Wall clock time and date at job start Tue Mar 31 2020 10:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47224 * 239.99294 * 3 2 1 5 5 H 1.48498 * 109.47571 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47159 * 119.99741 * 3 2 1 7 7 C 1.37880 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46644 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46657 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46785 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99799 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99910 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99877 * 179.97438 * 13 12 11 16 16 C 1.39969 * 119.99889 * 185.31635 * 15 13 12 17 17 C 1.38989 * 119.99540 * 213.32748 * 16 15 13 18 18 C 1.38210 * 120.22016 * 180.02562 * 17 16 15 19 19 C 1.38029 * 120.21826 * 359.73511 * 18 17 16 20 20 C 1.39573 * 119.99260 * 0.51445 * 19 18 17 21 21 C 1.47847 * 120.10783 * 179.76644 * 20 19 18 22 22 N 1.31212 * 125.72791 * 359.72001 * 21 20 19 23 23 C 1.34154 * 108.64826 * 180.02562 * 22 21 20 24 24 C 1.34544 * 107.83796 * 0.02562 * 23 22 21 25 25 O 1.34420 * 125.72083 * 179.72606 * 21 20 19 26 26 C 1.38583 * 120.00052 * 33.34316 * 16 15 13 27 27 H 0.96999 * 119.99648 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46842 * 60.00149 * 9 7 2 29 29 H 1.09001 * 109.47652 * 299.99638 * 9 7 2 30 30 H 1.08994 * 109.46839 * 60.00518 * 10 9 7 31 31 H 1.08997 * 109.46914 * 299.99686 * 10 9 7 32 32 H 1.08997 * 109.47027 * 60.00071 * 11 10 9 33 33 H 1.09005 * 109.47196 * 300.00004 * 11 10 9 34 34 H 0.96996 * 120.00308 * 0.02562 * 12 11 10 35 35 H 0.97002 * 119.99830 * 5.32342 * 15 13 12 36 36 H 1.07994 * 119.89492 * 0.03750 * 17 16 15 37 37 H 1.07999 * 119.89024 * 179.97438 * 18 17 16 38 38 H 1.08008 * 120.00047 * 180.28116 * 19 18 17 39 39 H 1.08002 * 126.08154 * 179.97438 * 23 22 21 40 40 H 1.08003 * 126.36225 * 179.73291 * 24 23 22 41 41 H 1.08006 * 120.10836 * 359.95820 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7876 -7.5934 0.0007 15 7 2.8588 -8.3957 0.0007 16 6 2.3962 -9.7120 -0.1115 17 6 3.0666 -10.7419 0.5379 18 6 2.6141 -12.0433 0.4298 19 6 1.4903 -12.3282 -0.3193 20 6 0.8132 -11.3017 -0.9794 21 6 -0.3878 -11.6046 -1.7867 22 7 -0.9116 -12.7945 -1.9641 23 6 -1.9894 -12.6753 -2.7539 24 6 -2.1279 -11.3746 -3.0687 25 8 -1.1262 -10.7072 -2.4622 26 6 1.2700 -9.9883 -0.8704 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8539 -5.0446 -0.8903 33 1 0.8532 -5.0451 0.8897 34 1 3.3859 -5.9234 0.0016 35 1 3.8097 -8.2208 0.0786 36 1 3.9438 -10.5245 1.1290 37 1 3.1393 -12.8395 0.9363 38 1 1.1372 -13.3459 -0.3976 39 1 -2.6313 -13.4804 -3.0798 40 1 -2.8967 -10.9454 -3.6942 41 1 0.7475 -9.1892 -1.3754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179159606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:51 Heat of formation + Delta-G solvation = 14.484565 kcal Electronic energy + Delta-G solvation = -24200.743798 eV Core-core repulsion = 20468.223311 eV Total energy + Delta-G solvation = -3732.520487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.46200 -40.72605 -38.88349 -35.76284 -35.05530 -34.75192 -33.38109 -32.37483 -31.36448 -29.82765 -29.04906 -26.66035 -24.21438 -23.82236 -22.97663 -22.16193 -21.32368 -20.88980 -20.34813 -18.68372 -18.10756 -17.05697 -16.78450 -16.51926 -16.28091 -15.86014 -15.48561 -15.05500 -14.83537 -14.47188 -14.26186 -14.09755 -14.08655 -13.61703 -13.37461 -13.15567 -12.31150 -12.06351 -11.89403 -11.86042 -11.80777 -11.61824 -10.92472 -10.84966 -10.78406 -10.70163 -10.65048 -10.19706 -9.90780 -9.88157 -9.49076 -9.17363 -8.94411 -8.60767 -8.39507 -8.24263 -6.04219 -4.07624 0.39735 1.10971 1.58772 2.45040 2.48420 2.55540 3.09993 3.30099 3.35150 3.36777 3.61828 3.69646 4.16348 4.42320 4.58554 4.69329 4.77795 4.82588 4.97292 5.17455 5.18152 5.31455 5.38416 5.57610 5.60407 5.68022 5.73538 5.88577 6.02275 6.08336 6.11750 6.18082 6.23809 6.38911 6.55297 6.67293 6.72669 6.89250 6.95960 7.45399 7.60136 7.72551 7.89145 7.94097 8.34509 8.49702 8.98765 9.56595 11.07003 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019343 B = 0.002148 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.203149 B =13034.179162 C =14333.997772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.734 5.734 13 C 0.697 3.303 14 O -0.572 6.572 15 N -0.691 5.691 16 C 0.174 3.826 17 C -0.131 4.131 18 C -0.101 4.101 19 C -0.092 4.092 20 C -0.003 4.003 21 C 0.238 3.762 22 N -0.475 5.475 23 C -0.043 4.043 24 C -0.071 4.071 25 O -0.190 6.190 26 C -0.091 4.091 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.408 0.592 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.187 0.813 40 H 0.218 0.782 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.696 -26.850 -2.929 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.387 5.387 13 C 0.398 3.602 14 O -0.449 6.449 15 N -0.339 5.339 16 C 0.078 3.922 17 C -0.152 4.152 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.005 4.005 21 C 0.034 3.966 22 N -0.205 5.205 23 C -0.183 4.183 24 C -0.142 4.142 25 O -0.075 6.075 26 C -0.113 4.113 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.244 0.756 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.204 0.796 40 H 0.234 0.766 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.653 -27.290 -2.686 27.664 hybrid contribution 0.811 1.796 -0.370 2.005 sum 4.464 -25.494 -3.055 26.062 Atomic orbital electron populations 1.69958 1.06059 1.26844 1.50368 1.25035 0.94872 0.99322 0.95248 0.86632 0.79552 0.83063 0.78581 1.20246 1.21262 1.20240 1.21153 0.92943 0.90923 1.51182 0.92690 1.19025 0.93831 0.90761 0.97729 1.21903 0.99840 0.93182 1.00932 1.21605 0.91241 0.83949 1.02184 1.45421 1.10828 1.04151 1.78344 1.16029 0.85217 0.80835 0.78151 1.90965 1.13773 1.83642 1.56491 1.42686 1.10108 1.03554 1.77517 1.17252 0.95627 0.83251 0.96071 1.21071 1.01879 0.92424 0.99831 1.20838 0.96146 0.96052 0.98895 1.21088 0.94855 0.98953 0.96340 1.17078 0.91090 0.93885 0.98465 1.23834 0.94725 0.81901 0.96097 1.70618 1.09599 1.23127 1.17110 1.23367 0.97663 0.96915 1.00363 1.25222 0.93902 0.92728 1.02319 1.84588 1.33416 1.39401 1.50140 1.21277 0.96664 0.95714 0.97635 0.92835 0.96224 0.96214 0.92664 0.92665 0.91654 0.91663 0.77006 0.75621 0.85078 0.84666 0.84455 0.79641 0.76576 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 12 N -0.73 -9.88 5.56 -65.22 -0.36 -10.24 16 13 C 0.70 10.10 8.30 -86.92 -0.72 9.38 16 14 O -0.57 -10.71 14.03 5.29 0.07 -10.63 16 15 N -0.69 -7.24 5.35 -14.26 -0.08 -7.32 16 16 C 0.17 1.94 6.27 -83.74 -0.53 1.41 16 17 C -0.13 -1.09 9.95 -39.31 -0.39 -1.48 16 18 C -0.10 -0.79 10.02 -39.67 -0.40 -1.18 16 19 C -0.09 -0.91 9.68 -39.16 -0.38 -1.29 16 20 C 0.00 -0.04 5.87 -105.01 -0.62 -0.66 16 21 C 0.24 3.13 7.90 -13.89 -0.11 3.02 16 22 N -0.48 -5.91 10.91 -11.72 -0.13 -6.04 16 23 C -0.04 -0.41 11.87 -17.84 -0.21 -0.63 16 24 C -0.07 -0.66 12.17 29.43 0.36 -0.30 16 25 O -0.19 -2.49 10.52 4.08 0.04 -2.44 16 26 C -0.09 -1.20 8.32 -38.99 -0.32 -1.52 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 4.04 8.49 -40.82 -0.35 3.70 16 35 H 0.41 2.72 8.83 -40.82 -0.36 2.36 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.14 1.23 7.83 -52.48 -0.41 0.82 16 39 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.22 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.15 2.27 6.25 -52.48 -0.33 1.95 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -35.34 359.90 -8.56 -43.90 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.22 Total: 3.15 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.03 Total: -6.18 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.17 Total: -49.49 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.12 Total: -13.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.34 -8.56 -43.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179159606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.384 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds