Wall clock time and date at job start Tue Mar 31 2020 10:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30191 * 126.21265 * 2 1 4 4 N 1.39803 * 110.13986 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.34008 * 179.97438 * 4 3 2 6 6 C 1.36621 * 109.31707 * 359.97438 * 4 3 2 7 7 N 1.32944 * 133.25259 * 180.32262 * 6 4 3 8 8 C 1.31183 * 121.84669 * 180.16335 * 7 6 4 9 9 C 1.40234 * 121.36686 * 359.47243 * 8 7 6 10 10 C 1.47555 * 120.41409 * 180.28322 * 9 8 7 11 11 O 1.21490 * 119.99966 * 174.89503 * 10 9 8 12 12 O 1.34729 * 119.99969 * 354.88486 * 10 9 8 13 13 C 1.45205 * 117.00018 * 184.88558 * 12 10 9 14 14 C 1.53002 * 109.47143 * 183.70730 * 13 12 10 15 15 C 1.50694 * 115.55211 * 306.33100 * 14 13 12 16 16 H 1.08002 * 119.99890 * 144.82236 * 15 14 13 17 17 C 1.37878 * 119.99932 * 324.82464 * 15 14 13 18 18 N 1.31515 * 120.00236 * 345.10510 * 17 15 14 19 19 Si 1.86801 * 119.99747 * 165.11097 * 17 15 14 20 20 H 1.48497 * 109.47443 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.46925 * 119.99868 * 19 17 15 22 22 H 1.48509 * 109.47076 * 239.99489 * 19 17 15 23 23 C 1.52996 * 117.49527 * 160.65693 * 14 13 12 24 24 C 1.53003 * 117.49396 * 91.99934 * 14 13 12 25 25 C 1.39577 * 119.16895 * 0.25490 * 9 8 7 26 26 C 1.39628 * 117.94396 * 0.02562 * 25 9 8 27 27 H 1.08992 * 109.47396 * 269.96355 * 1 2 3 28 28 H 1.09009 * 109.46520 * 29.96139 * 1 2 3 29 29 H 1.08998 * 109.46999 * 149.95702 * 1 2 3 30 30 H 1.09001 * 109.47287 * 269.99748 * 5 4 3 31 31 H 1.09003 * 109.47383 * 29.99939 * 5 4 3 32 32 H 1.09006 * 109.47309 * 150.00016 * 5 4 3 33 33 H 1.07998 * 119.31502 * 179.75302 * 8 7 6 34 34 H 1.08999 * 109.47363 * 303.71095 * 13 12 10 35 35 H 1.09001 * 109.46801 * 63.71386 * 13 12 10 36 36 H 0.96994 * 119.99842 * 185.03329 * 18 17 15 37 37 H 1.08997 * 117.50227 * 0.02562 * 23 14 13 38 38 H 1.09008 * 117.49625 * 145.02138 * 23 14 13 39 39 H 1.08993 * 117.49631 * 214.97442 * 24 14 13 40 40 H 1.08999 * 117.50115 * 359.97438 * 24 14 13 41 41 H 1.07996 * 121.02272 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0504 0.0000 4 7 3.6195 0.6634 -0.0006 5 6 4.7646 1.5770 -0.0013 6 6 3.6969 -0.7007 -0.0004 7 7 4.7151 -1.5554 0.0047 8 6 4.5289 -2.8539 0.0004 9 6 3.2400 -3.4065 0.0011 10 6 3.0549 -4.8704 0.0025 11 8 1.9390 -5.3414 0.0967 12 8 4.1233 -5.6846 -0.1010 13 6 3.8594 -7.1088 -0.2029 14 6 5.1846 -7.8733 -0.2184 15 6 6.1788 -7.4297 -1.2604 16 1 7.2360 -7.4480 -1.0405 17 6 5.7386 -7.0004 -2.4945 18 7 4.5037 -7.2461 -2.8743 19 14 6.8965 -6.0698 -3.6272 20 1 8.2201 -5.9233 -2.9702 21 1 7.0547 -6.8206 -4.8986 22 1 6.3347 -4.7251 -3.9131 23 6 5.1455 -9.3620 0.1321 24 6 5.7367 -8.3572 1.1240 25 6 2.1346 -2.5544 0.0012 26 6 2.3694 -1.1780 -0.0001 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3633 0.8904 -0.5133 29 1 -0.3633 -0.8896 -0.5145 30 1 5.0482 1.8035 -1.0291 31 1 4.4938 2.4995 0.5125 32 1 5.6040 1.1081 0.5122 33 1 5.3860 -3.5110 0.0007 34 1 3.2645 -7.4302 0.6521 35 1 3.3121 -7.3119 -1.1234 36 1 4.2155 -7.0093 -3.7696 37 1 4.1756 -9.7970 0.3734 38 1 5.8391 -10.0206 -0.3908 39 1 6.8190 -8.3551 1.2532 40 1 5.1561 -8.1305 2.0182 41 1 1.1287 -2.9476 0.0013 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174738776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:44 Heat of formation + Delta-G solvation = 28.945933 kcal Electronic energy + Delta-G solvation = -25746.391216 eV Core-core repulsion = 22014.497821 eV Total energy + Delta-G solvation = -3731.893395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.83351 -41.21932 -39.25066 -38.43398 -36.82253 -35.52464 -34.15724 -33.11168 -31.74449 -30.49182 -28.60603 -27.47666 -26.80768 -25.08073 -24.68084 -22.96847 -22.08910 -21.08468 -21.04409 -19.21627 -18.74581 -18.43325 -17.55624 -17.31903 -17.26167 -17.01341 -16.47578 -16.41825 -15.52701 -14.99239 -14.79577 -14.56730 -14.47057 -14.41063 -14.24566 -13.86285 -13.78304 -13.69792 -13.48384 -13.18958 -12.85961 -12.79285 -12.73947 -12.30004 -12.20117 -12.09646 -11.80911 -11.64637 -11.39625 -11.29020 -11.07932 -10.72559 -10.60906 -10.24595 -10.01638 -9.46898 -8.07940 -6.13037 -0.53490 -0.44098 0.96361 1.19596 1.39935 1.45678 1.47289 1.55141 1.82883 2.43283 2.55979 2.91138 3.01921 3.07446 3.25075 3.54493 3.63950 3.73804 3.87420 4.06249 4.24489 4.26402 4.32553 4.34239 4.42973 4.60350 4.61986 4.74202 4.75099 4.77584 4.82903 4.92831 4.96606 5.03611 5.08920 5.22773 5.36818 5.42819 5.56201 5.58454 5.72847 5.85505 6.22318 6.37618 6.59926 6.79179 6.90830 7.47650 8.93935 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.003873 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.739564 B = 7226.977708 C = 8017.773766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.130 3.870 3 N -0.258 5.258 4 N -0.397 5.397 5 C 0.103 3.897 6 C 0.318 3.682 7 N -0.519 5.519 8 C 0.228 3.772 9 C -0.229 4.229 10 C 0.512 3.488 11 O -0.545 6.545 12 O -0.332 6.332 13 C 0.126 3.874 14 C 0.011 3.989 15 C -0.497 4.497 16 H 0.057 0.943 17 C 0.040 3.960 18 N -0.904 5.904 19 Si 0.940 3.060 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.285 1.285 23 C -0.186 4.186 24 C -0.186 4.186 25 C 0.086 3.914 26 C -0.250 4.250 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 15.955 6.339 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.072 5.072 4 N -0.185 5.185 5 C -0.036 4.036 6 C 0.078 3.922 7 N -0.234 5.234 8 C 0.058 3.942 9 C -0.235 4.235 10 C 0.358 3.642 11 O -0.438 6.438 12 O -0.246 6.246 13 C 0.053 3.947 14 C 0.010 3.990 15 C -0.534 4.534 16 H 0.075 0.925 17 C -0.161 4.161 18 N -0.542 5.542 19 Si 0.766 3.234 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.211 1.211 23 C -0.224 4.224 24 C -0.223 4.223 25 C 0.059 3.941 26 C -0.260 4.260 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.010 17.740 6.249 19.464 hybrid contribution -0.007 -1.217 -0.849 1.484 sum -5.016 16.523 5.400 18.093 Atomic orbital electron populations 1.20571 0.81849 1.05700 1.05518 1.24202 0.98574 0.86595 0.95435 1.76672 0.86291 1.23156 1.21081 1.48421 1.05554 1.01313 1.63242 1.22132 0.83813 0.93220 1.04451 1.19560 0.90915 0.87321 0.94414 1.66838 1.32967 1.02923 1.20715 1.23246 0.96579 0.89126 0.85257 1.19834 0.96343 0.90177 1.17137 1.20997 0.82810 0.88049 0.72303 1.90731 1.26431 1.78080 1.48588 1.86522 1.35378 1.21112 1.81594 1.22546 0.97599 0.74267 1.00273 1.18993 0.93655 0.92077 0.94225 1.20649 0.92118 1.43030 0.97632 0.92472 1.25454 0.96127 0.95474 0.98998 1.69953 1.18293 1.47225 1.18731 0.85784 0.80011 0.78742 0.78854 1.18753 1.20895 1.21095 1.22968 1.01091 0.94000 1.04366 1.22989 1.00057 1.05779 0.93486 1.21277 0.99824 0.89404 0.83609 1.20499 0.94175 0.94720 1.16591 0.87535 0.88419 0.88281 0.90034 0.87228 0.88657 0.79790 0.94188 0.90124 0.93021 0.90078 0.90095 0.89655 0.89349 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.48 71.24 0.75 -0.20 16 2 C 0.13 2.86 7.44 44.81 0.33 3.20 16 3 N -0.26 -6.25 12.39 -43.67 -0.54 -6.79 16 4 N -0.40 -10.08 4.03 -366.43 -1.48 -11.55 16 5 C 0.10 1.76 11.43 127.77 1.46 3.22 16 6 C 0.32 9.50 7.96 134.17 1.07 10.57 16 7 N -0.52 -16.71 10.37 -191.92 -1.99 -18.70 16 8 C 0.23 7.63 10.76 85.28 0.92 8.55 16 9 C -0.23 -7.91 5.89 -20.01 -0.12 -8.03 16 10 C 0.51 21.31 7.88 70.28 0.55 21.86 16 11 O -0.55 -24.15 16.13 19.87 0.32 -23.83 16 12 O -0.33 -15.27 9.13 -56.39 -0.51 -15.79 16 13 C 0.13 6.09 4.66 71.98 0.34 6.43 16 14 C 0.01 0.53 2.10 -52.93 -0.11 0.42 16 15 C -0.50 -26.25 8.75 25.60 0.22 -26.02 16 16 H 0.06 3.01 7.86 -2.91 -0.02 2.99 16 17 C 0.04 2.13 5.12 84.65 0.43 2.57 16 18 N -0.90 -50.02 10.96 21.45 0.24 -49.79 16 19 Si 0.94 42.62 29.57 68.60 2.03 44.65 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 C -0.19 -7.96 9.96 30.62 0.30 -7.65 16 24 C -0.19 -7.54 9.92 30.62 0.30 -7.24 16 25 C 0.09 2.48 9.76 22.93 0.22 2.70 16 26 C -0.25 -6.84 6.33 -20.24 -0.13 -6.97 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.19 6.11 7.61 -2.91 -0.02 6.09 16 34 H 0.04 1.80 7.95 -2.39 -0.02 1.78 16 35 H 0.08 4.37 6.12 -2.39 -0.01 4.36 16 36 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.17 4.18 7.73 -2.91 -0.02 4.15 16 Total: -1.00 -66.55 359.35 5.66 -60.89 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.05 Total: 17.52 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.55 Total: 3.39 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -3.77 Total: -86.83 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.19 Total: -39.61 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.55 5.66 -60.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174738776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.834 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds