Wall clock time and date at job start Tue Mar 31 2020 11:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40049 * 119.96159 * 2 1 4 4 C 1.36458 * 119.52181 * 179.97438 * 3 2 1 5 5 C 1.40475 * 119.52638 * 0.03350 * 4 3 2 6 6 N 1.33573 * 119.23973 * 179.97438 * 5 4 3 7 7 C 1.31686 * 121.70404 * 179.62751 * 6 5 4 8 8 C 1.40166 * 119.80726 * 0.69031 * 7 6 5 9 9 C 1.46745 * 120.75387 * 179.64046 * 8 7 6 10 10 O 1.21696 * 119.99919 * 354.24844 * 9 8 7 11 11 N 1.34769 * 120.00047 * 174.24948 * 9 8 7 12 12 C 1.46504 * 120.00303 * 185.13766 * 11 9 8 13 13 C 1.52992 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47193 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00420 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99720 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00173 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46974 * 89.99899 * 19 17 15 21 21 H 1.48497 * 109.47406 * 209.99817 * 19 17 15 22 22 H 1.48498 * 109.47078 * 330.00015 * 19 17 15 23 23 C 1.41590 * 118.49201 * 359.37168 * 8 7 6 24 24 O 1.21861 * 120.61152 * 180.29581 * 23 8 7 25 25 N 1.35068 * 118.77543 * 0.27365 * 23 8 7 26 26 C 1.35323 * 119.96031 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46623 * 269.97396 * 1 2 3 28 28 H 1.09004 * 109.47084 * 29.96779 * 1 2 3 29 29 H 1.08997 * 109.47215 * 149.97499 * 1 2 3 30 30 H 1.07993 * 120.23979 * 0.03332 * 3 2 1 31 31 H 1.07998 * 120.23688 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.09574 * 180.33871 * 7 6 5 33 33 H 0.97000 * 120.00277 * 5.13038 * 11 9 8 34 34 H 1.09003 * 109.46676 * 299.99619 * 12 11 9 35 35 H 1.09000 * 109.47206 * 59.98951 * 12 11 9 36 36 H 1.09003 * 109.47020 * 299.99540 * 13 12 11 37 37 H 1.09003 * 109.47082 * 59.99781 * 13 12 11 38 38 H 1.09003 * 109.46882 * 299.99836 * 14 13 12 39 39 H 1.09000 * 109.47067 * 59.99209 * 14 13 12 40 40 H 0.97004 * 120.00013 * 179.97438 * 18 17 15 41 41 H 1.07992 * 119.61699 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.2133 0.0000 4 6 3.5710 1.2029 0.0005 5 6 4.2539 -0.0247 0.0004 6 7 5.5896 -0.0283 0.0004 7 6 6.2787 -1.1505 0.0075 8 6 5.6069 -2.3806 0.0007 9 6 6.3541 -3.6437 0.0005 10 8 7.5669 -3.6331 -0.0994 11 7 5.6971 -4.8152 0.1108 12 6 6.4478 -6.0682 0.2240 13 6 5.4705 -7.2399 0.3361 14 6 6.2546 -8.5486 0.4536 15 6 5.2919 -9.7028 0.5634 16 1 4.2273 -9.5212 0.5511 17 6 5.7703 -10.9905 0.6807 18 7 7.0666 -11.2117 0.6963 19 14 4.5770 -12.4213 0.8175 20 1 4.2556 -12.9293 -0.5403 21 1 5.1963 -13.5076 1.6186 22 1 3.3306 -11.9644 1.4830 23 6 4.1910 -2.3770 -0.0002 24 8 3.5678 -3.4242 -0.0006 25 7 3.5439 -1.1915 -0.0001 26 6 2.1829 -1.1724 -0.0005 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8903 -0.5134 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6698 2.1505 0.0005 31 1 4.1220 2.1317 0.0010 32 1 7.3584 -1.1230 0.0128 33 1 4.7273 -4.8289 0.1155 34 1 7.0722 -6.1987 -0.6599 35 1 7.0784 -6.0350 1.1125 36 1 4.8465 -7.1092 1.2202 37 1 4.8398 -7.2732 -0.5523 38 1 6.8783 -8.6791 -0.4307 39 1 6.8857 -8.5155 1.3417 40 1 7.4031 -12.1177 0.7792 41 1 1.6360 -2.1036 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171505982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:36 Heat of formation + Delta-G solvation = -31.364525 kcal Electronic energy + Delta-G solvation = -24872.042213 eV Core-core repulsion = 21137.533560 eV Total energy + Delta-G solvation = -3734.508653 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.97368 -40.90164 -39.55093 -38.68913 -36.94052 -35.58804 -35.13556 -33.77040 -33.06759 -31.48736 -28.75933 -28.65089 -26.75998 -25.00229 -24.70988 -24.28415 -22.35183 -22.24718 -20.02767 -19.83722 -18.97779 -18.56892 -17.99268 -17.76649 -17.03841 -16.78309 -16.67305 -16.42322 -15.90640 -15.64799 -15.41823 -15.12338 -14.95916 -14.87731 -14.29276 -14.28793 -13.79986 -13.58516 -13.46963 -13.37198 -13.13411 -12.76687 -12.68810 -12.60882 -12.41983 -11.89944 -11.75265 -11.64237 -11.59873 -11.45739 -11.28501 -10.91224 -10.58271 -10.56457 -10.08166 -9.03610 -8.21811 -6.34050 -1.26275 -0.65926 0.65194 0.77906 1.17482 1.38570 1.41264 1.52440 1.97430 2.26228 2.41359 2.61949 2.70970 2.94484 3.10919 3.25743 3.61008 3.65160 3.77085 3.89165 4.03596 4.13089 4.16950 4.28505 4.49080 4.61910 4.70929 4.73851 4.76733 4.86455 4.86825 4.93866 5.03308 5.08495 5.18749 5.21571 5.41563 5.43485 5.50642 5.64548 5.79425 6.18452 6.19925 6.40346 6.64574 6.81714 7.24055 7.35010 8.90556 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002504 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.097762 B =11179.063176 C =12562.822838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C 0.010 3.990 4 C -0.132 4.132 5 C 0.378 3.622 6 N -0.552 5.552 7 C 0.277 3.723 8 C -0.402 4.402 9 C 0.576 3.424 10 O -0.593 6.593 11 N -0.718 5.718 12 C 0.128 3.872 13 C -0.100 4.100 14 C 0.027 3.973 15 C -0.545 4.545 16 H 0.062 0.938 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.262 1.262 23 C 0.523 3.477 24 O -0.546 6.546 25 N -0.417 5.417 26 C 0.063 3.937 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.211 0.789 31 H 0.200 0.800 32 H 0.190 0.810 33 H 0.413 0.587 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.059 0.941 38 H -0.005 1.005 39 H -0.005 1.005 40 H 0.265 0.735 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 36.077 -1.474 40.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.014 4.014 4 C -0.152 4.152 5 C 0.143 3.857 6 N -0.275 5.275 7 C 0.118 3.882 8 C -0.414 4.414 9 C 0.366 3.634 10 O -0.477 6.477 11 N -0.377 5.377 12 C 0.004 3.996 13 C -0.138 4.138 14 C -0.010 4.010 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.795 3.205 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.186 1.186 23 C 0.329 3.671 24 O -0.427 6.427 25 N -0.113 5.113 26 C -0.060 4.060 27 H 0.112 0.888 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.228 0.772 31 H 0.217 0.783 32 H 0.207 0.793 33 H 0.258 0.742 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.192 35.883 -1.515 39.817 hybrid contribution -0.362 -2.344 0.067 2.372 sum -17.553 33.539 -1.448 37.882 Atomic orbital electron populations 1.20934 0.85563 1.05554 1.04728 1.20307 0.99817 0.90585 0.99519 1.22294 0.92794 1.00360 0.85923 1.21548 0.95111 0.94793 1.03742 1.21601 0.88901 0.86512 0.88713 1.69015 1.02268 1.27695 1.28567 1.23380 1.01751 0.84860 0.78258 1.21135 0.91836 0.96334 1.32093 1.17608 0.86490 0.83684 0.75635 1.90733 1.14724 1.88169 1.54059 1.46579 1.12427 1.05602 1.73074 1.21279 0.94752 0.82918 1.00657 1.21578 0.97584 0.93343 1.01309 1.18923 0.95074 0.91793 0.95241 1.21638 0.93665 0.92498 1.50472 0.91953 1.26060 0.97115 1.02283 0.94622 1.70118 1.14194 1.21879 1.51171 0.85352 0.78729 0.77902 0.78471 1.19630 1.20544 1.18624 1.17133 0.88589 0.82576 0.78771 1.90655 1.68680 1.29541 1.53789 1.44161 1.09306 1.09071 1.48791 1.22699 0.80884 1.03650 0.98817 0.88802 0.87445 0.90663 0.77236 0.78272 0.79315 0.74175 0.92976 0.92816 0.92185 0.92270 0.98698 0.98612 0.92651 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.01 71.24 0.71 1.00 16 2 C -0.10 -0.28 5.85 -20.10 -0.12 -0.40 16 3 C 0.01 -0.01 9.75 22.29 0.22 0.20 16 4 C -0.13 -0.59 9.95 22.40 0.22 -0.37 16 5 C 0.38 5.90 7.32 133.85 0.98 6.88 16 6 N -0.55 -11.12 10.28 -191.73 -1.97 -13.09 16 7 C 0.28 7.03 10.83 85.18 0.92 7.96 16 8 C -0.40 -12.76 5.93 -19.76 -0.12 -12.87 16 9 C 0.58 23.07 7.73 86.47 0.67 23.74 16 10 O -0.59 -26.65 16.42 -4.34 -0.07 -26.72 16 11 N -0.72 -29.40 5.47 -467.02 -2.56 -31.96 16 12 C 0.13 5.70 5.68 86.38 0.49 6.19 16 13 C -0.10 -4.72 5.27 30.59 0.16 -4.56 16 14 C 0.03 1.57 4.97 29.85 0.15 1.72 16 15 C -0.54 -32.84 9.11 25.60 0.23 -32.61 16 16 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -59.45 13.29 21.45 0.28 -59.17 16 19 Si 0.97 46.01 29.54 68.60 2.03 48.04 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.52 14.97 7.39 85.02 0.63 15.60 16 24 O -0.55 -18.02 13.35 -4.87 -0.06 -18.09 16 25 N -0.42 -7.94 2.76 -477.22 -1.32 -9.25 16 26 C 0.06 0.75 9.70 83.36 0.81 1.56 16 27 H 0.09 -0.33 8.14 -2.38 -0.02 -0.35 16 28 H 0.11 -0.76 8.09 -2.38 -0.02 -0.78 16 29 H 0.07 -0.07 8.08 -2.39 -0.02 -0.09 16 30 H 0.21 -2.32 8.06 -2.91 -0.02 -2.34 16 31 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 32 H 0.19 4.47 7.70 -2.91 -0.02 4.45 16 33 H 0.41 16.33 5.11 -92.71 -0.47 15.85 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 41 H 0.18 2.28 7.32 -2.91 -0.02 2.26 16 Total: -1.00 -87.24 352.81 3.34 -83.90 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.59 Total: 12.01 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.42 Total: 14.32 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -5.56 Total: -113.47 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.14 Total: -44.81 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -87.24 3.34 -83.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171505982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.536 kcal (2) G-P(sol) polarization free energy of solvation -87.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds