Wall clock time and date at job start Tue Mar 31 2020 11:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38217 * 119.98906 * 2 1 4 4 C 1.38441 * 119.97271 * 180.27429 * 3 2 1 5 5 F 1.35102 * 120.02606 * 179.76549 * 4 3 2 6 6 C 1.38474 * 119.94919 * 359.75313 * 4 3 2 7 7 C 1.38175 * 119.97558 * 359.97438 * 6 4 3 8 8 C 1.38222 * 119.98442 * 179.77211 * 2 1 3 9 9 C 1.50700 * 119.97620 * 359.97438 * 8 2 1 10 10 N 1.46896 * 109.47266 * 79.72282 * 9 8 2 11 11 C 1.46905 * 111.00155 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.38297 * 119.93202 * 90.00061 * 12 11 10 14 14 C 1.38101 * 120.07230 * 180.02562 * 13 12 11 15 15 C 1.38886 * 119.92536 * 359.97438 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38110 * 119.92772 * 359.48927 * 25 15 14 27 27 H 1.09000 * 109.47156 * 270.23224 * 1 2 3 28 28 H 1.09003 * 109.47182 * 30.22478 * 1 2 3 29 29 H 1.09000 * 109.47498 * 150.23019 * 1 2 3 30 30 H 1.08000 * 120.01477 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.01260 * 179.97438 * 6 4 3 32 32 H 1.08005 * 119.98685 * 179.97438 * 7 6 4 33 33 H 1.09008 * 109.46871 * 319.72385 * 9 8 2 34 34 H 1.09002 * 109.47266 * 199.72543 * 9 8 2 35 35 H 1.00900 * 111.00180 * 303.96078 * 10 9 8 36 36 H 1.09003 * 109.46647 * 59.99968 * 11 10 9 37 37 H 1.09004 * 109.46926 * 300.00194 * 11 10 9 38 38 H 1.07999 * 119.96698 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 179.97438 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07996 * 119.96227 * 180.23396 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1967 -0.0057 5 9 4.2586 2.3663 -0.0105 6 6 4.2732 -0.0033 -0.0063 7 6 3.5804 -1.1988 -0.0006 8 6 2.1977 -1.1972 0.0048 9 6 1.4434 -2.5018 0.0105 10 7 0.9838 -2.8077 -1.3507 11 6 0.2431 -4.0760 -1.3838 12 6 -0.2107 -4.3560 -2.7933 13 6 0.6025 -5.0751 -3.6501 14 6 0.1898 -5.3329 -4.9425 15 6 -1.0439 -4.8697 -5.3812 16 8 -1.4526 -5.1220 -6.6509 17 6 -0.6679 -5.9237 -7.3987 18 1 0.2794 -6.2670 -7.0102 19 6 -1.0773 -6.3075 -8.6667 20 7 -2.2315 -5.8897 -9.1399 21 14 0.0096 -7.4189 -9.7025 22 1 -0.3337 -8.8382 -9.4327 23 1 -0.2073 -7.1221 -11.1413 24 1 1.4340 -7.1799 -9.3571 25 6 -1.8560 -4.1434 -4.5201 26 6 -1.4395 -3.8929 -3.2273 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8880 -0.5173 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6579 2.1325 0.0004 31 1 5.3532 -0.0048 -0.0112 32 1 4.1192 -2.1349 -0.0015 33 1 0.5829 -2.4210 0.6749 34 1 2.0990 -3.2991 0.3605 35 1 0.4264 -2.0532 -1.7224 36 1 -0.6255 -4.0065 -0.7290 37 1 0.8909 -4.8840 -1.0437 38 1 1.5615 -5.4354 -3.3081 39 1 0.8255 -5.8942 -5.6111 40 1 -2.5177 -6.1579 -10.0271 41 1 -2.8138 -3.7780 -4.8598 42 1 -2.0723 -3.3314 -2.5561 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171769142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:42 Heat of formation + Delta-G solvation = -28.535618 kcal Electronic energy + Delta-G solvation = -24259.065300 eV Core-core repulsion = 20504.759356 eV Total energy + Delta-G solvation = -3754.305944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.10531 -39.85497 -39.05000 -37.09062 -35.49411 -33.04016 -32.37404 -31.60166 -30.17584 -29.25610 -27.57978 -25.91378 -25.06589 -23.38064 -22.61368 -21.97146 -21.14964 -20.41238 -17.98901 -17.46285 -17.03873 -16.92156 -16.27523 -15.84667 -15.31341 -14.89154 -14.67942 -14.45681 -14.45044 -14.09061 -13.80668 -13.72181 -13.51532 -13.50202 -13.32504 -12.95000 -12.68294 -12.47995 -12.25237 -12.01614 -11.81695 -11.62522 -11.48485 -11.22756 -11.21306 -10.79491 -10.69285 -10.55556 -10.43471 -9.33639 -9.18315 -8.88386 -8.78290 -8.38793 -8.17299 -7.19196 -6.45769 -4.04421 0.86383 0.96963 2.21492 2.28353 3.12573 3.13606 3.18403 3.26132 3.96436 3.98957 4.26221 4.39624 4.50504 4.63369 4.71437 4.85020 4.90374 5.09497 5.14405 5.23196 5.27807 5.31142 5.32905 5.42562 5.45222 5.48706 5.70431 5.74615 5.80629 5.83585 5.87295 5.88590 6.04118 6.20742 6.30650 6.42330 6.64203 6.69164 6.89535 6.95844 7.08749 7.19600 7.36445 7.41873 7.45436 7.82423 7.99531 9.00034 9.70026 10.72276 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.002253 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.631644 B =12425.237750 C =12838.443101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.155 4.155 4 C 0.098 3.902 5 F -0.143 7.143 6 C -0.160 4.160 7 C -0.068 4.068 8 C -0.088 4.088 9 C 0.096 3.904 10 N -0.680 5.680 11 C 0.118 3.882 12 C -0.187 4.187 13 C -0.048 4.048 14 C -0.235 4.235 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.194 4.194 26 C -0.068 4.068 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.342 0.658 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.116 0.884 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 9.301 20.110 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.051 4.051 3 C -0.174 4.174 4 C 0.078 3.922 5 F -0.121 7.121 6 C -0.179 4.179 7 C -0.087 4.087 8 C -0.089 4.089 9 C -0.033 4.033 10 N -0.313 5.313 11 C -0.010 4.010 12 C -0.188 4.188 13 C -0.066 4.066 14 C -0.255 4.255 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.213 4.213 26 C -0.087 4.087 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.162 0.838 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.134 0.866 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.350 9.089 19.563 23.131 hybrid contribution -0.014 -0.009 -0.209 0.209 sum 8.335 9.080 19.354 22.946 Atomic orbital electron populations 1.20903 0.90583 1.03480 1.02721 1.19619 0.96287 0.91758 0.97450 1.20966 0.92231 0.99204 1.05020 1.17693 0.90149 0.81285 1.03040 1.91493 1.80318 1.46342 1.93968 1.21126 1.00849 0.91273 1.04651 1.20904 0.93364 0.97613 0.96775 1.19765 0.93795 0.94408 1.00915 1.20870 0.97858 0.93649 0.90884 1.60679 1.45559 1.05535 1.19499 1.20644 0.95155 0.91319 0.93889 1.19083 0.96539 1.07454 0.95731 1.20567 0.97435 0.95902 0.92742 1.21171 0.98352 1.08686 0.97263 1.19408 0.92077 0.92649 0.85662 1.83974 1.47314 1.59129 1.17675 1.21336 1.01712 1.26717 0.97008 0.89031 1.25295 0.96849 0.97826 0.96560 1.70036 1.19450 1.42452 1.17838 0.85711 0.79436 0.79514 0.78777 1.19875 1.20256 1.19160 1.20162 1.00936 1.06771 0.93461 1.20468 0.95255 0.98374 0.94638 0.90664 0.90855 0.91131 0.84855 0.84824 0.84806 0.94207 0.90095 0.83765 0.95312 0.91010 0.87485 0.85601 0.92014 0.86631 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.22 36.00 0.33 -0.56 16 2 C -0.05 -0.47 5.86 -104.64 -0.61 -1.08 16 3 C -0.16 -1.48 9.68 -39.51 -0.38 -1.86 16 4 C 0.10 1.01 7.30 -39.42 -0.29 0.72 16 5 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 6 C -0.16 -1.50 10.03 -39.52 -0.40 -1.90 16 7 C -0.07 -0.63 9.67 -39.59 -0.38 -1.01 16 8 C -0.09 -0.85 5.39 -104.62 -0.56 -1.41 16 9 C 0.10 0.89 5.04 -4.98 -0.03 0.86 16 10 N -0.68 -7.95 6.45 -116.33 -0.75 -8.70 16 11 C 0.12 1.47 5.81 -4.97 -0.03 1.44 16 12 C -0.19 -3.05 5.40 -104.58 -0.56 -3.62 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 14 C -0.24 -5.09 9.17 -39.39 -0.36 -5.45 16 15 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 16 O -0.18 -5.07 9.76 0.05 0.00 -5.07 16 17 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 21 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.19 -4.03 9.99 -39.39 -0.39 -4.43 16 26 C -0.07 -1.17 9.69 -39.60 -0.38 -1.56 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.07 0.55 5.24 -51.93 -0.27 0.28 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.13 1.02 8.04 -52.48 -0.42 0.60 16 33 H 0.04 0.33 7.30 -51.92 -0.38 -0.05 16 34 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 35 H 0.34 4.08 6.93 -39.29 -0.27 3.80 16 36 H 0.03 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -30.71 358.94 -9.33 -40.04 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.26 Total: 6.19 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -4.50 Total: -27.28 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.01 Total: -33.23 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: 0.00 Total: -5.07 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.71 -9.33 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171769142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.500 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds