Wall clock time and date at job start Tue Mar 31 2020 11:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38025 * 120.00029 * 2 1 4 4 C 1.38212 * 120.21843 * 179.74792 * 3 2 1 5 5 C 1.38988 * 120.21932 * 0.55331 * 4 3 2 6 6 N 1.39973 * 119.99559 * 179.72565 * 5 4 3 7 7 C 1.34780 * 120.00026 * 144.49402 * 6 5 4 8 8 O 1.21586 * 119.99669 * 4.81354 * 7 6 5 9 9 N 1.34774 * 120.00034 * 184.82371 * 7 6 5 10 10 C 1.46504 * 120.00172 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46883 * 34.99491 * 10 9 7 12 12 C 1.52994 * 109.46889 * 274.99641 * 10 9 7 13 13 C 1.50700 * 109.46981 * 154.99708 * 10 9 7 14 14 H 1.07990 * 120.00196 * 31.93598 * 13 10 9 15 15 C 1.37875 * 119.99474 * 211.93783 * 13 10 9 16 16 N 1.31516 * 119.99822 * 177.66286 * 15 13 10 17 17 Si 1.86797 * 120.00363 * 357.65803 * 15 13 10 18 18 H 1.48505 * 109.47096 * 85.59272 * 17 15 13 19 19 H 1.48506 * 109.47227 * 205.59053 * 17 15 13 20 20 H 1.48498 * 109.47270 * 325.59113 * 17 15 13 21 21 C 1.38578 * 120.00643 * 359.44437 * 5 4 3 22 22 C 1.39494 * 119.77835 * 0.27833 * 21 5 4 23 23 C 1.47843 * 120.10877 * 180.02562 * 22 21 5 24 24 N 1.31218 * 125.72283 * 314.16879 * 23 22 21 25 25 C 1.34166 * 108.63944 * 179.83640 * 24 23 22 26 26 C 1.34543 * 107.83787 * 0.42270 * 25 24 23 27 27 O 1.34418 * 125.72489 * 134.47209 * 23 22 21 28 28 H 1.09000 * 109.46835 * 264.37802 * 1 2 3 29 29 H 1.08999 * 109.46866 * 24.38257 * 1 2 3 30 30 H 1.09000 * 109.46575 * 144.38001 * 1 2 3 31 31 H 1.07999 * 119.89537 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.89051 * 180.26868 * 4 3 2 33 33 H 0.97003 * 120.00173 * 324.48350 * 6 5 4 34 34 H 0.97007 * 120.00082 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.47148 * 176.16046 * 12 10 9 36 36 H 1.08998 * 109.47609 * 296.15927 * 12 10 9 37 37 H 1.08999 * 109.47131 * 56.16539 * 12 10 9 38 38 H 0.97006 * 120.00247 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.11372 * 180.29740 * 21 5 4 40 40 H 1.08002 * 126.07700 * 180.14249 * 25 24 23 41 41 H 1.08001 * 126.35935 * 179.75979 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1953 0.0000 4 6 3.5793 1.2006 0.0053 5 6 4.2834 0.0023 -0.0010 6 7 5.6831 0.0131 -0.0015 7 6 6.3646 -0.9352 0.6714 8 8 5.7671 -1.8495 1.2056 9 7 7.7083 -0.8699 0.7524 10 6 8.4491 -1.9004 1.4843 11 1 7.9545 -2.8633 1.3563 12 6 8.4886 -1.5410 2.9709 13 6 9.8557 -1.9830 0.9498 14 1 10.3412 -1.0971 0.5682 15 6 10.5226 -3.1897 0.9480 16 7 11.7327 -3.2715 0.4396 17 14 9.7075 -4.7085 1.6679 18 1 8.8589 -5.3524 0.6331 19 1 10.7512 -5.6646 2.1172 20 1 8.8643 -4.3161 2.8256 21 6 3.5999 -1.2032 -0.0010 22 6 2.2050 -1.2086 -0.0005 23 6 1.4684 -2.4905 0.0002 24 7 1.7299 -3.5248 -0.7637 25 6 0.8552 -4.5011 -0.4779 26 6 0.0295 -4.0466 0.4823 27 8 0.4147 -2.7899 0.7794 28 1 -0.3633 -0.1007 1.0227 29 1 -0.3633 0.9360 -0.4242 30 1 -0.3632 -0.8354 -0.5985 31 1 1.6555 2.1296 0.0004 32 1 4.1139 2.1390 0.0096 33 1 6.1627 0.7031 -0.4862 34 1 8.1850 -0.1405 0.3260 35 1 8.9801 -2.3408 3.5251 36 1 9.0427 -0.6121 3.1056 37 1 7.4714 -1.4144 3.3413 38 1 12.2022 -4.1204 0.4387 39 1 4.1453 -2.1353 -0.0010 40 1 0.8175 -5.4766 -0.9399 41 1 -0.7896 -4.5885 0.9316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163337686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:02 Heat of formation + Delta-G solvation = -4.533431 kcal Electronic energy + Delta-G solvation = -25453.259893 eV Core-core repulsion = 21719.914724 eV Total energy + Delta-G solvation = -3733.345169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.29341 -41.67674 -39.96601 -37.10576 -36.01875 -35.82829 -34.46643 -33.15974 -32.75245 -31.11055 -30.10982 -27.39612 -27.22111 -25.10909 -23.73196 -23.48595 -22.62660 -21.74421 -21.56039 -20.05916 -19.28996 -18.41527 -17.86946 -17.69806 -17.01792 -16.65388 -16.36898 -16.13325 -16.05184 -15.50877 -15.20682 -15.04803 -14.65807 -14.58003 -14.44247 -14.27048 -14.12501 -13.57021 -13.28755 -13.17368 -13.01282 -12.81710 -12.73283 -12.51149 -12.35875 -12.29838 -11.87850 -11.66442 -11.41667 -11.24249 -11.03788 -10.89631 -10.41684 -9.93308 -9.53457 -8.97429 -8.41184 -6.46914 -0.24528 0.30693 0.64938 1.26838 1.32471 1.42541 1.57835 1.68711 1.80402 2.11807 2.25355 2.70509 2.95353 3.10838 3.40186 3.85968 3.91443 4.02143 4.07538 4.19300 4.32289 4.42149 4.49143 4.64508 4.70669 4.73203 4.79498 4.80560 4.85421 4.91043 5.05073 5.11056 5.20466 5.24646 5.26789 5.35045 5.44148 5.50560 5.53158 5.69656 5.94484 5.96803 6.27249 6.58510 6.67972 7.13529 7.21349 7.58489 8.73572 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003492 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.289684 B = 8016.545104 C = 9349.770665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.075 4.075 3 C -0.090 4.090 4 C -0.109 4.109 5 C 0.147 3.853 6 N -0.674 5.674 7 C 0.692 3.308 8 O -0.626 6.626 9 N -0.710 5.710 10 C 0.255 3.745 11 H 0.023 0.977 12 C -0.143 4.143 13 C -0.525 4.525 14 H 0.062 0.938 15 C 0.036 3.964 16 N -0.928 5.928 17 Si 0.921 3.079 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.250 1.250 21 C -0.100 4.100 22 C -0.030 4.030 23 C 0.222 3.778 24 N -0.511 5.511 25 C -0.069 4.069 26 C -0.059 4.059 27 O -0.199 6.199 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.426 0.574 34 H 0.406 0.594 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.271 0.729 39 H 0.106 0.894 40 H 0.209 0.791 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.093 9.593 -0.926 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.077 4.077 3 C -0.108 4.108 4 C -0.130 4.130 5 C 0.052 3.948 6 N -0.323 5.323 7 C 0.392 3.608 8 O -0.507 6.507 9 N -0.363 5.363 10 C 0.150 3.850 11 H 0.041 0.959 12 C -0.202 4.202 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.165 4.165 16 N -0.567 5.567 17 Si 0.746 3.254 18 H -0.208 1.208 19 H -0.200 1.200 20 H -0.174 1.174 21 C -0.122 4.122 22 C -0.032 4.032 23 C 0.018 3.982 24 N -0.241 5.241 25 C -0.208 4.208 26 C -0.129 4.129 27 O -0.085 6.085 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.196 0.804 32 H 0.187 0.813 33 H 0.265 0.735 34 H 0.242 0.758 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.226 0.774 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -25.875 8.643 -0.861 27.294 hybrid contribution 0.409 -1.097 0.154 1.181 sum -25.466 7.546 -0.707 26.570 Atomic orbital electron populations 1.20827 0.88759 1.03761 1.03060 1.20281 0.97644 0.91152 0.98651 1.21185 0.92915 0.98060 0.98686 1.21453 0.94863 0.96520 1.00134 1.17532 0.81980 0.93820 1.01464 1.42407 1.04313 1.31834 1.53786 1.16290 0.82610 0.82392 0.79466 1.90864 1.68845 1.36880 1.54111 1.45457 1.03428 1.30358 1.57043 1.18690 0.89789 0.87114 0.89376 0.95884 1.22175 0.99252 1.01679 0.97103 1.21177 0.97221 0.96153 1.41826 0.92005 1.25524 0.95240 1.01141 0.94593 1.69963 1.13706 1.27334 1.45662 0.86172 0.78707 0.80268 0.80255 1.20806 1.19987 1.17434 1.21111 0.92661 0.98662 0.99804 1.17150 0.90917 0.87332 1.07769 1.23917 0.88115 0.95938 0.90258 1.70728 1.26835 1.01196 1.25373 1.23957 0.94587 1.01168 1.01093 1.26096 1.03663 0.82475 1.00657 1.84576 1.40090 1.31209 1.52638 0.90126 0.88005 0.93208 0.80396 0.81322 0.73534 0.75824 0.93195 0.91917 0.94740 0.91981 0.87565 0.77414 0.71731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 8.98 71.24 0.64 -1.01 16 2 C -0.08 -1.61 5.91 -19.59 -0.12 -1.72 16 3 C -0.09 -1.43 9.65 22.21 0.21 -1.22 16 4 C -0.11 -2.01 9.96 22.44 0.22 -1.79 16 5 C 0.15 4.18 6.29 38.10 0.24 4.42 16 6 N -0.67 -19.39 5.34 -317.28 -1.69 -21.08 16 7 C 0.69 27.35 8.37 179.05 1.50 28.85 16 8 O -0.63 -30.37 13.44 -3.99 -0.05 -30.42 16 9 N -0.71 -28.28 5.07 -461.41 -2.34 -30.63 16 10 C 0.25 12.21 2.14 44.24 0.09 12.31 16 11 H 0.02 1.24 5.23 -2.39 -0.01 1.23 16 12 C -0.14 -6.23 9.30 71.98 0.67 -5.56 16 13 C -0.53 -28.43 9.05 25.60 0.23 -28.20 16 14 H 0.06 3.50 8.06 -2.92 -0.02 3.48 16 15 C 0.04 2.03 5.47 84.65 0.46 2.49 16 16 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16 17 Si 0.92 45.36 26.36 68.60 1.81 47.17 16 18 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.25 -11.91 6.09 99.48 0.61 -11.31 16 21 C -0.10 -3.52 8.43 22.65 0.19 -3.33 16 22 C -0.03 -0.90 5.87 -20.11 -0.12 -1.02 16 23 C 0.22 6.94 6.64 87.33 0.58 7.52 16 24 N -0.51 -17.11 11.33 -305.07 -3.46 -20.57 16 25 C -0.07 -1.65 11.87 83.49 0.99 -0.66 16 26 C -0.06 -1.10 12.17 66.97 0.82 -0.28 16 27 O -0.20 -5.08 9.71 -8.19 -0.08 -5.16 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 0.91 8.05 -2.39 -0.02 0.89 16 30 H 0.05 0.90 7.03 -2.39 -0.02 0.88 16 31 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.43 8.58 8.84 -92.71 -0.82 7.76 16 34 H 0.41 13.63 8.61 -92.70 -0.80 12.83 16 35 H 0.05 2.19 6.70 -2.38 -0.02 2.17 16 36 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.11 4.71 6.22 -2.91 -0.02 4.69 16 40 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.27 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -80.94 349.34 0.48 -80.47 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.63 Total: 24.65 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.62 Total: 10.79 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -7.19 Total: -127.50 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.13 Total: -35.58 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.81 Total: 47.17 kcal Total: -80.94 0.48 -80.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163337686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.935 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds