Wall clock time and date at job start Tue Mar 31 2020 11:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38227 * 120.00282 * 2 1 4 4 C 1.38242 * 120.00205 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99903 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99624 * 359.95461 * 4 3 2 7 7 C 1.38238 * 120.00120 * 0.02577 * 6 4 3 8 8 C 1.50696 * 119.99620 * 179.97438 * 7 6 4 9 9 N 1.46497 * 109.47371 * 90.00227 * 8 7 6 10 10 C 1.39934 * 120.00150 * 179.97438 * 9 8 7 11 11 C 1.38713 * 120.07722 * 0.02562 * 10 9 8 12 12 C 1.38220 * 120.01474 * 179.97438 * 11 10 9 13 13 C 1.38523 * 120.17653 * 0.02562 * 12 11 10 14 14 F 1.35099 * 119.92155 * 180.02562 * 13 12 11 15 15 C 1.38356 * 120.16156 * 0.04309 * 13 12 11 16 16 C 1.38728 * 119.97966 * 359.93319 * 15 13 12 17 17 O 1.35794 * 120.08527 * 180.31966 * 16 15 13 18 18 C 1.34801 * 117.00313 * 354.40800 * 17 16 15 19 19 H 1.07999 * 119.99778 * 5.07674 * 18 17 16 20 20 C 1.38629 * 119.99953 * 185.06987 * 18 17 16 21 21 N 1.31578 * 120.00246 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47295 * 90.00156 * 22 20 18 24 24 H 1.48504 * 109.46766 * 210.00287 * 22 20 18 25 25 H 1.48495 * 109.47126 * 330.00108 * 22 20 18 26 26 C 1.38235 * 120.00038 * 0.24984 * 7 6 4 27 27 H 1.09004 * 109.47228 * 89.99475 * 1 2 3 28 28 H 1.08995 * 109.47594 * 210.00032 * 1 2 3 29 29 H 1.08999 * 109.47057 * 330.00369 * 1 2 3 30 30 H 1.08000 * 120.00458 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.46929 * 269.97251 * 5 4 3 32 32 H 1.08995 * 109.47699 * 29.97509 * 5 4 3 33 33 H 1.09008 * 109.46899 * 149.98068 * 5 4 3 34 34 H 1.08001 * 119.99603 * 180.02562 * 6 4 3 35 35 H 1.09001 * 109.47753 * 329.99555 * 8 7 6 36 36 H 1.09003 * 109.46874 * 209.99758 * 8 7 6 37 37 H 0.97001 * 120.00096 * 359.97438 * 9 8 7 38 38 H 1.07995 * 119.99180 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.90930 * 180.02562 * 12 11 10 40 40 H 1.07997 * 120.01533 * 180.02562 * 15 13 12 41 41 H 0.96998 * 120.00588 * 179.97438 * 21 20 18 42 42 H 1.07995 * 119.99819 * 179.72905 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1970 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3341 2.5021 -0.0011 6 6 4.2717 -0.0002 -0.0001 7 6 3.5804 -1.1973 0.0003 8 6 4.3339 -2.5024 0.0002 9 7 4.5786 -2.9252 1.3813 10 6 5.2661 -4.1169 1.6368 11 6 5.7171 -4.8988 0.5836 12 6 6.3966 -6.0754 0.8375 13 6 6.6287 -6.4777 2.1426 14 9 7.2938 -7.6284 2.3848 15 6 6.1809 -5.7041 3.1986 16 6 5.4987 -4.5217 2.9513 17 8 5.0638 -3.7575 3.9861 18 6 5.2240 -4.2592 5.2271 19 1 5.7538 -5.1895 5.3692 20 6 4.7086 -3.5809 6.3207 21 7 4.0628 -2.4477 6.1476 22 14 4.9312 -4.2757 8.0404 23 1 6.1927 -3.7547 8.6254 24 1 3.7849 -3.8670 8.8915 25 1 4.9927 -5.7578 7.9713 26 6 2.1981 -1.1972 -0.0049 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1324 0.0004 31 1 4.5157 2.8162 -1.0289 32 1 3.7451 3.2620 0.5123 33 1 5.2866 2.3719 0.5127 34 1 5.3517 -0.0002 -0.0001 35 1 5.2861 -2.3722 -0.5141 36 1 3.7446 -3.2621 -0.5133 37 1 4.2640 -2.3791 2.1187 38 1 5.5374 -4.5882 -0.4350 39 1 6.7473 -6.6827 0.0162 40 1 6.3635 -6.0198 4.2151 41 1 3.7019 -1.9732 6.9127 42 1 1.6581 -2.1325 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150764831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:29 Heat of formation + Delta-G solvation = -33.180221 kcal Electronic energy + Delta-G solvation = -25058.260260 eV Core-core repulsion = 21303.752911 eV Total energy + Delta-G solvation = -3754.507349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.03847 -39.71533 -39.06727 -36.62807 -35.03196 -33.52525 -32.34505 -32.04883 -29.24983 -28.30119 -27.24895 -26.68768 -25.37962 -25.20373 -22.01788 -21.10937 -20.72744 -20.34546 -18.16635 -17.57635 -16.38951 -16.13563 -15.79171 -15.74046 -15.13476 -14.82382 -14.41964 -14.17061 -14.15056 -13.85909 -13.78945 -13.44540 -13.27519 -13.17201 -13.14747 -12.85882 -12.60931 -12.56603 -12.09313 -11.97392 -11.94169 -11.57960 -11.33316 -11.27041 -11.00625 -10.87852 -10.79487 -10.54455 -10.39501 -9.57847 -9.24014 -8.84829 -8.65570 -8.50654 -7.73279 -6.47740 -6.43014 -4.02570 1.32756 1.41183 2.13208 2.24957 3.12658 3.14254 3.18812 3.62395 3.94686 4.30393 4.47806 4.71838 4.77279 4.78529 4.98689 5.09376 5.15633 5.28646 5.30470 5.30711 5.44439 5.51325 5.54906 5.57149 5.60051 5.62729 5.73730 5.81659 5.84391 5.85067 6.12448 6.14959 6.21463 6.43826 6.55336 6.58414 6.59817 6.69131 6.82427 7.03476 7.05310 7.11386 7.26029 7.62890 7.92961 8.04606 8.42879 8.99011 9.65304 10.70429 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004048 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.075666 B = 6915.559004 C = 8872.516076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.118 4.118 4 C -0.087 4.087 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.090 4.090 8 C 0.174 3.826 9 N -0.741 5.741 10 C 0.153 3.847 11 C -0.147 4.147 12 C -0.195 4.195 13 C 0.086 3.914 14 F -0.158 7.158 15 C -0.241 4.241 16 C 0.122 3.878 17 O -0.175 6.175 18 C -0.387 4.387 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.939 3.061 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.269 0.731 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 6.004 -12.995 14.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.087 4.087 5 C -0.170 4.170 6 C -0.123 4.123 7 C -0.090 4.090 8 C 0.049 3.951 9 N -0.375 5.375 10 C 0.052 3.948 11 C -0.171 4.171 12 C -0.215 4.215 13 C 0.065 3.935 14 F -0.137 7.137 15 C -0.263 4.263 16 C 0.066 3.934 17 O -0.080 6.080 18 C -0.463 4.463 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.497 5.497 22 Si 0.764 3.236 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.123 4.123 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.246 0.754 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.397 6.385 -13.000 14.877 hybrid contribution 0.168 -0.453 1.263 1.353 sum -3.230 5.932 -11.737 13.542 Atomic orbital electron populations 1.20776 0.91253 1.02931 1.02027 1.19863 0.96011 0.93047 0.99721 1.20893 0.93526 0.97437 1.01813 1.19864 0.93790 0.95261 0.99760 1.20775 1.00104 0.94065 1.02029 1.20950 0.99817 0.91356 1.00200 1.19865 0.93771 0.94752 1.00634 1.20027 0.97953 0.91837 0.85255 1.44362 1.63821 1.23432 1.05918 1.17107 0.98222 0.89102 0.90337 1.19924 1.04576 0.95930 0.96668 1.20285 1.07512 0.99467 0.94286 1.17229 0.98758 0.83862 0.93672 1.91376 1.78993 1.47869 1.95450 1.20786 1.08312 0.97891 0.99282 1.18598 0.96141 0.90912 0.87701 1.83898 1.70958 1.40023 1.13080 1.21288 1.36899 1.08333 0.79765 0.89111 1.25241 0.95883 0.95854 0.99407 1.70028 1.33812 1.14294 1.31599 0.85728 0.78245 0.79203 0.80409 1.19889 1.20293 1.19148 1.20954 0.93491 0.97695 1.00151 0.91381 0.91380 0.91644 0.86342 0.91383 0.91645 0.91396 0.85980 0.92206 0.92212 0.75360 0.86167 0.86559 0.84469 0.92078 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.00 0.36 -0.73 16 2 C -0.09 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.12 -1.41 9.36 -39.58 -0.37 -1.78 16 4 C -0.09 -1.06 5.88 -104.62 -0.62 -1.68 16 5 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 6 C -0.10 -1.40 9.36 -39.58 -0.37 -1.77 16 7 C -0.09 -1.25 5.25 -104.62 -0.55 -1.80 16 8 C 0.17 2.49 5.04 -5.20 -0.03 2.46 16 9 N -0.74 -13.71 5.72 -59.63 -0.34 -14.06 16 10 C 0.15 3.13 6.67 -83.52 -0.56 2.58 16 11 C -0.15 -2.61 9.31 -39.41 -0.37 -2.98 16 12 C -0.20 -3.55 10.02 -39.48 -0.40 -3.95 16 13 C 0.09 1.76 7.29 -39.43 -0.29 1.47 16 14 F -0.16 -3.15 17.26 2.25 0.04 -3.11 16 15 C -0.24 -5.47 9.14 -39.36 -0.36 -5.83 16 16 C 0.12 2.90 6.67 -38.93 -0.26 2.64 16 17 O -0.18 -4.80 9.00 -0.01 0.00 -4.80 16 18 C -0.39 -10.65 9.49 30.88 0.29 -10.35 16 19 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -24.65 13.67 55.48 0.76 -23.90 16 22 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.10 -1.40 9.36 -39.58 -0.37 -1.77 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 36 H 0.06 0.79 7.89 -51.93 -0.41 0.39 16 37 H 0.41 8.55 7.83 -40.82 -0.32 8.23 16 38 H 0.12 1.77 6.73 -52.49 -0.35 1.41 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -29.79 361.12 -8.76 -38.55 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.41 Total: 11.27 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -4.23 Total: -24.90 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.42 Total: -37.95 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: 0.00 Total: -4.80 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.79 -8.76 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150764831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.369 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds