Wall clock time and date at job start Tue Mar 31 2020 11:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38025 * 120.00029 * 2 1 4 4 C 1.38212 * 120.21843 * 179.74792 * 3 2 1 5 5 C 1.38988 * 120.21932 * 0.55331 * 4 3 2 6 6 N 1.39973 * 119.99559 * 179.72565 * 5 4 3 7 7 C 1.34780 * 120.00026 * 144.49402 * 6 5 4 8 8 O 1.21586 * 119.99669 * 4.81354 * 7 6 5 9 9 N 1.34774 * 120.00034 * 184.82371 * 7 6 5 10 10 C 1.46504 * 120.00172 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46883 * 34.99491 * 10 9 7 12 12 C 1.52994 * 109.46889 * 274.99641 * 10 9 7 13 13 C 1.50700 * 109.46981 * 154.99708 * 10 9 7 14 14 H 1.07990 * 120.00196 * 31.93598 * 13 10 9 15 15 C 1.37875 * 119.99474 * 211.93783 * 13 10 9 16 16 N 1.31516 * 119.99822 * 177.66286 * 15 13 10 17 17 Si 1.86797 * 120.00363 * 357.65803 * 15 13 10 18 18 H 1.48505 * 109.47096 * 85.59272 * 17 15 13 19 19 H 1.48506 * 109.47227 * 205.59053 * 17 15 13 20 20 H 1.48498 * 109.47270 * 325.59113 * 17 15 13 21 21 C 1.38578 * 120.00643 * 359.44437 * 5 4 3 22 22 C 1.39494 * 119.77835 * 0.27833 * 21 5 4 23 23 C 1.47843 * 120.10877 * 180.02562 * 22 21 5 24 24 N 1.31218 * 125.72283 * 314.16879 * 23 22 21 25 25 C 1.34166 * 108.63944 * 179.83640 * 24 23 22 26 26 C 1.34543 * 107.83787 * 0.42270 * 25 24 23 27 27 O 1.34418 * 125.72489 * 134.47209 * 23 22 21 28 28 H 1.09000 * 109.46835 * 264.37802 * 1 2 3 29 29 H 1.08999 * 109.46866 * 24.38257 * 1 2 3 30 30 H 1.09000 * 109.46575 * 144.38001 * 1 2 3 31 31 H 1.07999 * 119.89537 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.89051 * 180.26868 * 4 3 2 33 33 H 0.97003 * 120.00173 * 324.48350 * 6 5 4 34 34 H 0.97007 * 120.00082 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.47148 * 176.16046 * 12 10 9 36 36 H 1.08998 * 109.47609 * 296.15927 * 12 10 9 37 37 H 1.08999 * 109.47131 * 56.16539 * 12 10 9 38 38 H 0.97006 * 120.00247 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.11372 * 180.29740 * 21 5 4 40 40 H 1.08002 * 126.07700 * 180.14249 * 25 24 23 41 41 H 1.08001 * 126.35935 * 179.75979 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1953 0.0000 4 6 3.5793 1.2006 0.0053 5 6 4.2834 0.0023 -0.0010 6 7 5.6831 0.0131 -0.0015 7 6 6.3646 -0.9352 0.6714 8 8 5.7671 -1.8495 1.2056 9 7 7.7083 -0.8699 0.7524 10 6 8.4491 -1.9004 1.4843 11 1 7.9545 -2.8633 1.3563 12 6 8.4886 -1.5410 2.9709 13 6 9.8557 -1.9830 0.9498 14 1 10.3412 -1.0971 0.5682 15 6 10.5226 -3.1897 0.9480 16 7 11.7327 -3.2715 0.4396 17 14 9.7075 -4.7085 1.6679 18 1 8.8589 -5.3524 0.6331 19 1 10.7512 -5.6646 2.1172 20 1 8.8643 -4.3161 2.8256 21 6 3.5999 -1.2032 -0.0010 22 6 2.2050 -1.2086 -0.0005 23 6 1.4684 -2.4905 0.0002 24 7 1.7299 -3.5248 -0.7637 25 6 0.8552 -4.5011 -0.4779 26 6 0.0295 -4.0466 0.4823 27 8 0.4147 -2.7899 0.7794 28 1 -0.3633 -0.1007 1.0227 29 1 -0.3633 0.9360 -0.4242 30 1 -0.3632 -0.8354 -0.5985 31 1 1.6555 2.1296 0.0004 32 1 4.1139 2.1390 0.0096 33 1 6.1627 0.7031 -0.4862 34 1 8.1850 -0.1405 0.3260 35 1 8.9801 -2.3408 3.5251 36 1 9.0427 -0.6121 3.1056 37 1 7.4714 -1.4144 3.3413 38 1 12.2022 -4.1204 0.4387 39 1 4.1453 -2.1353 -0.0010 40 1 0.8175 -5.4766 -0.9399 41 1 -0.7896 -4.5885 0.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163337686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:02 Heat of formation + Delta-G solvation = 22.512384 kcal Electronic energy + Delta-G solvation = -25452.087098 eV Core-core repulsion = 21719.914724 eV Total energy + Delta-G solvation = -3732.172375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.33717 -40.37449 -38.75772 -35.55053 -34.83065 -34.51862 -32.53199 -32.16723 -31.53875 -29.53078 -29.15764 -26.34065 -25.27957 -24.09108 -22.73037 -22.24132 -21.44193 -20.57616 -19.90183 -18.47045 -18.17890 -16.86116 -16.77152 -16.41570 -15.64446 -15.44522 -15.23152 -14.89193 -14.58712 -14.19504 -14.00377 -13.85047 -13.54990 -13.26653 -13.24337 -12.62846 -12.53531 -12.41021 -12.18053 -11.82693 -11.59402 -11.49861 -11.36801 -11.22881 -10.81154 -10.64047 -10.45693 -10.14111 -9.90940 -9.58226 -9.42342 -9.20221 -8.76732 -8.57661 -8.27271 -7.84500 -6.24773 -4.28653 0.71562 1.31688 1.56853 2.55354 2.68175 3.05274 3.28597 3.34926 3.41911 3.47824 3.79897 4.00323 4.32091 4.65176 4.73677 4.77733 4.88613 4.90415 5.03081 5.17968 5.19507 5.38266 5.43568 5.51552 5.61486 5.70805 5.81735 5.87913 6.09836 6.18316 6.26427 6.33646 6.45696 6.50881 6.52568 6.66612 6.85432 7.03144 7.08702 7.31555 7.45819 7.52948 7.63675 8.22418 8.61857 8.76210 9.07482 9.37238 10.86805 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003492 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.289684 B = 8016.545104 C = 9349.770665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.079 4.079 3 C -0.103 4.103 4 C -0.128 4.128 5 C 0.173 3.827 6 N -0.694 5.694 7 C 0.692 3.308 8 O -0.585 6.585 9 N -0.712 5.712 10 C 0.250 3.750 11 H 0.049 0.951 12 C -0.152 4.152 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.889 5.889 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.258 1.258 21 C -0.069 4.069 22 C -0.009 4.009 23 C 0.246 3.754 24 N -0.468 5.468 25 C -0.040 4.040 26 C -0.083 4.083 27 O -0.195 6.195 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.407 0.593 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.154 0.846 40 H 0.185 0.815 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.156 7.402 -1.522 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.149 4.149 5 C 0.077 3.923 6 N -0.342 5.342 7 C 0.393 3.607 8 O -0.463 6.463 9 N -0.363 5.363 10 C 0.147 3.853 11 H 0.067 0.933 12 C -0.211 4.211 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.525 5.525 17 Si 0.699 3.301 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.182 1.182 21 C -0.090 4.090 22 C -0.011 4.011 23 C 0.042 3.958 24 N -0.197 5.197 25 C -0.180 4.180 26 C -0.153 4.153 27 O -0.081 6.081 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.242 0.758 34 H 0.225 0.775 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.202 0.798 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.914 6.391 -1.434 23.832 hybrid contribution -0.335 -0.452 0.395 0.688 sum -23.250 5.939 -1.040 24.019 Atomic orbital electron populations 1.20777 0.90811 1.02564 1.02610 1.19849 0.96097 0.91752 1.00413 1.20630 0.93207 0.97054 1.01288 1.21063 0.94320 0.96784 1.02738 1.17296 0.82495 0.93078 0.99476 1.42780 1.03961 1.32716 1.54716 1.16234 0.83005 0.82095 0.79409 1.90876 1.68118 1.34997 1.52346 1.45891 1.03035 1.30623 1.56753 1.18978 0.91427 0.86952 0.87956 0.93328 1.22302 0.98822 1.01185 0.98752 1.20992 0.96074 0.96964 1.42937 0.90277 1.24899 0.94821 0.98619 0.93922 1.69878 1.12399 1.26521 1.43681 0.86939 0.79417 0.82828 0.80888 1.19799 1.21145 1.18241 1.21393 0.91575 0.99521 0.96533 1.16936 0.91457 0.85963 1.06715 1.23799 0.87048 0.95591 0.89385 1.70787 1.25160 0.99766 1.23982 1.23420 0.94358 1.00541 0.99632 1.25110 1.03991 0.83816 1.02421 1.84579 1.40630 1.29919 1.52949 0.90801 0.91158 0.92023 0.85007 0.85113 0.75801 0.77503 0.92678 0.93423 0.95172 0.92195 0.82801 0.79790 0.76762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 8.98 36.01 0.32 -0.69 16 2 C -0.08 -0.93 5.91 -104.20 -0.62 -1.54 16 3 C -0.10 -1.03 9.65 -39.67 -0.38 -1.42 16 4 C -0.13 -1.40 9.96 -39.31 -0.39 -1.79 16 5 C 0.17 2.50 6.29 -83.74 -0.53 1.97 16 6 N -0.69 -10.14 5.34 -14.26 -0.08 -10.22 16 7 C 0.69 13.45 8.37 -86.92 -0.73 12.72 16 8 O -0.59 -13.59 13.44 5.29 0.07 -13.52 16 9 N -0.71 -14.11 5.07 -59.81 -0.30 -14.41 16 10 C 0.25 5.93 2.14 -69.08 -0.15 5.78 16 11 H 0.05 1.27 5.23 -51.93 -0.27 1.00 16 12 C -0.15 -3.34 9.30 37.15 0.35 -2.99 16 13 C -0.53 -14.18 9.05 -34.44 -0.31 -14.49 16 14 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 17 Si 0.87 21.61 26.36 -169.99 -4.48 17.13 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.26 -6.23 6.09 56.52 0.34 -5.89 16 21 C -0.07 -1.15 8.43 -38.99 -0.33 -1.47 16 22 C -0.01 -0.13 5.87 -105.00 -0.62 -0.75 16 23 C 0.25 3.72 6.64 -13.89 -0.09 3.63 16 24 N -0.47 -7.44 11.33 -11.72 -0.13 -7.58 16 25 C -0.04 -0.47 11.87 -17.84 -0.21 -0.68 16 26 C -0.08 -0.83 12.17 29.43 0.36 -0.47 16 27 O -0.19 -2.53 9.71 4.11 0.04 -2.49 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 30 H 0.06 0.61 7.03 -51.93 -0.37 0.24 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.41 4.42 8.84 -40.82 -0.36 4.06 16 34 H 0.39 6.65 8.61 -40.82 -0.35 6.30 16 35 H 0.05 1.23 6.70 -51.93 -0.35 0.88 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.15 3.08 6.22 -52.49 -0.33 2.76 16 40 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -34.61 349.34 -7.29 -41.90 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.02 Total: 9.25 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.42 Total: 0.00 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.26 Total: -57.53 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.11 Total: -16.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.48 Total: 17.13 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.61 -7.29 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163337686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.409 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds