Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38279 * 119.97291 * 2 1 4 4 C 1.38243 * 120.11464 * 179.97438 * 3 2 1 5 5 C 1.38172 * 120.05216 * 0.02706 * 4 3 2 6 6 C 1.38706 * 119.94469 * 359.97438 * 5 4 3 7 7 O 1.35899 * 120.05441 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99956 * 185.35915 * 7 6 5 9 9 H 1.09008 * 109.47085 * 35.33023 * 8 7 6 10 10 C 1.52995 * 109.47529 * 275.32796 * 8 7 6 11 11 C 1.50707 * 109.47060 * 155.32553 * 8 7 6 12 12 O 1.21299 * 119.99615 * 5.00244 * 11 8 7 13 13 N 1.34777 * 119.99914 * 185.27821 * 11 8 7 14 14 C 1.40591 * 119.99758 * 179.72678 * 13 11 8 15 15 C 1.40650 * 126.08316 * 0.02562 * 14 13 11 16 16 N 1.30910 * 108.38590 * 180.02562 * 15 14 13 17 17 N 1.40068 * 108.40532 * 359.97438 * 16 15 14 18 18 C 1.37326 * 126.06875 * 180.02562 * 17 16 15 19 19 H 1.07990 * 120.00251 * 179.97438 * 18 17 16 20 20 C 1.38994 * 119.99583 * 359.97438 * 18 17 16 21 21 N 1.31289 * 120.00128 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99578 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46805 * 90.00106 * 22 20 18 24 24 H 1.48501 * 109.46848 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47112 * 329.99841 * 22 20 18 26 26 C 1.35681 * 126.07972 * 179.71225 * 14 13 11 27 27 C 1.38125 * 119.96864 * 180.30070 * 2 1 3 28 28 H 1.08995 * 109.46882 * 90.00066 * 1 2 3 29 29 H 1.09004 * 109.46792 * 210.00033 * 1 2 3 30 30 H 1.09001 * 109.46849 * 329.99450 * 1 2 3 31 31 H 1.08000 * 119.94326 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.97722 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.02765 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.46891 * 59.99772 * 10 8 7 35 35 H 1.09003 * 109.47410 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47303 * 300.00254 * 10 8 7 37 37 H 0.96999 * 120.00016 * 359.72601 * 13 11 8 38 38 H 1.07995 * 125.80693 * 359.97438 * 15 14 13 39 39 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 40 40 H 1.08003 * 126.24528 * 0.02562 * 26 14 13 41 41 H 1.08002 * 120.03078 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2753 0.0070 0.0005 6 6 3.5846 -1.1959 0.0005 7 8 4.2659 -2.3718 0.0010 8 6 3.4942 -3.5686 -0.1180 9 1 2.6438 -3.3888 -0.7759 10 6 2.9899 -3.9899 1.2637 11 6 4.3527 -4.6646 -0.6951 12 8 5.5336 -4.4697 -0.8920 13 7 3.8072 -5.8594 -0.9975 14 6 4.6069 -6.8799 -1.5412 15 6 5.9828 -6.7941 -1.8203 16 7 6.3754 -7.9397 -2.3176 17 7 5.2706 -8.7989 -2.3748 18 6 5.2752 -10.0921 -2.8366 19 1 4.3623 -10.6690 -2.8361 20 6 6.4550 -10.6586 -3.3049 21 7 7.5647 -9.9571 -3.3060 22 14 6.4613 -12.4181 -3.9324 23 1 6.1715 -12.4251 -5.3888 24 1 7.7948 -13.0251 -3.6901 25 1 5.4229 -13.2025 -3.2172 26 6 4.1900 -8.1246 -1.8844 27 6 2.1971 -1.1966 -0.0063 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6566 2.1324 0.0004 32 1 4.1177 2.1381 0.0010 33 1 5.3553 0.0101 0.0005 34 1 2.3689 -3.1971 1.6810 35 1 2.4009 -4.9026 1.1728 36 1 3.8401 -4.1697 1.9215 37 1 2.8628 -6.0151 -0.8400 38 1 6.6086 -5.9299 -1.6537 39 1 8.3880 -10.3524 -3.6331 40 1 3.1856 -8.5102 -1.7900 41 1 1.6570 -2.1319 -0.0116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139793843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = 14.829287 kcal Electronic energy + Delta-G solvation = -24913.434508 eV Core-core repulsion = 21180.928969 eV Total energy + Delta-G solvation = -3732.505539 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93822 -41.34789 -40.13926 -38.46368 -35.99412 -35.09704 -33.86916 -32.71446 -32.14026 -30.86894 -29.55629 -27.76278 -26.98820 -25.62845 -23.64232 -22.86334 -22.42999 -21.65640 -21.17521 -19.39900 -18.87032 -18.37154 -17.41984 -17.07320 -16.80762 -16.63654 -16.55403 -15.84775 -15.71863 -15.31970 -15.03377 -14.99328 -14.77857 -14.37740 -14.24014 -13.98328 -13.51534 -13.42707 -13.32265 -13.23480 -12.94126 -12.90355 -12.84754 -12.63308 -12.31065 -12.08827 -11.95898 -11.86100 -11.72526 -11.04016 -10.85245 -10.66836 -10.12111 -9.74245 -9.13201 -8.57049 -8.47480 -6.25520 0.38478 0.48172 1.16812 1.39395 1.45918 1.56077 1.59919 1.83670 2.13551 2.46208 2.57788 2.81342 2.89243 3.08871 3.56431 3.73495 3.85822 3.88811 3.98897 4.19983 4.38021 4.42821 4.44921 4.56066 4.60406 4.65830 4.75613 4.83607 4.89194 4.96297 4.99212 5.04963 5.10804 5.27659 5.31507 5.37123 5.39858 5.51819 5.67134 5.88504 5.95049 6.27481 6.41335 6.67251 6.72386 7.30104 7.45772 7.66002 8.51966 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.002301 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.128026 B =12166.138199 C =12576.800515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.183 4.183 6 C 0.111 3.889 7 O -0.317 6.317 8 C 0.082 3.918 9 H 0.127 0.873 10 C -0.169 4.169 11 C 0.498 3.502 12 O -0.567 6.567 13 N -0.604 5.604 14 C -0.045 4.045 15 C -0.063 4.063 16 N -0.311 5.311 17 N -0.167 5.167 18 C -0.352 4.352 19 H 0.144 0.856 20 C -0.009 4.009 21 N -0.826 5.826 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.242 1.242 26 C -0.075 4.075 27 C -0.217 4.217 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.424 0.576 38 H 0.162 0.838 39 H 0.276 0.724 40 H 0.194 0.806 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.903 15.950 7.669 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.095 4.095 5 C -0.202 4.202 6 C 0.066 3.934 7 O -0.230 6.230 8 C 0.022 3.978 9 H 0.144 0.856 10 C -0.226 4.226 11 C 0.284 3.716 12 O -0.445 6.445 13 N -0.251 5.251 14 C -0.151 4.151 15 C -0.238 4.238 16 N -0.143 5.143 17 N 0.064 4.936 18 C -0.483 4.483 19 H 0.162 0.838 20 C -0.220 4.220 21 N -0.454 5.454 22 Si 0.839 3.161 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.165 1.165 26 C -0.226 4.226 27 C -0.236 4.236 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.262 0.738 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.211 0.789 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.663 15.398 7.050 23.758 hybrid contribution -0.207 -0.248 0.021 0.324 sum -16.869 15.150 7.072 23.751 Atomic orbital electron populations 1.20891 0.88746 1.04123 1.03367 1.20122 0.97651 0.92074 0.95375 1.21318 0.94031 0.98643 1.04251 1.21235 0.94770 0.97152 0.96345 1.20669 1.00638 0.90675 1.08194 1.19365 0.91740 0.85328 0.96950 1.86188 1.36422 1.12497 1.87934 1.22183 0.92854 0.82156 1.00569 0.85581 1.22358 1.02431 1.04661 0.93161 1.20789 0.88336 0.83530 0.78929 1.90626 1.18575 1.81268 1.54025 1.42177 1.12270 1.09822 1.60837 1.17283 0.91288 0.90637 1.15910 1.24128 0.95101 0.97809 1.06774 1.78171 1.09811 1.00468 1.25864 1.44871 1.04365 1.09566 1.34793 1.20658 0.99368 0.85464 1.42847 0.83837 1.26929 0.93816 1.05588 0.95699 1.70408 1.00391 1.38568 1.36036 0.84576 0.78802 0.73872 0.78845 1.18894 1.20386 1.16475 1.22023 0.95153 0.92824 1.12555 1.21395 0.91903 1.00488 1.09796 0.90137 0.90443 0.89977 0.83451 0.83183 0.86190 0.88663 0.87457 0.92514 0.73830 0.82148 0.91426 0.78900 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.24 0.71 -0.31 16 2 C -0.05 -0.81 5.88 -19.88 -0.12 -0.93 16 3 C -0.16 -2.50 9.70 22.28 0.22 -2.28 16 4 C -0.08 -1.37 10.04 22.26 0.22 -1.15 16 5 C -0.18 -4.39 9.99 22.37 0.22 -4.17 16 6 C 0.11 2.82 6.60 22.51 0.15 2.97 16 7 O -0.32 -9.81 9.34 -73.42 -0.69 -10.50 16 8 C 0.08 2.04 2.64 29.85 0.08 2.12 16 9 H 0.13 2.30 6.31 -2.38 -0.02 2.28 16 10 C -0.17 -3.02 9.13 71.98 0.66 -2.37 16 11 C 0.50 17.84 7.15 87.66 0.63 18.47 16 12 O -0.57 -27.09 13.66 15.90 0.22 -26.88 16 13 N -0.60 -20.21 5.43 -303.92 -1.65 -21.86 16 14 C -0.05 -2.07 6.90 37.73 0.26 -1.81 16 15 C -0.06 -3.54 10.85 85.42 0.93 -2.61 16 16 N -0.31 -19.11 10.40 -56.47 -0.59 -19.70 16 17 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 18 C -0.35 -18.54 10.25 84.01 0.86 -17.68 16 19 H 0.14 6.45 7.83 -2.92 -0.02 6.43 16 20 C -0.01 -0.46 5.50 84.96 0.47 0.00 16 21 N -0.83 -48.29 11.81 21.66 0.26 -48.04 16 22 Si 1.02 38.54 29.55 68.60 2.03 40.57 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 25 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 26 C -0.08 -3.41 11.49 83.38 0.96 -2.45 16 27 C -0.22 -4.10 7.89 22.37 0.18 -3.92 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.56 8.09 -2.38 -0.02 0.54 16 30 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.09 1.31 6.91 -2.38 -0.02 1.30 16 35 H 0.11 1.31 7.94 -2.39 -0.02 1.29 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.42 9.40 8.62 -92.71 -0.80 8.60 16 38 H 0.16 9.31 5.92 -2.91 -0.02 9.30 16 39 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.19 6.64 8.06 -2.91 -0.02 6.61 16 41 H 0.15 2.07 5.43 -2.91 -0.02 2.06 16 Total: -1.00 -83.23 351.20 5.56 -77.67 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.27 Total: 34.85 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 6.42 Total: -16.12 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.69 Total: -99.59 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.47 Total: -37.37 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -83.23 5.56 -77.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139793843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.496 kcal (2) G-P(sol) polarization free energy of solvation -83.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds