Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38260 * 120.00236 * 2 1 4 4 C 1.38212 * 120.00019 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99961 * 359.85295 * 4 3 2 6 6 C 1.50703 * 119.99854 * 180.21275 * 5 4 3 7 7 C 1.38212 * 120.00069 * 0.39768 * 5 4 3 8 8 C 1.50704 * 120.00130 * 179.80949 * 7 5 4 9 9 N 1.46502 * 109.46739 * 79.72630 * 8 7 5 10 10 C 1.39927 * 119.99708 * 180.02562 * 9 8 7 11 11 C 1.38712 * 120.08304 * 359.97438 * 10 9 8 12 12 C 1.38213 * 120.02278 * 180.29573 * 11 10 9 13 13 C 1.38534 * 120.16903 * 359.45503 * 12 11 10 14 14 F 1.35106 * 119.91945 * 180.27122 * 13 12 11 15 15 C 1.38352 * 120.16055 * 0.54969 * 13 12 11 16 16 C 1.38722 * 119.98534 * 359.72256 * 15 13 12 17 17 O 1.35792 * 120.09190 * 180.02562 * 16 15 13 18 18 C 1.34806 * 116.99901 * 354.40355 * 17 16 15 19 19 H 1.08000 * 119.99927 * 5.06341 * 18 17 16 20 20 C 1.38624 * 119.99642 * 185.06116 * 18 17 16 21 21 N 1.31571 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99554 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47173 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46916 * 120.00020 * 22 20 18 25 25 H 1.48496 * 109.47273 * 240.00021 * 22 20 18 26 26 C 1.38215 * 120.00071 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47476 * 269.98374 * 1 2 3 28 28 H 1.09002 * 109.47483 * 29.98070 * 1 2 3 29 29 H 1.08996 * 109.47811 * 149.98474 * 1 2 3 30 30 H 1.08000 * 119.99669 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.99647 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.46927 * 270.18172 * 6 5 4 33 33 H 1.08996 * 109.47038 * 30.18592 * 6 5 4 34 34 H 1.08997 * 109.46827 * 150.19017 * 6 5 4 35 35 H 1.08997 * 109.46935 * 319.73295 * 8 7 5 36 36 H 1.08994 * 109.47263 * 199.72510 * 8 7 5 37 37 H 0.97001 * 120.00297 * 0.02562 * 9 8 7 38 38 H 1.08001 * 119.99042 * 0.02933 * 11 10 9 39 39 H 1.07994 * 119.91667 * 179.72466 * 12 11 10 40 40 H 1.08002 * 120.01045 * 179.74783 * 15 13 12 41 41 H 0.97000 * 120.00328 * 180.02562 * 21 20 18 42 42 H 1.08004 * 119.99938 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0041 6 6 5.7786 -0.0001 0.0096 7 6 3.5806 -1.1970 -0.0011 8 6 4.3340 -2.5022 -0.0015 9 7 4.7867 -2.8050 1.3585 10 6 5.5136 -3.9740 1.6099 11 6 5.8060 -4.8474 0.5727 12 6 6.5188 -6.0047 0.8234 13 6 6.9529 -6.2906 2.1076 14 9 7.6540 -7.4207 2.3460 15 6 6.6652 -5.4246 3.1475 16 6 5.9454 -4.2640 2.9043 17 8 5.6623 -3.4123 3.9233 18 6 6.0074 -3.8075 5.1650 19 1 6.5589 -4.7253 5.3059 20 6 5.6541 -3.0359 6.2611 21 7 4.9818 -1.9180 6.0896 22 14 6.1329 -3.5832 7.9818 23 1 6.8793 -4.8646 7.9039 24 1 6.9925 -2.5476 8.6095 25 1 4.9081 -3.7722 8.7999 26 6 2.1980 -1.1970 -0.0005 27 1 -0.3634 -0.0003 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3634 -0.8898 -0.5140 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 6.1457 0.0022 -1.0168 33 1 6.1401 0.8887 0.5267 34 1 6.1401 -0.8913 0.5226 35 1 5.1971 -2.4232 -0.6625 36 1 3.6792 -3.2996 -0.3525 37 1 4.5826 -2.1953 2.0848 38 1 5.4729 -4.6253 -0.4303 39 1 6.7417 -6.6857 0.0155 40 1 7.0013 -5.6520 4.1484 41 1 4.7349 -1.3779 6.8566 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150769094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = -45.517013 kcal Electronic energy + Delta-G solvation = -25395.058022 eV Core-core repulsion = 21640.015709 eV Total energy + Delta-G solvation = -3755.042312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.62909 -41.03693 -40.49165 -38.28870 -36.43251 -34.55267 -34.25734 -32.53732 -30.91296 -30.13004 -29.43701 -27.32037 -26.60134 -25.56373 -23.69450 -22.89508 -22.59376 -20.97203 -19.99286 -19.29079 -17.78939 -17.36553 -16.93387 -16.89101 -16.64878 -16.43255 -15.98479 -15.75904 -15.46640 -15.43816 -15.14376 -14.82290 -14.70373 -14.40402 -14.07311 -13.89859 -13.74985 -13.60710 -13.46808 -13.35918 -13.16321 -12.92903 -12.74630 -12.45477 -12.36955 -12.17898 -12.06588 -11.88207 -11.72421 -11.48385 -10.80386 -10.71024 -9.77800 -9.42438 -9.31203 -8.46352 -8.01716 -6.08743 0.33523 0.46227 0.49945 0.62931 1.34768 1.41034 1.51237 2.15950 2.52556 2.78436 3.01027 3.11706 3.35472 3.64861 3.72913 3.88112 4.00828 4.03121 4.12090 4.26757 4.33270 4.39827 4.49459 4.56671 4.63130 4.73091 4.77745 4.81350 4.83706 4.85404 4.91506 5.03215 5.12150 5.15520 5.20428 5.34180 5.38288 5.45170 5.47992 5.52228 5.67684 5.73537 5.96862 6.05356 6.12556 6.55585 6.79570 6.99437 7.76718 8.75541 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.004320 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.211493 B = 6479.897178 C = 8416.734185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.118 4.118 4 C -0.130 4.130 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.175 3.825 9 N -0.739 5.739 10 C 0.155 3.845 11 C -0.135 4.135 12 C -0.163 4.163 13 C 0.064 3.936 14 F -0.156 7.156 15 C -0.246 4.246 16 C 0.081 3.919 17 O -0.216 6.216 18 C -0.407 4.407 19 H 0.093 0.907 20 C -0.015 4.015 21 N -0.912 5.912 22 Si 1.010 2.990 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.111 4.111 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.395 0.605 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.271 0.729 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 3.511 -14.969 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.136 4.136 4 C -0.148 4.148 5 C -0.084 4.084 6 C -0.175 4.175 7 C -0.113 4.113 8 C 0.052 3.948 9 N -0.370 5.370 10 C 0.052 3.948 11 C -0.159 4.159 12 C -0.183 4.183 13 C 0.043 3.957 14 F -0.135 7.135 15 C -0.268 4.268 16 C 0.028 3.972 17 O -0.123 6.123 18 C -0.484 4.484 19 H 0.110 0.890 20 C -0.213 4.213 21 N -0.550 5.550 22 Si 0.830 3.170 23 H -0.182 1.182 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.129 4.129 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.228 0.772 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.138 0.862 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.098 3.856 -15.046 16.348 hybrid contribution 0.401 -0.185 1.651 1.709 sum -4.697 3.671 -13.395 14.662 Atomic orbital electron populations 1.20803 0.89440 1.03801 1.02652 1.20222 0.97522 0.92891 1.00007 1.21352 0.94178 0.98398 0.99685 1.21286 0.94744 0.97829 1.00955 1.20014 0.96651 0.92955 0.98801 1.20859 0.90805 1.02862 1.02959 1.19814 0.94056 0.94366 1.03089 1.20200 0.97624 0.93333 0.83670 1.44576 1.60675 1.22350 1.09436 1.17420 0.96807 0.90360 0.90190 1.20385 1.03516 0.93990 0.98011 1.20794 1.03156 0.99746 0.94556 1.17337 0.99363 0.84415 0.94611 1.91381 1.77291 1.49300 1.95516 1.20837 1.08452 0.97579 0.99900 1.19072 0.98005 0.91111 0.89008 1.83869 1.73808 1.40286 1.14312 1.21688 1.36642 1.09415 0.80608 0.88997 1.26349 0.96202 0.95486 1.03304 1.70159 1.38107 1.14082 1.32627 0.84642 0.78439 0.78731 0.75160 1.18177 1.19315 1.19374 1.21161 0.93317 0.98590 0.99861 0.91320 0.90022 0.90776 0.83943 0.84461 0.89439 0.91388 0.92439 0.90524 0.90816 0.77160 0.82031 0.82526 0.86155 0.91997 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.01 71.23 0.71 -1.16 16 2 C -0.11 -2.44 5.88 -19.87 -0.12 -2.56 16 3 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 4 C -0.13 -3.11 9.70 22.27 0.22 -2.89 16 5 C -0.08 -2.22 5.88 -19.87 -0.12 -2.34 16 6 C -0.12 -2.95 9.26 71.24 0.66 -2.29 16 7 C -0.11 -3.07 5.25 -19.87 -0.10 -3.17 16 8 C 0.17 4.70 4.17 85.63 0.36 5.06 16 9 N -0.74 -26.87 5.04 -342.57 -1.73 -28.60 16 10 C 0.15 6.15 6.67 38.27 0.26 6.40 16 11 C -0.14 -4.31 9.31 22.38 0.21 -4.10 16 12 C -0.16 -5.27 10.02 22.33 0.22 -5.04 16 13 C 0.06 2.52 7.29 22.37 0.16 2.68 16 14 F -0.16 -5.97 17.26 44.97 0.78 -5.19 16 15 C -0.25 -11.36 9.14 22.41 0.20 -11.16 16 16 C 0.08 3.93 6.67 22.69 0.15 4.08 16 17 O -0.22 -12.40 9.00 -22.96 -0.21 -12.61 16 18 C -0.41 -23.51 9.49 67.91 0.64 -22.86 16 19 H 0.09 5.06 5.21 -2.91 -0.02 5.04 16 20 C -0.02 -0.85 5.49 84.82 0.47 -0.39 16 21 N -0.91 -54.43 13.67 21.61 0.30 -54.13 16 22 Si 1.01 43.29 29.55 68.60 2.03 45.32 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.11 -2.83 9.32 22.27 0.21 -2.62 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.62 8.09 -2.39 -0.02 1.61 16 34 H 0.06 1.70 6.33 -2.39 -0.02 1.68 16 35 H 0.08 1.84 7.11 -2.39 -0.02 1.82 16 36 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 37 H 0.39 16.99 7.83 -92.71 -0.73 16.26 16 38 H 0.16 3.84 6.73 -2.91 -0.02 3.82 16 39 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 40 H 0.12 5.82 5.64 -2.91 -0.02 5.80 16 41 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.13 2.98 8.04 -2.91 -0.02 2.95 16 Total: -1.00 -67.44 356.84 5.85 -61.59 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: 0.33 Total: 38.38 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 4.35 Total: -44.76 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.43 Total: -82.73 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.21 Total: -12.61 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.78 Total: -5.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -67.44 5.85 -61.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150769094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.076 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds