Wall clock time and date at job start Tue Mar 31 2020 11:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38026 * 120.00624 * 2 1 4 4 C 1.38205 * 120.21957 * 180.02562 * 3 2 1 5 5 C 1.38985 * 120.22609 * 0.02562 * 4 3 2 6 6 N 1.39969 * 120.00151 * 179.97438 * 5 4 3 7 7 C 1.34783 * 120.00245 * 146.86503 * 6 5 4 8 8 O 1.21589 * 119.99705 * 354.79544 * 7 6 5 9 9 N 1.34768 * 120.00062 * 174.79683 * 7 6 5 10 10 C 1.46501 * 120.00233 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46685 * 325.00056 * 10 9 7 12 12 C 1.52997 * 109.47018 * 84.99676 * 10 9 7 13 13 C 1.50697 * 109.47477 * 205.00087 * 10 9 7 14 14 H 1.08000 * 120.00130 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99953 * 180.27174 * 13 10 9 16 16 N 1.31514 * 120.00366 * 359.72982 * 15 13 10 17 17 Si 1.86804 * 119.99979 * 179.72278 * 15 13 10 18 18 H 1.48505 * 109.46925 * 89.99953 * 17 15 13 19 19 H 1.48500 * 109.47350 * 210.00322 * 17 15 13 20 20 H 1.48500 * 109.46950 * 330.00486 * 17 15 13 21 21 C 1.38591 * 120.00260 * 0.24627 * 5 4 3 22 22 C 1.39488 * 119.77558 * 359.46512 * 21 5 4 23 23 C 1.47844 * 120.10614 * 180.24380 * 22 21 5 24 24 N 1.31219 * 125.72300 * 186.39798 * 23 22 21 25 25 C 1.34160 * 108.64333 * 179.83911 * 24 23 22 26 26 C 1.34547 * 107.83736 * 0.42301 * 25 24 23 27 27 O 1.34422 * 125.72567 * 6.70501 * 23 22 21 28 28 H 1.08998 * 109.46939 * 96.34878 * 1 2 3 29 29 H 1.08999 * 109.47312 * 216.35636 * 1 2 3 30 30 H 1.09006 * 109.47161 * 336.35445 * 1 2 3 31 31 H 1.07997 * 119.88506 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.88769 * 180.02562 * 4 3 2 33 33 H 0.96997 * 119.99778 * 326.86334 * 6 5 4 34 34 H 0.97007 * 120.00439 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47538 * 300.00038 * 12 10 9 36 36 H 1.09005 * 109.47081 * 60.00623 * 12 10 9 37 37 H 1.08998 * 109.46987 * 180.02562 * 12 10 9 38 38 H 0.96999 * 120.00202 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.10831 * 179.70602 * 21 5 4 40 40 H 1.07998 * 126.07908 * 180.13519 * 25 24 23 41 41 H 1.08006 * 126.35849 * 179.77450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1953 0.0000 4 6 3.5793 1.2004 -0.0005 5 6 4.2834 0.0021 -0.0016 6 7 5.6831 0.0128 -0.0027 7 6 6.3650 -0.9597 0.6344 8 8 5.7676 -1.7923 1.2888 9 7 7.7089 -1.0092 0.5460 10 6 8.4501 -2.0659 1.2389 11 1 7.9545 -2.2993 2.1813 12 6 8.4927 -3.3185 0.3613 13 6 9.8557 -1.5967 1.5131 14 1 10.1660 -0.6101 1.2020 15 6 10.7473 -2.4291 2.1558 16 7 10.3697 -3.6307 2.5341 17 14 12.4919 -1.8503 2.4888 18 1 12.5466 -1.1796 3.8127 19 1 13.4097 -3.0177 2.4870 20 1 12.9062 -0.8933 1.4316 21 6 3.5998 -1.2034 -0.0073 22 6 2.2049 -1.2087 -0.0007 23 6 1.4682 -2.4906 -0.0012 24 7 0.1680 -2.6269 -0.1142 25 6 -0.1310 -3.9343 -0.0765 26 6 1.0193 -4.6160 0.0729 27 8 2.0174 -3.7115 0.1197 28 1 -0.3633 -0.1136 -1.0214 29 1 -0.3634 -0.8276 0.6092 30 1 -0.3634 0.9414 0.4122 31 1 1.6555 2.1295 -0.0004 32 1 4.1140 2.1388 -0.0001 33 1 6.1623 0.7201 -0.4619 34 1 8.1855 -0.3447 0.0241 35 1 7.4761 -3.6580 0.1630 36 1 8.9883 -3.0852 -0.5811 37 1 9.0438 -4.1048 0.8770 38 1 10.9971 -4.2165 2.9859 39 1 4.1452 -2.1355 -0.0130 40 1 -1.1196 -4.3629 -0.1483 41 1 1.1235 -5.6888 0.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163337585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:00 Heat of formation + Delta-G solvation = 27.325185 kcal Electronic energy + Delta-G solvation = -25389.632628 eV Core-core repulsion = 21657.668952 eV Total energy + Delta-G solvation = -3731.963676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.29319 -40.28674 -38.66584 -35.53314 -34.80460 -34.34939 -32.55985 -32.13717 -31.25588 -29.10281 -28.77705 -26.18984 -25.27063 -23.96196 -22.75530 -22.14253 -21.42419 -20.49266 -19.85256 -18.34121 -18.06638 -16.79614 -16.61643 -16.03343 -15.55010 -15.44689 -15.18366 -14.73686 -14.46299 -14.25066 -13.75435 -13.66654 -13.51317 -13.30293 -13.19372 -12.48494 -12.41908 -12.16332 -11.75679 -11.63065 -11.44437 -11.33828 -11.11272 -11.02635 -10.79368 -10.36283 -10.30221 -10.26061 -10.15384 -9.60969 -9.46368 -9.08551 -8.58527 -8.36764 -8.09364 -7.71230 -6.15217 -4.24616 0.64110 1.39258 1.79751 2.65707 2.70446 3.10720 3.22892 3.29827 3.31738 3.60162 3.89102 4.00647 4.30061 4.76155 4.86893 4.90539 4.94143 5.02373 5.08671 5.17566 5.34987 5.44600 5.60775 5.73333 5.80104 5.84549 5.92887 6.03383 6.24974 6.26407 6.35770 6.56189 6.66996 6.77152 6.94552 7.07196 7.09352 7.19978 7.41721 7.59126 7.64059 7.79702 7.95983 8.12325 8.68931 8.80819 9.18869 9.43647 10.90839 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.003003 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.146243 B = 9322.144668 C =10544.937358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.105 4.105 4 C -0.129 4.129 5 C 0.175 3.825 6 N -0.696 5.696 7 C 0.691 3.309 8 O -0.580 6.580 9 N -0.717 5.717 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.086 4.086 22 C -0.012 4.012 23 C 0.245 3.755 24 N -0.473 5.473 25 C -0.048 4.048 26 C -0.074 4.074 27 O -0.188 6.188 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.404 0.596 34 H 0.387 0.613 35 H 0.015 0.985 36 H 0.026 0.974 37 H 0.091 0.909 38 H 0.265 0.735 39 H 0.147 0.853 40 H 0.185 0.815 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 5.980 -7.837 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.065 4.065 3 C -0.123 4.123 4 C -0.151 4.151 5 C 0.079 3.921 6 N -0.344 5.344 7 C 0.391 3.609 8 O -0.457 6.457 9 N -0.368 5.368 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.108 4.108 22 C -0.014 4.014 23 C 0.042 3.958 24 N -0.203 5.203 25 C -0.188 4.188 26 C -0.145 4.145 27 O -0.074 6.074 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.239 0.761 34 H 0.219 0.781 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.165 0.835 40 H 0.202 0.798 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -18.503 5.433 -7.165 20.572 hybrid contribution 1.941 0.075 -0.162 1.949 sum -16.562 5.509 -7.326 18.929 Atomic orbital electron populations 1.20986 0.89979 1.02779 1.03175 1.19790 0.96766 0.90881 0.99033 1.20674 0.93129 0.97182 1.01345 1.21041 0.94394 0.96681 1.02994 1.17267 0.82509 0.93147 0.99198 1.42858 1.03974 1.30122 1.57438 1.16191 0.83033 0.81534 0.80132 1.90909 1.68194 1.41319 1.45280 1.45874 1.03254 1.33736 1.53972 1.18695 0.89926 0.82315 0.91235 0.93243 1.22104 0.98058 1.01455 0.99061 1.21202 0.95532 1.01188 1.39400 0.92052 1.24882 0.98954 0.94736 0.95115 1.69902 1.35602 1.07528 1.38962 0.86429 0.83590 0.78250 0.78697 1.20540 1.21045 1.19858 1.21301 0.92073 0.99218 0.98205 1.16982 0.91411 0.86205 1.06806 1.23856 0.87117 0.84875 0.99958 1.70818 1.11618 1.18607 1.19229 1.23416 1.00188 0.89123 1.06032 1.25176 0.85968 0.96113 1.07201 1.84616 1.38028 1.16290 1.68451 0.91093 0.89012 0.92503 0.84988 0.85238 0.76073 0.78110 0.96603 0.95483 0.89048 0.92516 0.83487 0.79830 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 8.82 36.01 0.32 -0.90 16 2 C -0.06 -0.79 5.91 -104.20 -0.62 -1.40 16 3 C -0.10 -1.13 9.65 -39.67 -0.38 -1.52 16 4 C -0.13 -1.50 9.95 -39.32 -0.39 -1.89 16 5 C 0.18 2.60 6.27 -83.73 -0.53 2.07 16 6 N -0.70 -10.42 5.35 -14.26 -0.08 -10.50 16 7 C 0.69 13.85 8.27 -86.92 -0.72 13.13 16 8 O -0.58 -14.00 13.69 5.29 0.07 -13.93 16 9 N -0.72 -14.65 5.07 -59.81 -0.30 -14.96 16 10 C 0.28 7.07 2.56 -69.08 -0.18 6.89 16 11 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 12 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 13 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.71 11.31 55.43 0.63 -24.08 16 17 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.09 -1.43 8.32 -38.99 -0.32 -1.75 16 22 C -0.01 -0.18 5.87 -105.00 -0.62 -0.80 16 23 C 0.24 3.73 7.74 -13.88 -0.11 3.62 16 24 N -0.47 -6.44 7.94 -11.72 -0.09 -6.53 16 25 C -0.05 -0.52 11.87 -17.84 -0.21 -0.73 16 26 C -0.07 -0.81 12.17 29.43 0.36 -0.46 16 27 O -0.19 -2.90 10.54 4.09 0.04 -2.85 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.12 5.81 -51.93 -0.30 0.82 16 30 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.40 4.49 8.83 -40.82 -0.36 4.13 16 34 H 0.39 6.66 8.56 -40.82 -0.35 6.31 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.15 2.85 6.27 -52.49 -0.33 2.52 16 40 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.22 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -32.98 349.32 -7.90 -40.88 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.97 Total: 10.95 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.45 Total: 0.33 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.15 Total: -56.06 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: 0.12 Total: -16.79 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.98 -7.90 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163337585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.210 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds