Wall clock time and date at job start Tue Mar 31 2020 10:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39676 * 120.00536 * 260.27896 * 3 2 1 5 5 C 1.37728 * 119.99538 * 179.76927 * 4 3 2 6 6 C 1.39623 * 120.00456 * 0.50586 * 5 4 3 7 7 C 1.47905 * 119.99775 * 179.72183 * 6 5 4 8 8 O 1.21544 * 120.00349 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99982 * 0.02562 * 7 6 5 10 10 C 1.46495 * 120.00339 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47114 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00378 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99799 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99914 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47291 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47620 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47285 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00429 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99848 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99838 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99716 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47255 * 90.00031 * 21 19 17 23 23 H 1.48501 * 109.46493 * 209.99989 * 21 19 17 24 24 H 1.48502 * 109.47054 * 329.99338 * 21 19 17 25 25 C 1.39630 * 120.01029 * 359.74540 * 6 5 4 26 26 C 1.37725 * 120.00781 * 359.97438 * 25 6 5 27 27 H 1.08007 * 119.99927 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.99681 * 180.23002 * 5 4 3 29 29 H 0.97005 * 119.99834 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.47168 * 300.00120 * 10 9 7 31 31 H 1.09008 * 109.46980 * 59.99975 * 10 9 7 32 32 H 0.96998 * 120.00159 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.47225 * 300.00451 * 14 13 11 34 34 H 1.08995 * 109.46783 * 60.00280 * 14 13 11 35 35 H 1.09005 * 109.47486 * 300.00696 * 15 14 13 36 36 H 1.09008 * 109.46998 * 60.00025 * 15 14 13 37 37 H 1.09009 * 109.46607 * 300.00371 * 16 15 14 38 38 H 1.08995 * 109.46674 * 59.99818 * 16 15 14 39 39 H 0.96998 * 119.99767 * 180.02562 * 20 19 17 40 40 H 1.08002 * 119.99839 * 179.97438 * 25 6 5 41 41 H 1.07994 * 120.00820 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2664 0.2052 1.1922 5 6 4.6436 0.2010 1.1928 6 6 5.3418 0.0029 -0.0001 7 6 6.8208 0.0046 -0.0003 8 8 7.4286 -0.1674 -1.0387 9 7 7.4947 0.1969 1.1511 10 6 8.9596 0.1980 1.1510 11 6 9.4618 0.4325 2.5524 12 8 8.6737 0.5833 3.4617 13 7 10.7869 0.4736 2.7953 14 6 11.2751 0.7009 4.1578 15 6 12.8051 0.7022 4.1577 16 6 13.3150 0.9391 5.5807 17 6 14.8220 0.9410 5.5804 18 1 15.3621 0.7881 4.6578 19 6 15.5113 1.1379 6.7583 20 7 16.8264 1.1390 6.7581 21 14 14.5771 1.4015 8.3542 22 1 14.3318 0.0904 9.0067 23 1 15.3785 2.2631 9.2602 24 1 13.2784 2.0610 8.0645 25 6 4.6438 -0.1964 -1.1929 26 6 3.2666 -0.1981 -1.1930 27 1 2.7263 0.3625 2.1142 28 1 5.1836 0.3555 2.1152 29 1 7.0096 0.3345 1.9798 30 1 9.3237 -0.7640 0.7904 31 1 9.3223 0.9918 0.4979 32 1 11.4173 0.3526 2.0681 33 1 10.9113 1.6631 4.5183 34 1 10.9121 -0.0926 4.8109 35 1 13.1693 -0.2597 3.7970 36 1 13.1677 1.4961 3.5046 37 1 12.9508 1.9010 5.9417 38 1 12.9524 0.1450 6.2333 39 1 17.3113 1.2772 7.5868 40 1 5.1840 -0.3492 -2.1155 41 1 2.7268 -0.3518 -2.1157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170902454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:36 Heat of formation + Delta-G solvation = -51.926589 kcal Electronic energy + Delta-G solvation = -23338.189725 eV Core-core repulsion = 19602.789434 eV Total energy + Delta-G solvation = -3735.400291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54520 -40.67632 -39.57522 -37.50229 -37.08106 -35.64604 -35.15071 -33.37863 -32.77771 -32.15062 -29.94167 -28.19033 -25.78248 -24.42235 -23.65403 -22.23942 -21.89548 -21.44148 -20.01846 -19.48370 -18.91565 -17.67469 -17.36714 -17.13057 -16.77166 -16.30066 -16.23308 -15.95263 -15.73406 -15.50274 -15.27362 -15.09440 -14.76228 -14.66107 -14.49567 -14.09380 -14.00914 -13.93168 -13.77116 -13.45983 -13.22702 -13.17514 -12.71702 -12.67032 -12.13709 -11.92683 -11.77200 -11.56905 -11.31120 -11.23934 -11.01767 -10.74482 -10.38980 -10.12220 -10.09983 -9.99602 -8.27663 -6.31663 -0.69264 0.29798 1.37346 1.38627 1.40427 1.50254 1.51707 1.53872 1.71209 2.14780 2.37919 2.40164 2.72039 2.85892 3.08494 3.54440 3.67902 3.80898 3.86267 4.12744 4.17928 4.23090 4.34347 4.36098 4.39746 4.53719 4.61473 4.92250 4.92547 4.95601 5.03531 5.06375 5.16168 5.17570 5.26394 5.36798 5.52477 5.59069 5.65115 5.67348 6.29277 6.35393 6.37503 6.47640 6.77248 7.04145 7.12431 7.33421 8.88756 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.001690 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.203301 B =16561.547946 C =17417.699290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.277 3.723 3 C -0.009 4.009 4 C -0.069 4.069 5 C -0.081 4.081 6 C -0.114 4.114 7 C 0.559 3.441 8 O -0.565 6.565 9 N -0.708 5.708 10 C 0.104 3.896 11 C 0.509 3.491 12 O -0.575 6.575 13 N -0.711 5.711 14 C 0.127 3.873 15 C -0.103 4.103 16 C -0.013 4.013 17 C -0.532 4.532 18 H 0.037 0.963 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.245 1.245 25 C -0.064 4.064 26 C -0.068 4.068 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.417 0.583 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.418 0.582 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.150 0.850 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.478 -2.591 -15.508 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.038 4.038 3 C -0.012 4.012 4 C -0.089 4.089 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.348 3.652 8 O -0.444 6.444 9 N -0.363 5.363 10 C -0.023 4.023 11 C 0.295 3.705 12 O -0.455 6.455 13 N -0.363 5.363 14 C 0.004 3.996 15 C -0.141 4.141 16 C -0.051 4.051 17 C -0.570 4.570 18 H 0.055 0.945 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.771 3.229 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.168 1.168 25 C -0.083 4.083 26 C -0.088 4.088 27 H 0.178 0.822 28 H 0.172 0.828 29 H 0.257 0.743 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.167 0.833 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.178 -2.580 -15.459 33.121 hybrid contribution 0.988 0.136 0.941 1.371 sum -28.190 -2.444 -14.518 31.803 Atomic orbital electron populations 1.81326 1.13471 1.09876 1.08588 1.25845 0.92701 0.92629 0.92595 1.16239 0.83379 1.05530 0.96087 1.21347 0.93736 0.96212 0.97586 1.21453 0.94136 0.96746 0.97672 1.20094 0.91703 1.04144 0.95840 1.18486 0.87927 0.75994 0.82840 1.90795 1.70444 1.50664 1.32540 1.45631 1.06478 1.72727 1.11500 1.21148 0.81531 1.06307 0.93325 1.20790 0.82663 0.75967 0.91041 1.90681 1.55932 1.51625 1.47282 1.45888 1.06878 1.72008 1.11481 1.21330 0.94166 1.01238 0.82903 1.21499 0.92315 1.02155 0.98124 1.19472 0.93887 0.96839 0.94882 1.21502 0.92104 1.48639 0.94738 0.94495 1.26000 0.95558 0.94484 1.03243 1.70064 1.08308 1.52090 1.28756 0.85694 0.79597 0.78937 0.78650 1.19309 1.21281 1.16835 1.21284 0.93543 0.95422 0.98013 1.21336 0.93455 0.96427 0.97596 0.82203 0.82822 0.74327 0.86498 0.86513 0.74479 0.92016 0.91940 0.91675 0.91687 0.96008 0.96118 0.92585 0.83271 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.45 18.54 19.00 0.35 -8.10 16 2 C 0.28 3.45 15.32 88.33 1.35 4.80 16 3 C -0.01 -0.07 5.73 -21.34 -0.12 -0.19 16 4 C -0.07 -0.40 9.73 22.50 0.22 -0.19 16 5 C -0.08 -0.58 9.52 22.48 0.21 -0.37 16 6 C -0.11 -1.25 5.88 -20.05 -0.12 -1.37 16 7 C 0.56 8.86 7.77 86.80 0.67 9.54 16 8 O -0.56 -12.43 16.33 -3.85 -0.06 -12.49 16 9 N -0.71 -10.11 5.48 -469.65 -2.57 -12.68 16 10 C 0.10 1.45 6.15 85.63 0.53 1.98 16 11 C 0.51 10.04 7.90 87.66 0.69 10.74 16 12 O -0.58 -15.11 15.67 -3.01 -0.05 -15.15 16 13 N -0.71 -14.05 5.56 -463.07 -2.57 -16.62 16 14 C 0.13 3.41 5.67 86.38 0.49 3.90 16 15 C -0.10 -3.35 5.27 30.59 0.16 -3.19 16 16 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 17 C -0.53 -29.24 9.66 25.60 0.25 -28.99 16 18 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 19 C 0.00 0.22 5.47 84.66 0.46 0.69 16 20 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 21 Si 0.95 42.99 27.47 68.60 1.88 44.87 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.24 -10.24 6.54 99.48 0.65 -9.58 16 25 C -0.06 -0.58 9.58 22.48 0.22 -0.36 16 26 C -0.07 -0.43 9.73 22.50 0.22 -0.21 16 27 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 28 H 0.15 0.68 6.39 -2.91 -0.02 0.66 16 29 H 0.42 5.37 5.46 -92.70 -0.51 4.87 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.42 6.01 8.47 -92.71 -0.79 5.22 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.02 0.92 7.20 -2.38 -0.02 0.91 16 38 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.15 1.35 7.64 -2.91 -0.02 1.32 16 41 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -75.69 365.17 2.38 -73.31 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -0.26 Total: 8.68 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.36 Total: -3.66 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -4.49 Total: -95.56 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.11 Total: -27.65 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -75.69 2.38 -73.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.382 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds