928969 eV Total energy + Delta-G solvation = -3731.529692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69492 -39.81074 -38.73098 -37.42772 -34.28424 -33.37866 -32.99977 -31.67124 -30.21884 -30.06034 -27.76300 -27.13748 -25.27624 -24.37946 -22.63191 -21.66211 -21.02000 -20.19669 -19.42125 -18.08417 -17.47877 -17.03388 -16.16586 -15.69142 -15.62461 -15.43650 -15.11867 -14.55045 -14.31907 -14.20764 -13.80023 -13.68468 -13.41774 -13.21702 -13.11159 -12.90839 -12.68248 -12.41647 -12.25298 -11.83542 -11.69670 -11.62774 -11.43208 -11.27774 -11.08470 -10.97293 -10.90004 -10.54398 -10.20006 -9.19146 -9.18624 -8.99318 -8.82023 -8.29022 -8.07526 -6.73715 -6.56628 -4.24287 1.13607 1.27596 2.71281 2.74421 3.00426 3.04647 3.09673 3.57695 3.64875 3.72026 3.89059 4.37581 4.46477 4.59532 4.62103 4.67787 4.83908 4.88431 5.01320 5.04568 5.06917 5.16595 5.29524 5.30979 5.39488 5.46515 5.52635 5.56130 5.89142 5.90617 6.15299 6.21760 6.25712 6.38443 6.41797 6.60863 6.85544 6.93312 7.06861 7.21465 7.31236 7.84416 8.11767 8.24727 8.59901 8.79160 9.36265 9.65378 10.39324 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.002301 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.128026 B =12166.138199 C =12576.800515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.156 4.156 6 C 0.139 3.861 7 O -0.281 6.281 8 C 0.072 3.928 9 H 0.095 0.905 10 C -0.175 4.175 11 C 0.502 3.498 12 O -0.512 6.512 13 N -0.618 5.618 14 C -0.060 4.060 15 C -0.032 4.032 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.083 4.083 27 C -0.215 4.215 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.146 0.854 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.547 15.882 7.154 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.049 4.049 3 C -0.183 4.183 4 C -0.095 4.095 5 C -0.175 4.175 6 C 0.093 3.907 7 O -0.193 6.193 8 C 0.012 3.988 9 H 0.112 0.888 10 C -0.233 4.233 11 C 0.286 3.714 12 O -0.386 6.386 13 N -0.263 5.263 14 C -0.166 4.166 15 C -0.208 4.208 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.455 4.455 19 H 0.134 0.866 20 C -0.172 4.172 21 N -0.395 5.395 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.234 4.234 27 C -0.233 4.233 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.230 0.770 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.226 15.300 6.506 20.637 hybrid contribution -1.482 -0.450 0.127 1.554 sum -13.708 14.850 6.633 21.270 Atomic orbital electron populations 1.20823 0.91081 1.02842 1.02517 1.19696 0.95935 0.92519 0.96735 1.20913 0.94228 0.97405 1.05707 1.20940 0.94074 0.97188 0.97268 1.20486 1.00739 0.89651 1.06630 1.19103 0.90524 0.86112 0.94920 1.86245 1.34622 1.11320 1.87132 1.22161 0.93868 0.84213 0.98589 0.88780 1.22338 1.02700 1.02643 0.95609 1.19739 0.88455 0.82761 0.80475 1.90641 1.15714 1.80228 1.52059 1.42301 1.11432 1.11009 1.61509 1.17220 0.92264 0.89442 1.17639 1.24127 0.92948 0.98420 1.05288 1.78272 1.07536 0.99171 1.24099 1.44560 1.03893 1.08967 1.33497 1.19873 0.97874 0.85312 1.42479 0.86589 1.25654 0.94689 1.00596 0.96218 1.70215 0.99385 1.35939 1.34002 0.85824 0.78567 0.80349 0.79388 1.19578 1.20072 1.18805 1.21234 0.94118 0.93308 1.14738 1.21183 0.92977 0.99000 1.10154 0.90933 0.91467 0.91388 0.86113 0.85403 0.85020 0.90917 0.90187 0.90477 0.77022 0.80734 0.91417 0.83640 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.05 -0.45 5.88 -104.64 -0.62 -1.07 16 3 C -0.16 -1.47 9.70 -39.56 -0.38 -1.86 16 4 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 5 C -0.16 -1.84 9.99 -39.43 -0.39 -2.23 16 6 C 0.14 1.79 6.60 -39.22 -0.26 1.53 16 7 O -0.28 -4.28 9.34 -39.28 -0.37 -4.64 16 8 C 0.07 0.94 2.64 -27.88 -0.07 0.87 16 9 H 0.09 0.99 6.31 -51.92 -0.33 0.67 16 10 C -0.18 -1.78 9.13 37.16 0.34 -1.44 16 11 C 0.50 8.99 7.15 -10.98 -0.08 8.91 16 12 O -0.51 -11.63 13.66 -14.32 -0.20 -11.82 16 13 N -0.62 -10.77 5.43 -10.00 -0.05 -10.82 16 14 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 15 C -0.03 -0.86 10.85 -17.03 -0.18 -1.05 16 16 N -0.26 -7.62 10.40 30.80 0.32 -7.30 16 17 N -0.14 -3.89 3.74 -11.41 -0.04 -3.93 16 18 C -0.32 -8.52 10.25 -14.81 -0.15 -8.67 16 19 H 0.12 2.72 7.83 -52.49 -0.41 2.30 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -21.58 11.81 55.50 0.66 -20.92 16 22 Si 0.93 18.88 29.55 -169.99 -5.02 13.86 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 27 C -0.21 -2.27 7.89 -39.43 -0.31 -2.58 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 34 H 0.07 0.62 6.91 -51.93 -0.36 0.26 16 35 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.40 5.07 8.62 -40.82 -0.35 4.72 16 38 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 39 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.15 2.78 8.06 -52.48 -0.42 2.36 16 41 H 0.13 1.14 5.43 -52.49 -0.29 0.86 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -34.97 351.20 -7.40 -42.37 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.97 Total: 10.01 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.01 Total: -12.10 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.88 Total: -42.97 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.56 Total: -16.46 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.97 -7.40 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139793843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.704 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds