Wall clock time and date at job start Tue Mar 31 2020 11:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40049 * 119.96159 * 2 1 4 4 C 1.36458 * 119.52181 * 179.97438 * 3 2 1 5 5 C 1.40475 * 119.52638 * 0.03350 * 4 3 2 6 6 N 1.33573 * 119.23973 * 179.97438 * 5 4 3 7 7 C 1.31686 * 121.70404 * 179.62751 * 6 5 4 8 8 C 1.40166 * 119.80726 * 0.69031 * 7 6 5 9 9 C 1.46745 * 120.75387 * 179.64046 * 8 7 6 10 10 O 1.21696 * 119.99919 * 354.24844 * 9 8 7 11 11 N 1.34769 * 120.00047 * 174.24948 * 9 8 7 12 12 C 1.46504 * 120.00303 * 185.13766 * 11 9 8 13 13 C 1.52992 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47193 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00420 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99720 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46974 * 89.99899 * 19 17 15 21 21 H 1.48497 * 109.47406 * 209.99817 * 19 17 15 22 22 H 1.48498 * 109.47078 * 330.00015 * 19 17 15 23 23 C 1.41590 * 118.49201 * 359.37168 * 8 7 6 24 24 O 1.21861 * 120.61152 * 180.29581 * 23 8 7 25 25 N 1.35068 * 118.77543 * 0.27365 * 23 8 7 26 26 C 1.35323 * 119.96031 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46623 * 269.97396 * 1 2 3 28 28 H 1.09004 * 109.47084 * 29.96779 * 1 2 3 29 29 H 1.08997 * 109.47215 * 149.97499 * 1 2 3 30 30 H 1.07993 * 120.23979 * 0.03332 * 3 2 1 31 31 H 1.07998 * 120.23688 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.09574 * 180.33871 * 7 6 5 33 33 H 0.97000 * 120.00277 * 5.13038 * 11 9 8 34 34 H 1.09003 * 109.46676 * 299.99619 * 12 11 9 35 35 H 1.09000 * 109.47206 * 59.98951 * 12 11 9 36 36 H 1.09003 * 109.47020 * 299.99540 * 13 12 11 37 37 H 1.09003 * 109.47082 * 59.99781 * 13 12 11 38 38 H 1.09003 * 109.46882 * 299.99836 * 14 13 12 39 39 H 1.09000 * 109.47067 * 59.99209 * 14 13 12 40 40 H 0.97004 * 120.00013 * 179.97438 * 18 17 15 41 41 H 1.07992 * 119.61699 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.2133 0.0000 4 6 3.5710 1.2029 0.0005 5 6 4.2539 -0.0247 0.0004 6 7 5.5896 -0.0283 0.0004 7 6 6.2787 -1.1505 0.0075 8 6 5.6069 -2.3806 0.0007 9 6 6.3541 -3.6437 0.0005 10 8 7.5669 -3.6331 -0.0994 11 7 5.6971 -4.8152 0.1108 12 6 6.4478 -6.0682 0.2240 13 6 5.4705 -7.2399 0.3361 14 6 6.2546 -8.5486 0.4536 15 6 5.2919 -9.7028 0.5634 16 1 4.2273 -9.5212 0.5511 17 6 5.7703 -10.9905 0.6807 18 7 7.0666 -11.2117 0.6963 19 14 4.5770 -12.4213 0.8175 20 1 4.2556 -12.9293 -0.5403 21 1 5.1963 -13.5076 1.6186 22 1 3.3306 -11.9644 1.4830 23 6 4.1910 -2.3770 -0.0002 24 8 3.5678 -3.4242 -0.0006 25 7 3.5439 -1.1915 -0.0001 26 6 2.1829 -1.1724 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6698 2.1505 0.0005 31 1 4.1220 2.1317 0.0010 32 1 7.3584 -1.1230 0.0128 33 1 4.7273 -4.8289 0.1155 34 1 7.0722 -6.1987 -0.6599 35 1 7.0784 -6.0350 1.1125 36 1 4.8465 -7.1092 1.2202 37 1 4.8398 -7.2732 -0.5523 38 1 6.8783 -8.6791 -0.4307 39 1 6.8857 -8.5155 1.3417 40 1 7.4031 -12.1177 0.7792 41 1 1.6360 -2.1036 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171505982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:36 Heat of formation + Delta-G solvation = -5.919058 kcal Electronic energy + Delta-G solvation = -24870.938815 eV Core-core repulsion = 21137.533560 eV Total energy + Delta-G solvation = -3733.405255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.22412 -39.75920 -38.47125 -37.92563 -35.16611 -34.89869 -33.21763 -33.10632 -31.29944 -30.43857 -28.24336 -26.97851 -25.68847 -24.07776 -23.78648 -23.02856 -20.98291 -20.41612 -19.06311 -18.92539 -18.31582 -17.17534 -16.75589 -16.25631 -16.18594 -15.68579 -15.28265 -15.06867 -14.86756 -14.41071 -14.37739 -14.15510 -13.75698 -13.66366 -13.53445 -13.29109 -12.96675 -12.47615 -12.44062 -12.20730 -11.72067 -11.56265 -11.17535 -10.89139 -10.83540 -10.66193 -10.54807 -10.42154 -9.87562 -9.81157 -9.72616 -9.26898 -9.02161 -8.54908 -8.29375 -8.17895 -5.94162 -3.96520 -0.59438 -0.09126 1.47302 1.50183 1.88865 2.90475 3.35452 3.35935 3.41590 3.45121 3.52109 3.66627 3.73680 3.83195 3.99095 4.08748 4.31902 4.50964 4.73756 4.75950 4.90184 4.94957 5.02353 5.15544 5.18243 5.36195 5.38384 5.41311 5.56361 5.81701 5.87091 5.95663 5.98324 6.34514 6.72912 6.77027 7.04740 7.15710 7.15996 7.21155 7.73588 7.87769 8.05741 8.08359 8.47866 8.67638 9.10220 9.66909 11.17255 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002504 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.097762 B =11179.063176 C =12562.822838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.023 4.023 4 C -0.134 4.134 5 C 0.395 3.605 6 N -0.545 5.545 7 C 0.256 3.744 8 C -0.352 4.352 9 C 0.578 3.422 10 O -0.557 6.557 11 N -0.715 5.715 12 C 0.116 3.884 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.524 3.476 24 O -0.513 6.513 25 N -0.419 5.419 26 C 0.099 3.901 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.410 0.590 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 32.650 -1.523 35.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.047 4.047 4 C -0.154 4.154 5 C 0.155 3.845 6 N -0.268 5.268 7 C 0.102 3.898 8 C -0.363 4.363 9 C 0.365 3.635 10 O -0.438 6.438 11 N -0.373 5.373 12 C -0.007 4.007 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.329 3.671 24 O -0.391 6.391 25 N -0.119 5.119 26 C -0.025 4.025 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.254 0.746 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.130 32.375 -1.561 34.971 hybrid contribution -1.349 -1.624 0.089 2.112 sum -14.478 30.752 -1.472 34.021 Atomic orbital electron populations 1.20753 0.87969 1.04187 1.03588 1.19782 0.98369 0.91365 1.04019 1.21627 0.93687 0.98964 0.90395 1.21067 0.94043 0.95844 1.04482 1.20854 0.89056 0.85596 0.88997 1.68985 1.01170 1.29017 1.27658 1.23374 1.01494 0.85168 0.79739 1.21579 0.91023 0.97555 1.26149 1.17088 0.86639 0.82817 0.77006 1.90784 1.13232 1.87530 1.52256 1.46640 1.12410 1.05981 1.72283 1.21622 0.95283 0.82207 1.01596 1.21864 0.97971 0.95086 1.00835 1.19036 0.95335 0.89441 0.97551 1.21232 0.93055 0.91463 1.50042 0.92668 1.25033 0.95092 0.98976 0.95439 1.69974 1.11955 1.20867 1.50603 0.86583 0.81167 0.82167 0.78005 1.20692 1.21237 1.19924 1.17341 0.88880 0.81830 0.79073 1.90718 1.68170 1.28210 1.52001 1.44375 1.08150 1.09948 1.49402 1.22365 0.82160 1.01997 0.96008 0.90059 0.90257 0.90456 0.82589 0.81087 0.79549 0.74581 0.91803 0.91936 0.92857 0.92820 0.96254 0.96267 0.93005 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.13 10.01 36.01 0.36 0.23 16 2 C -0.13 -0.48 5.85 -104.98 -0.61 -1.09 16 3 C -0.02 -0.05 9.75 -39.54 -0.39 -0.44 16 4 C -0.13 -0.60 9.95 -39.38 -0.39 -0.99 16 5 C 0.39 3.42 7.32 -155.81 -1.14 2.28 16 6 N -0.54 -5.64 10.28 -11.95 -0.12 -5.76 16 7 C 0.26 3.10 10.83 -16.89 -0.18 2.92 16 8 C -0.35 -5.20 5.93 -104.46 -0.62 -5.82 16 9 C 0.58 10.71 7.73 -12.83 -0.10 10.61 16 10 O -0.56 -11.60 16.42 5.19 0.09 -11.52 16 11 N -0.71 -13.64 5.47 -61.60 -0.34 -13.98 16 12 C 0.12 2.41 5.68 -4.04 -0.02 2.39 16 13 C -0.12 -2.69 5.27 -26.73 -0.14 -2.83 16 14 C 0.02 0.65 4.97 -27.88 -0.14 0.52 16 15 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 19 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.52 7.11 7.39 -14.85 -0.11 7.00 16 24 O -0.51 -7.95 13.35 5.04 0.07 -7.88 16 25 N -0.42 -4.09 2.76 -64.90 -0.18 -4.27 16 26 C 0.10 0.67 9.70 -16.69 -0.16 0.50 16 27 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.08 -0.01 8.09 -51.93 -0.42 -0.43 16 29 H 0.08 0.10 8.08 -51.93 -0.42 -0.32 16 30 H 0.16 -0.17 8.06 -52.49 -0.42 -0.59 16 31 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.19 2.05 7.70 -52.49 -0.40 1.64 16 33 H 0.41 7.59 5.11 -40.82 -0.21 7.38 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.19 1.18 7.32 -52.49 -0.38 0.80 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -37.31 352.81 -8.69 -46.00 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.18 Total: 0.69 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -4.06 Total: 1.19 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.10 Total: -51.07 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.15 Total: -19.40 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.31 -8.69 -46.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.085 kcal (2) G-P(sol) polarization free energy of solvation -37.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds