Wall clock time and date at job start Tue Mar 31 2020 10:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48503 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47197 * 300.00315 * 3 2 1 6 6 H 1.48493 * 109.47086 * 60.00598 * 3 2 1 7 7 C 1.37879 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99810 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47081 * 184.78576 * 9 7 2 11 11 C 1.46897 * 111.00071 * 63.20739 * 10 9 7 12 12 C 1.50696 * 109.47453 * 66.04529 * 11 10 9 13 13 C 1.32578 * 120.00156 * 125.00247 * 12 11 10 14 14 C 1.47801 * 119.99990 * 180.02562 * 13 12 11 15 15 C 1.39549 * 120.11279 * 179.97438 * 14 13 12 16 16 C 1.37933 * 119.87839 * 179.97438 * 15 14 13 17 17 C 1.38569 * 120.11662 * 0.27819 * 16 15 14 18 18 F 1.35108 * 119.88239 * 179.70036 * 17 16 15 19 19 C 1.38577 * 120.23585 * 359.44647 * 17 16 15 20 20 C 1.37929 * 120.11454 * 0.55624 * 19 17 16 21 21 C 1.46893 * 111.00066 * 299.25134 * 10 9 7 22 22 C 1.50704 * 109.47027 * 287.62118 * 21 10 9 23 23 C 1.34516 * 125.79026 * 93.32806 * 22 21 10 24 24 C 1.41382 * 106.84273 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.83809 * 359.97438 * 24 23 22 26 26 O 1.34299 * 108.42218 * 359.73721 * 25 24 23 27 27 H 0.96999 * 119.99999 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47547 * 64.78126 * 9 7 2 29 29 H 1.09007 * 109.46884 * 304.78321 * 9 7 2 30 30 H 1.08999 * 109.46967 * 306.04648 * 11 10 9 31 31 H 1.09000 * 109.47416 * 186.04780 * 11 10 9 32 32 H 1.08003 * 120.00277 * 305.00289 * 12 11 10 33 33 H 1.07994 * 119.99905 * 359.97438 * 13 12 11 34 34 H 1.07990 * 120.06135 * 359.95932 * 15 14 13 35 35 H 1.07997 * 119.93996 * 180.02562 * 16 15 14 36 36 H 1.08000 * 119.94506 * 180.27619 * 19 17 16 37 37 H 1.07997 * 120.06047 * 179.74583 * 20 19 17 38 38 H 1.09002 * 109.47144 * 47.61923 * 21 10 9 39 39 H 1.08994 * 109.47507 * 167.62745 * 21 10 9 40 40 H 1.08007 * 126.57489 * 359.96298 * 23 22 21 41 41 H 1.08005 * 126.57771 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.78673 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2015 -3.6133 0.1144 11 6 2.9233 -3.5597 1.3926 12 6 1.9574 -3.7942 2.5253 13 6 2.1875 -4.7605 3.4034 14 6 1.2398 -4.9908 4.5140 15 6 1.4794 -6.0076 5.4393 16 6 0.5921 -6.2179 6.4742 17 6 -0.5385 -5.4255 6.5926 18 9 -1.4076 -5.6396 7.6046 19 6 -0.7782 -4.4108 5.6798 20 6 0.1026 -4.1920 4.6411 21 6 3.1367 -3.6264 -1.0182 22 6 2.4143 -4.0788 -2.2610 23 6 1.8317 -3.2751 -3.1689 24 6 1.2766 -4.1141 -4.1623 25 6 1.5536 -5.3802 -3.8024 26 8 2.2481 -5.3525 -2.6533 27 1 -0.4850 0.8400 0.0004 28 1 0.6897 -2.5947 -0.9301 29 1 0.5619 -2.5208 0.8438 30 1 3.3868 -2.5799 1.5073 31 1 3.6942 -4.3302 1.4072 32 1 1.0777 -3.1751 2.6218 33 1 3.0669 -5.3798 3.3068 34 1 2.3577 -6.6287 5.3452 35 1 0.7767 -7.0042 7.1911 36 1 -1.6585 -3.7931 5.7791 37 1 -0.0871 -3.4036 3.9278 38 1 3.5334 -2.6230 -1.1735 39 1 3.9565 -4.3122 -0.8047 40 1 1.7943 -2.1960 -3.1432 41 1 0.7342 -3.7988 -5.0415 42 1 1.2700 -6.2682 -4.3478 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159600755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:31 Heat of formation + Delta-G solvation = 1.780411 kcal Electronic energy + Delta-G solvation = -24864.215766 eV Core-core repulsion = 21111.224424 eV Total energy + Delta-G solvation = -3752.991342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.88984 -43.31434 -40.06470 -38.80861 -35.31233 -34.49049 -33.72405 -32.13782 -31.74514 -30.38785 -28.82062 -26.81392 -25.85345 -24.30824 -23.50608 -22.50364 -22.15969 -21.05587 -20.18908 -18.78008 -18.62243 -17.87242 -17.34438 -17.15821 -16.75876 -16.72562 -16.58417 -15.88530 -15.62809 -15.52432 -15.14957 -14.61081 -14.47346 -14.36495 -13.95624 -13.83218 -13.63935 -13.54138 -13.41042 -13.26283 -13.06123 -12.84290 -12.60898 -12.34649 -12.27460 -12.03983 -11.92920 -11.73427 -11.52295 -10.92941 -10.71718 -10.56102 -10.08955 -9.36153 -9.07090 -8.82584 -8.12477 -6.30503 -0.16324 0.29576 0.93128 1.35913 1.39114 1.48338 1.52745 1.83015 2.26359 2.38093 2.82124 3.13964 3.28529 3.50776 3.74709 3.83113 3.94839 4.03298 4.20038 4.26444 4.30337 4.32199 4.40004 4.48287 4.61515 4.72284 4.78144 4.92106 5.00787 5.04669 5.05549 5.16140 5.16599 5.22998 5.28271 5.36008 5.41014 5.41618 5.71749 5.77741 5.78323 5.90045 5.99213 6.03765 6.21839 6.39627 6.47699 6.89475 7.40270 8.90134 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010114 B = 0.003537 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.784121 B = 7914.564198 C = 9731.453135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.202 3.798 10 N -0.538 5.538 11 C 0.089 3.911 12 C -0.117 4.117 13 C -0.125 4.125 14 C -0.063 4.063 15 C -0.079 4.079 16 C -0.147 4.147 17 C 0.072 3.928 18 F -0.148 7.148 19 C -0.158 4.158 20 C -0.106 4.106 21 C 0.135 3.865 22 C -0.001 4.001 23 C -0.222 4.222 24 C -0.231 4.231 25 C -0.043 4.043 26 O -0.185 6.185 27 H 0.262 0.738 28 H 0.003 0.997 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.163 0.837 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -13.117 4.949 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.586 4.586 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.261 5.261 11 C -0.038 4.038 12 C -0.136 4.136 13 C -0.143 4.143 14 C -0.063 4.063 15 C -0.096 4.096 16 C -0.166 4.166 17 C 0.053 3.947 18 F -0.127 7.127 19 C -0.177 4.177 20 C -0.124 4.124 21 C 0.007 3.993 22 C -0.052 4.052 23 C -0.242 4.242 24 C -0.250 4.250 25 C -0.110 4.110 26 O -0.081 6.081 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.180 0.820 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.010 -13.701 5.142 15.468 hybrid contribution -0.295 2.578 -0.173 2.601 sum 4.715 -11.123 4.970 13.063 Atomic orbital electron populations 1.70076 1.07558 1.27485 1.51352 1.25679 0.95363 1.02362 0.94769 0.85667 0.79408 0.80146 0.77463 1.18641 1.20962 1.20848 1.21940 0.93425 0.92545 1.50654 0.91912 1.19412 0.91339 0.86218 0.95469 1.62475 1.17248 1.45390 1.01031 1.21082 0.94675 1.00795 0.87212 1.23259 0.98600 0.96951 0.94766 1.21666 0.99563 0.98790 0.94309 1.19351 0.94661 0.96224 0.96108 1.21427 0.99739 0.96366 0.92103 1.21360 0.93365 1.00961 1.00887 1.17984 0.90440 0.98566 0.87672 1.91467 1.68677 1.94381 1.58184 1.21186 1.01821 0.99022 0.95634 1.21330 0.94172 0.99528 0.97373 1.20420 0.93041 1.00243 0.85599 1.22425 1.03908 0.80795 0.98030 1.21729 1.04524 1.00500 0.97432 1.22087 1.06968 0.93318 1.02670 1.24740 0.98472 1.00580 0.87161 1.83977 1.59024 1.29088 1.35984 0.92890 0.97924 0.97219 0.93868 0.88616 0.89296 0.83503 0.81600 0.82064 0.84287 0.86083 0.91568 0.88196 0.85664 0.81972 0.74035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.86 13.29 21.45 0.28 -53.57 16 2 C 0.02 0.96 5.46 84.66 0.46 1.43 16 3 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.55 -28.43 7.33 25.60 0.19 -28.25 16 8 H 0.06 3.15 5.95 -2.91 -0.02 3.13 16 9 C 0.20 10.17 4.79 85.56 0.41 10.58 16 10 N -0.54 -21.87 4.64 -909.97 -4.23 -26.09 16 11 C 0.09 3.07 5.23 85.56 0.45 3.52 16 12 C -0.12 -3.95 8.61 24.53 0.21 -3.74 16 13 C -0.12 -3.31 9.52 23.65 0.23 -3.09 16 14 C -0.06 -1.64 5.87 -20.11 -0.12 -1.76 16 15 C -0.08 -1.57 9.78 22.51 0.22 -1.35 16 16 C -0.15 -2.93 10.01 22.28 0.22 -2.71 16 17 C 0.07 1.78 7.30 22.43 0.16 1.94 16 18 F -0.15 -3.72 17.26 44.97 0.78 -2.95 16 19 C -0.16 -4.19 10.01 22.28 0.22 -3.97 16 20 C -0.11 -3.07 9.40 22.51 0.21 -2.86 16 21 C 0.13 4.95 5.34 85.56 0.46 5.41 16 22 C 0.00 -0.04 6.32 24.83 0.16 0.11 16 23 C -0.22 -8.68 9.79 22.19 0.22 -8.46 16 24 C -0.23 -7.32 10.91 22.19 0.24 -7.08 16 25 C -0.04 -1.18 12.09 66.97 0.81 -0.37 16 26 O -0.18 -6.31 10.65 -2.44 -0.03 -6.34 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.00 0.15 6.69 -2.38 -0.02 0.13 16 29 H 0.01 0.54 6.52 -2.38 -0.02 0.52 16 30 H 0.04 1.64 6.61 -2.39 -0.02 1.63 16 31 H 0.10 2.61 7.53 -2.39 -0.02 2.59 16 32 H 0.09 3.52 4.86 -2.91 -0.01 3.51 16 33 H 0.15 2.98 7.87 -2.91 -0.02 2.96 16 34 H 0.17 2.16 8.06 -2.92 -0.02 2.14 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.12 3.89 6.16 -2.91 -0.02 3.87 16 38 H 0.07 2.62 6.13 -2.39 -0.01 2.61 16 39 H 0.10 3.01 7.80 -2.39 -0.02 2.99 16 40 H 0.13 5.41 8.06 -2.91 -0.02 5.39 16 41 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -65.06 357.24 4.62 -60.43 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.04 Total: 24.50 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 4.75 Total: -40.63 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -3.94 Total: -79.67 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.03 Total: -6.34 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.06 4.62 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159600755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.215 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds