Wall clock time and date at job start Tue Mar 31 2020 10:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48494 * 109.46962 * 240.00418 * 3 2 1 5 5 H 1.48499 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46653 * 120.00285 * 3 2 1 7 7 C 1.37873 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47460 * 180.02562 * 9 7 2 11 11 O 1.42902 * 109.47419 * 179.97438 * 10 9 7 12 12 C 1.35898 * 116.99730 * 179.97438 * 11 10 9 13 13 C 1.38755 * 120.05839 * 0.02562 * 12 11 10 14 14 C 1.38117 * 119.94118 * 179.97438 * 13 12 11 15 15 C 1.38289 * 120.05983 * 0.02562 * 14 13 12 16 16 C 1.38243 * 120.11231 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.97464 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47339 * 270.00239 * 17 16 15 19 19 C 1.39846 * 120.00231 * 179.97438 * 18 17 16 20 20 C 1.38835 * 120.07720 * 0.02562 * 19 18 17 21 21 C 1.38145 * 119.94628 * 179.97438 * 20 19 18 22 22 C 1.38280 * 120.11490 * 0.02562 * 21 20 19 23 23 C 1.38286 * 120.15772 * 0.02562 * 22 21 20 24 24 C 1.38284 * 120.05189 * 359.68524 * 23 22 21 25 25 F 1.35099 * 120.05881 * 180.32285 * 24 23 22 26 26 C 1.38166 * 120.05257 * 0.02562 * 16 15 14 27 27 H 0.96999 * 120.00141 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47602 * 59.99465 * 9 7 2 29 29 H 1.09007 * 109.47040 * 299.99426 * 9 7 2 30 30 H 1.09000 * 109.47211 * 59.99151 * 10 9 7 31 31 H 1.09007 * 109.46464 * 299.99704 * 10 9 7 32 32 H 1.07995 * 120.02466 * 359.95817 * 13 12 11 33 33 H 1.08001 * 119.97105 * 180.02562 * 14 13 12 34 34 H 1.08000 * 119.94758 * 180.02562 * 15 14 13 35 35 H 1.09004 * 109.47353 * 30.00599 * 17 16 15 36 36 H 1.09000 * 109.47209 * 150.00024 * 17 16 15 37 37 H 0.97000 * 120.00113 * 0.02562 * 18 17 16 38 38 H 1.08003 * 120.02351 * 0.02562 * 20 19 18 39 39 H 1.08008 * 119.94465 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.91968 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.97230 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.02702 * 180.26943 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 8 1.5310 -4.8997 -0.0020 12 6 2.2712 -6.0393 -0.0024 13 6 3.6569 -5.9680 -0.0017 14 6 4.4069 -7.1278 -0.0016 15 6 3.7780 -8.3594 -0.0026 16 6 2.3975 -8.4332 -0.0033 17 6 1.7154 -9.7769 -0.0038 18 7 1.4950 -10.2122 -1.3852 19 6 0.8732 -11.4384 -1.6412 20 6 0.4637 -12.2443 -0.5875 21 6 -0.1507 -13.4548 -0.8435 22 6 -0.3581 -13.8655 -2.1475 23 6 0.0489 -13.0669 -3.2005 24 6 0.6592 -11.8511 -2.9519 25 9 1.0511 -11.0678 -3.9806 26 6 1.6427 -7.2759 -0.0034 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5564 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 2.8715 -3.6047 0.8890 31 1 2.8727 -3.6039 -0.8910 32 1 4.1485 -5.0064 -0.0016 33 1 5.4855 -7.0729 -0.0007 34 1 4.3662 -9.2652 -0.0021 35 1 2.3442 -10.5039 0.5103 36 1 0.7571 -9.6982 0.5096 37 1 1.7810 -9.6502 -2.1223 38 1 0.6246 -11.9247 0.4315 39 1 -0.4690 -14.0819 -0.0238 40 1 -0.8384 -14.8127 -2.3441 41 1 -0.1141 -13.3908 -4.2178 42 1 0.5643 -7.3341 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157510432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:52 Heat of formation + Delta-G solvation = -58.990922 kcal Electronic energy + Delta-G solvation = -23990.490974 eV Core-core repulsion = 20234.864389 eV Total energy + Delta-G solvation = -3755.626585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.75116 -41.19708 -40.09901 -38.81794 -36.51257 -35.48026 -32.82985 -32.60559 -31.39701 -30.75585 -29.67311 -27.22008 -26.59117 -24.00678 -23.45546 -23.26848 -22.70360 -21.58331 -19.38482 -18.79015 -18.18918 -17.73634 -17.29330 -17.09294 -16.97187 -16.92599 -16.59159 -16.44230 -15.72944 -15.42694 -15.31748 -14.91532 -14.58464 -14.35670 -14.33433 -14.19993 -13.99112 -13.85529 -13.17163 -13.08115 -13.00067 -12.66565 -12.62548 -12.60817 -12.45442 -11.98725 -11.92499 -11.63327 -11.61369 -11.42591 -11.11988 -10.63718 -9.96914 -9.73763 -9.18613 -8.38955 -8.28641 -6.42797 0.17329 0.32161 0.44944 0.55789 1.39456 1.43484 1.51535 2.22166 2.33797 2.48047 2.82160 2.89208 3.05577 3.39962 3.61087 3.84564 3.90264 4.08019 4.15438 4.16812 4.23145 4.28054 4.31740 4.46348 4.48318 4.51119 4.56483 4.69873 4.75389 4.77604 5.01272 5.13900 5.20971 5.27723 5.35393 5.43284 5.43927 5.44712 5.51715 5.63493 5.64809 5.80853 5.87517 6.04409 6.27361 6.50780 6.59461 6.71756 7.27441 8.84212 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002035 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.631145 B =13756.778164 C =14214.489469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.085 3.915 11 O -0.342 6.342 12 C 0.105 3.895 13 C -0.214 4.214 14 C -0.078 4.078 15 C -0.138 4.138 16 C -0.069 4.069 17 C 0.176 3.824 18 N -0.744 5.744 19 C 0.178 3.822 20 C -0.182 4.182 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.113 4.113 24 C -0.018 4.018 25 F -0.160 7.160 26 C -0.152 4.152 27 H 0.267 0.733 28 H -0.003 1.003 29 H -0.002 1.002 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.143 0.857 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.453 -29.781 -0.563 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.090 0.910 9 C -0.009 4.009 10 C 0.011 3.989 11 O -0.257 6.257 12 C 0.059 3.941 13 C -0.232 4.232 14 C -0.096 4.096 15 C -0.157 4.157 16 C -0.069 4.069 17 C 0.053 3.947 18 N -0.373 5.373 19 C 0.074 3.926 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.176 4.176 23 C -0.132 4.132 24 C -0.041 4.041 25 F -0.140 7.140 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.015 0.985 29 H 0.017 0.983 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.126 -29.557 -0.377 30.001 hybrid contribution 0.260 1.934 -0.694 2.071 sum 5.386 -27.624 -1.072 28.164 Atomic orbital electron populations 1.70118 1.08065 1.28328 1.50479 1.26068 0.95852 1.03769 0.94130 0.85322 0.78104 0.77108 0.79447 1.18852 1.20784 1.18746 1.21363 0.93841 0.90974 1.52319 0.91039 1.18966 0.94569 0.91454 0.95950 1.22870 0.95386 0.80158 1.00535 1.86092 1.37526 1.13811 1.88245 1.19507 0.91156 0.86885 0.96509 1.21578 0.92504 1.01179 1.07986 1.21270 1.01059 0.91057 0.96216 1.21253 0.93463 0.98599 1.02376 1.19655 0.93959 0.93450 0.99848 1.20246 1.00131 0.91241 0.83100 1.44736 1.65829 1.18973 1.07745 1.18090 0.94567 0.87655 0.92312 1.20877 1.05469 0.96205 0.97966 1.21371 0.95359 0.94986 0.97778 1.21133 1.03422 1.01330 0.91717 1.21207 0.97972 0.92155 1.01894 1.17592 1.10157 0.93744 0.82620 1.91403 1.89996 1.74494 1.58074 1.20464 1.00496 0.89520 1.06618 0.92419 0.98487 0.98317 0.92003 0.92226 0.85318 0.82854 0.82982 0.88690 0.90643 0.76623 0.83608 0.82684 0.82974 0.83940 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.98 43.51 29.54 68.60 2.03 45.53 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.55 -30.97 9.11 25.60 0.23 -30.73 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.08 3.72 4.68 71.98 0.34 4.06 16 11 O -0.34 -14.59 10.14 -92.40 -0.94 -15.53 16 12 C 0.10 3.60 6.69 22.51 0.15 3.75 16 13 C -0.21 -6.24 9.04 22.36 0.20 -6.03 16 14 C -0.08 -1.71 10.04 22.25 0.22 -1.48 16 15 C -0.14 -2.67 9.70 22.28 0.22 -2.45 16 16 C -0.07 -1.48 5.25 -19.88 -0.10 -1.58 16 17 C 0.18 2.89 5.04 85.63 0.43 3.32 16 18 N -0.74 -14.44 5.73 -342.91 -1.96 -16.40 16 19 C 0.18 3.46 6.66 38.21 0.25 3.71 16 20 C -0.18 -2.68 9.31 22.39 0.21 -2.47 16 21 C -0.08 -0.88 10.04 22.26 0.22 -0.66 16 22 C -0.16 -1.91 10.04 22.29 0.22 -1.68 16 23 C -0.11 -1.86 10.02 22.29 0.22 -1.63 16 24 C -0.02 -0.37 7.31 22.48 0.16 -0.21 16 25 F -0.16 -4.02 16.64 44.97 0.75 -3.27 16 26 C -0.15 -4.38 9.64 22.37 0.22 -4.17 16 27 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 31 H 0.06 2.46 7.66 -2.38 -0.02 2.45 16 32 H 0.13 3.75 6.30 -2.91 -0.02 3.73 16 33 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.10 1.14 7.90 -2.38 -0.02 1.12 16 36 H 0.08 1.19 7.89 -2.39 -0.02 1.18 16 37 H 0.40 8.69 7.95 -92.71 -0.74 7.95 16 38 H 0.15 1.60 6.74 -2.91 -0.02 1.58 16 39 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -69.16 362.80 4.28 -64.87 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.30 Total: 17.52 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 3.82 Total: -36.09 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.68 Total: -73.05 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.94 Total: -15.53 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.75 Total: -3.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.16 4.28 -64.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157510432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.884 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds