Wall clock time and date at job start Tue Mar 31 2020 11:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38026 * 120.00624 * 2 1 4 4 C 1.38205 * 120.21957 * 180.02562 * 3 2 1 5 5 C 1.38985 * 120.22609 * 0.02562 * 4 3 2 6 6 N 1.39969 * 120.00151 * 179.97438 * 5 4 3 7 7 C 1.34783 * 120.00245 * 146.86503 * 6 5 4 8 8 O 1.21589 * 119.99705 * 354.79544 * 7 6 5 9 9 N 1.34768 * 120.00062 * 174.79683 * 7 6 5 10 10 C 1.46501 * 120.00233 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46685 * 325.00056 * 10 9 7 12 12 C 1.52997 * 109.47018 * 84.99676 * 10 9 7 13 13 C 1.50697 * 109.47477 * 205.00087 * 10 9 7 14 14 H 1.08000 * 120.00130 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99953 * 180.27174 * 13 10 9 16 16 N 1.31514 * 120.00366 * 359.72982 * 15 13 10 17 17 Si 1.86804 * 119.99979 * 179.72278 * 15 13 10 18 18 H 1.48505 * 109.46925 * 89.99953 * 17 15 13 19 19 H 1.48500 * 109.47350 * 210.00322 * 17 15 13 20 20 H 1.48500 * 109.46950 * 330.00486 * 17 15 13 21 21 C 1.38591 * 120.00260 * 0.24627 * 5 4 3 22 22 C 1.39488 * 119.77558 * 359.46512 * 21 5 4 23 23 C 1.47844 * 120.10614 * 180.24380 * 22 21 5 24 24 N 1.31219 * 125.72300 * 186.39798 * 23 22 21 25 25 C 1.34160 * 108.64333 * 179.83911 * 24 23 22 26 26 C 1.34547 * 107.83736 * 0.42301 * 25 24 23 27 27 O 1.34422 * 125.72567 * 6.70501 * 23 22 21 28 28 H 1.08998 * 109.46939 * 96.34878 * 1 2 3 29 29 H 1.08999 * 109.47312 * 216.35636 * 1 2 3 30 30 H 1.09006 * 109.47161 * 336.35445 * 1 2 3 31 31 H 1.07997 * 119.88506 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.88769 * 180.02562 * 4 3 2 33 33 H 0.96997 * 119.99778 * 326.86334 * 6 5 4 34 34 H 0.97007 * 120.00439 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47538 * 300.00038 * 12 10 9 36 36 H 1.09005 * 109.47081 * 60.00623 * 12 10 9 37 37 H 1.08998 * 109.46987 * 180.02562 * 12 10 9 38 38 H 0.96999 * 120.00202 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.10831 * 179.70602 * 21 5 4 40 40 H 1.07998 * 126.07908 * 180.13519 * 25 24 23 41 41 H 1.08006 * 126.35849 * 179.77450 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1953 0.0000 4 6 3.5793 1.2004 -0.0005 5 6 4.2834 0.0021 -0.0016 6 7 5.6831 0.0128 -0.0027 7 6 6.3650 -0.9597 0.6344 8 8 5.7676 -1.7923 1.2888 9 7 7.7089 -1.0092 0.5460 10 6 8.4501 -2.0659 1.2389 11 1 7.9545 -2.2993 2.1813 12 6 8.4927 -3.3185 0.3613 13 6 9.8557 -1.5967 1.5131 14 1 10.1660 -0.6101 1.2020 15 6 10.7473 -2.4291 2.1558 16 7 10.3697 -3.6307 2.5341 17 14 12.4919 -1.8503 2.4888 18 1 12.5466 -1.1796 3.8127 19 1 13.4097 -3.0177 2.4870 20 1 12.9062 -0.8933 1.4316 21 6 3.5998 -1.2034 -0.0073 22 6 2.2049 -1.2087 -0.0007 23 6 1.4682 -2.4906 -0.0012 24 7 0.1680 -2.6269 -0.1142 25 6 -0.1310 -3.9343 -0.0765 26 6 1.0193 -4.6160 0.0729 27 8 2.0174 -3.7115 0.1197 28 1 -0.3633 -0.1136 -1.0214 29 1 -0.3634 -0.8276 0.6092 30 1 -0.3634 0.9414 0.4122 31 1 1.6555 2.1295 -0.0004 32 1 4.1140 2.1388 -0.0001 33 1 6.1623 0.7201 -0.4619 34 1 8.1855 -0.3447 0.0241 35 1 7.4761 -3.6580 0.1630 36 1 8.9883 -3.0852 -0.5811 37 1 9.0438 -4.1048 0.8770 38 1 10.9971 -4.2165 2.9859 39 1 4.1452 -2.1355 -0.0130 40 1 -1.1196 -4.3629 -0.1483 41 1 1.1235 -5.6888 0.1419 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163337585.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:59 Heat of formation + Delta-G solvation = 3.762717 kcal Electronic energy + Delta-G solvation = -25390.654373 eV Core-core repulsion = 21657.668952 eV Total energy + Delta-G solvation = -3732.985421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.29691 -41.64263 -39.94395 -37.09659 -36.17732 -35.65190 -34.40919 -33.14899 -32.49096 -30.57124 -30.05670 -27.41245 -27.20238 -25.02004 -23.79769 -23.54236 -22.59291 -21.80949 -21.46267 -19.86070 -19.29214 -18.05181 -17.73916 -17.65562 -16.93343 -16.76231 -16.42233 -16.16996 -15.73868 -15.66413 -15.16723 -14.81369 -14.64565 -14.48916 -14.38226 -14.09049 -13.77623 -13.35291 -13.22033 -12.95687 -12.89856 -12.76476 -12.60758 -12.47959 -12.32397 -12.27989 -12.12705 -11.45709 -11.27897 -11.13085 -11.08990 -10.61788 -10.58869 -9.86371 -9.37712 -8.88156 -8.18359 -6.35997 -0.37811 0.31763 0.84261 1.45217 1.46165 1.56636 1.69069 1.72457 1.79108 2.15842 2.41678 2.80423 2.94901 3.12498 3.45024 3.87282 3.98226 4.05998 4.07521 4.20213 4.38900 4.46708 4.64573 4.72811 4.86188 4.86408 4.90601 4.94505 4.99943 5.07234 5.12128 5.21805 5.30061 5.38806 5.39615 5.54548 5.58536 5.64242 5.68421 5.82549 5.99475 6.07426 6.24835 6.64832 6.71866 7.21542 7.33005 7.65303 8.88346 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.003003 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.146243 B = 9322.144668 C =10544.937358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.063 4.063 3 C -0.092 4.092 4 C -0.112 4.112 5 C 0.150 3.850 6 N -0.673 5.673 7 C 0.690 3.310 8 O -0.627 6.627 9 N -0.712 5.712 10 C 0.289 3.711 11 H -0.002 1.002 12 C -0.134 4.134 13 C -0.546 4.546 14 H 0.077 0.923 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.975 3.025 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.258 1.258 21 C -0.115 4.115 22 C -0.031 4.031 23 C 0.210 3.790 24 N -0.472 5.472 25 C -0.052 4.052 26 C -0.076 4.076 27 O -0.222 6.222 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.425 0.575 34 H 0.405 0.595 35 H 0.007 0.993 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.266 0.734 39 H 0.104 0.896 40 H 0.223 0.777 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 8.842 -8.771 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.066 4.066 3 C -0.110 4.110 4 C -0.133 4.133 5 C 0.055 3.945 6 N -0.323 5.323 7 C 0.391 3.609 8 O -0.507 6.507 9 N -0.365 5.365 10 C 0.185 3.815 11 H 0.016 0.984 12 C -0.193 4.193 13 C -0.584 4.584 14 H 0.095 0.905 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.182 1.182 21 C -0.137 4.137 22 C -0.033 4.033 23 C 0.008 3.992 24 N -0.203 5.203 25 C -0.191 4.191 26 C -0.146 4.146 27 O -0.108 6.108 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.194 0.806 32 H 0.186 0.814 33 H 0.264 0.736 34 H 0.240 0.760 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.240 0.760 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -19.382 8.365 -8.155 22.631 hybrid contribution 2.006 -0.867 0.118 2.188 sum -17.377 7.498 -8.037 20.561 Atomic orbital electron populations 1.20966 0.88490 1.03646 1.03257 1.20182 0.97923 0.90569 0.97898 1.21195 0.92914 0.98053 0.98813 1.21418 0.94833 0.96507 1.00569 1.17527 0.82042 0.93935 1.00997 1.42439 1.04257 1.29167 1.56472 1.16304 0.82747 0.81915 0.79982 1.90890 1.69051 1.43441 1.47355 1.45430 1.03530 1.33398 1.54106 1.18247 0.89877 0.83741 0.89610 0.98434 1.21923 0.97295 1.00811 0.99272 1.21534 0.95673 1.01843 1.39385 0.90527 1.25823 1.03325 0.94726 0.94776 1.70060 1.37082 1.08835 1.39684 0.85301 0.78149 0.77864 0.78744 1.20383 1.21034 1.18185 1.21061 0.93011 0.98470 1.01178 1.17235 0.90985 0.87532 1.07545 1.24128 0.87806 0.85094 1.02153 1.70817 1.10689 1.20064 1.18714 1.24089 1.01758 0.88156 1.05138 1.26068 0.85374 0.97304 1.05805 1.84613 1.39987 1.17282 1.68957 0.90692 0.90668 0.89612 0.80575 0.81417 0.73584 0.75955 0.97341 0.93983 0.91341 0.92521 0.87760 0.76023 0.73157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 8.82 71.24 0.63 -1.45 16 2 C -0.06 -1.51 5.91 -19.59 -0.12 -1.63 16 3 C -0.09 -1.66 9.65 22.21 0.21 -1.44 16 4 C -0.11 -2.26 9.95 22.44 0.22 -2.04 16 5 C 0.15 4.45 6.27 38.10 0.24 4.68 16 6 N -0.67 -20.08 5.35 -317.27 -1.70 -21.78 16 7 C 0.69 28.74 8.27 179.06 1.48 30.22 16 8 O -0.63 -32.51 13.69 -4.00 -0.05 -32.57 16 9 N -0.71 -29.67 5.07 -461.42 -2.34 -32.01 16 10 C 0.29 15.16 2.56 44.24 0.11 15.27 16 11 H 0.00 -0.14 7.58 -2.38 -0.02 -0.16 16 12 C -0.13 -6.94 9.26 71.98 0.67 -6.27 16 13 C -0.55 -28.74 8.73 25.60 0.22 -28.52 16 14 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 15 C 0.01 0.73 5.30 84.65 0.45 1.17 16 16 N -0.92 -52.91 11.31 21.45 0.24 -52.66 16 17 Si 0.98 41.70 29.54 68.60 2.03 43.72 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.11 -4.09 8.32 22.66 0.19 -3.90 16 22 C -0.03 -0.98 5.87 -20.11 -0.12 -1.10 16 23 C 0.21 6.75 7.74 87.33 0.68 7.43 16 24 N -0.47 -12.90 7.94 -305.07 -2.42 -15.32 16 25 C -0.05 -1.09 11.87 83.49 0.99 -0.10 16 26 C -0.08 -1.70 12.17 66.97 0.82 -0.88 16 27 O -0.22 -7.36 10.54 -8.27 -0.09 -7.45 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.75 5.81 -2.39 -0.01 1.74 16 30 H 0.09 1.15 8.04 -2.38 -0.02 1.13 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.43 8.73 8.83 -92.71 -0.82 7.91 16 34 H 0.41 13.67 8.56 -92.70 -0.79 12.87 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 36 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 3.86 6.06 -2.39 -0.01 3.85 16 38 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.10 4.56 6.27 -2.91 -0.02 4.54 16 40 H 0.22 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.25 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -78.05 349.32 1.82 -76.23 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.52 Total: 30.40 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.67 Total: 11.44 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -6.22 Total: -121.78 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.14 Total: -40.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -78.05 1.82 -76.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163337585.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.989 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds