Wall clock time and date at job start Tue Mar 31 2020 10:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99806 * 2 1 4 4 H 1.48500 * 109.47224 * 239.99294 * 3 2 1 5 5 H 1.48498 * 109.47571 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47159 * 119.99741 * 3 2 1 7 7 C 1.37880 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46644 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46657 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46785 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99799 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99910 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99877 * 179.97438 * 13 12 11 16 16 C 1.39969 * 119.99889 * 185.31635 * 15 13 12 17 17 C 1.38989 * 119.99540 * 213.32748 * 16 15 13 18 18 C 1.38210 * 120.22016 * 180.02562 * 17 16 15 19 19 C 1.38029 * 120.21826 * 359.73511 * 18 17 16 20 20 C 1.39573 * 119.99260 * 0.51445 * 19 18 17 21 21 C 1.47847 * 120.10783 * 179.76644 * 20 19 18 22 22 N 1.31212 * 125.72791 * 359.72001 * 21 20 19 23 23 C 1.34154 * 108.64826 * 180.02562 * 22 21 20 24 24 C 1.34544 * 107.83796 * 0.02562 * 23 22 21 25 25 O 1.34420 * 125.72083 * 179.72606 * 21 20 19 26 26 C 1.38583 * 120.00052 * 33.34316 * 16 15 13 27 27 H 0.96999 * 119.99648 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46842 * 60.00149 * 9 7 2 29 29 H 1.09001 * 109.47652 * 299.99638 * 9 7 2 30 30 H 1.08994 * 109.46839 * 60.00518 * 10 9 7 31 31 H 1.08997 * 109.46914 * 299.99686 * 10 9 7 32 32 H 1.08997 * 109.47027 * 60.00071 * 11 10 9 33 33 H 1.09005 * 109.47196 * 300.00004 * 11 10 9 34 34 H 0.96996 * 120.00308 * 0.02562 * 12 11 10 35 35 H 0.97002 * 119.99830 * 5.32342 * 15 13 12 36 36 H 1.07994 * 119.89492 * 0.03750 * 17 16 15 37 37 H 1.07999 * 119.89024 * 179.97438 * 18 17 16 38 38 H 1.08008 * 120.00047 * 180.28116 * 19 18 17 39 39 H 1.08002 * 126.08154 * 179.97438 * 23 22 21 40 40 H 1.08003 * 126.36225 * 179.73291 * 24 23 22 41 41 H 1.08006 * 120.10836 * 359.95820 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7876 -7.5934 0.0007 15 7 2.8588 -8.3957 0.0007 16 6 2.3962 -9.7120 -0.1115 17 6 3.0666 -10.7419 0.5379 18 6 2.6141 -12.0433 0.4298 19 6 1.4903 -12.3282 -0.3193 20 6 0.8132 -11.3017 -0.9794 21 6 -0.3878 -11.6046 -1.7867 22 7 -0.9116 -12.7945 -1.9641 23 6 -1.9894 -12.6753 -2.7539 24 6 -2.1279 -11.3746 -3.0687 25 8 -1.1262 -10.7072 -2.4622 26 6 1.2700 -9.9883 -0.8704 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8719 -3.6043 -0.8895 32 1 0.8539 -5.0446 -0.8903 33 1 0.8532 -5.0451 0.8897 34 1 3.3859 -5.9234 0.0016 35 1 3.8097 -8.2208 0.0786 36 1 3.9438 -10.5245 1.1290 37 1 3.1393 -12.8395 0.9363 38 1 1.1372 -13.3459 -0.3976 39 1 -2.6313 -13.4804 -3.0798 40 1 -2.8967 -10.9454 -3.6942 41 1 0.7475 -9.1892 -1.3754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179159606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:51 Heat of formation + Delta-G solvation = -11.917825 kcal Electronic energy + Delta-G solvation = -24201.888691 eV Core-core repulsion = 20468.223311 eV Total energy + Delta-G solvation = -3733.665381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.30857 -41.74732 -39.81049 -37.13458 -36.08006 -35.70912 -35.22526 -33.23233 -32.97500 -30.79688 -29.88384 -28.39282 -25.29014 -25.00997 -24.10803 -23.10932 -22.35026 -22.21133 -21.60817 -19.63545 -19.15533 -18.51137 -17.83209 -17.67897 -17.28094 -16.92967 -16.60504 -16.38082 -16.09651 -15.77945 -15.56745 -15.24524 -14.92584 -14.48365 -14.26312 -14.12971 -14.03078 -13.75395 -13.54259 -12.79934 -12.72658 -12.64438 -12.55308 -12.49455 -12.41347 -11.76923 -11.70634 -11.67347 -11.55979 -11.29838 -11.15143 -10.64289 -10.54651 -10.19779 -9.44329 -9.06019 -8.19331 -6.30896 -0.40702 0.29480 0.81599 1.41665 1.44902 1.48547 1.53039 1.68668 1.71034 2.00156 2.42003 2.81519 2.88338 3.14444 3.20663 3.88445 4.01342 4.04099 4.12163 4.17350 4.21798 4.22496 4.41438 4.45950 4.54692 4.62993 4.85589 4.89450 4.94537 4.96793 5.13220 5.17041 5.25093 5.32495 5.37983 5.43482 5.47161 5.52542 5.70893 5.84322 5.91078 5.92717 6.22271 6.61369 6.86344 6.95028 7.38624 7.41089 8.92617 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019343 B = 0.002148 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.203149 B =13034.179162 C =14333.997772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.720 5.720 13 C 0.696 3.304 14 O -0.620 6.620 15 N -0.669 5.669 16 C 0.155 3.845 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.093 4.093 20 C -0.023 4.023 21 C 0.208 3.792 22 N -0.489 5.489 23 C -0.052 4.052 24 C -0.071 4.071 25 O -0.218 6.218 26 C -0.117 4.117 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.416 0.584 35 H 0.429 0.571 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.145 0.855 39 H 0.221 0.779 40 H 0.256 0.744 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -28.147 -2.345 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.376 5.376 13 C 0.396 3.604 14 O -0.499 6.499 15 N -0.319 5.319 16 C 0.060 3.940 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.025 4.025 21 C 0.006 3.994 22 N -0.219 5.219 23 C -0.192 4.192 24 C -0.141 4.141 25 O -0.104 6.104 26 C -0.139 4.139 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.253 0.747 35 H 0.269 0.731 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.163 0.837 39 H 0.237 0.763 40 H 0.271 0.729 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.537 -28.617 -2.104 29.430 hybrid contribution -0.129 2.072 -0.583 2.157 sum 6.408 -26.545 -2.687 27.439 Atomic orbital electron populations 1.70113 1.07976 1.27848 1.51671 1.26045 0.95751 1.03622 0.94827 0.85461 0.78166 0.77880 0.79295 1.19005 1.21303 1.18944 1.21655 0.93796 0.91940 1.50467 0.91373 1.18946 0.94484 0.92998 0.95069 1.21592 0.98430 0.91426 1.02350 1.21136 0.91316 0.84486 1.00660 1.45002 1.11246 1.03096 1.78219 1.16162 0.84987 0.81491 0.77762 1.90949 1.16197 1.84367 1.58432 1.42364 1.10582 1.02561 1.76421 1.17484 0.95783 0.83913 0.96825 1.21461 1.02053 0.91525 0.98456 1.21322 0.94916 0.96951 0.97360 1.21324 0.95326 0.98604 0.96068 1.17300 0.91545 0.94232 0.99410 1.24209 0.95688 0.82230 0.97273 1.70594 1.10597 1.22889 1.17789 1.23993 0.97320 0.98084 0.99770 1.26094 0.93421 0.92917 1.01647 1.84588 1.34498 1.40560 1.50742 1.21081 0.98100 0.95336 0.99391 0.92839 0.99037 0.98960 0.91042 0.91194 0.93428 0.93279 0.74680 0.73118 0.81276 0.80590 0.83747 0.76253 0.72856 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.73 5.27 30.60 0.16 -3.57 16 11 C 0.15 5.16 5.67 86.38 0.49 5.65 16 12 N -0.72 -18.94 5.56 -478.52 -2.66 -21.60 16 13 C 0.70 20.29 8.30 179.05 1.49 21.78 16 14 O -0.62 -24.47 14.03 -3.99 -0.06 -24.53 16 15 N -0.67 -13.27 5.35 -317.28 -1.70 -14.96 16 16 C 0.16 3.34 6.27 38.10 0.24 3.58 16 17 C -0.11 -1.53 9.95 22.44 0.22 -1.31 16 18 C -0.09 -1.08 10.02 22.21 0.22 -0.86 16 19 C -0.09 -1.74 9.68 22.54 0.22 -1.52 16 20 C -0.02 -0.59 5.87 -20.11 -0.12 -0.71 16 21 C 0.21 5.83 7.90 87.33 0.69 6.52 16 22 N -0.49 -12.38 10.91 -305.08 -3.33 -15.71 16 23 C -0.05 -0.98 11.87 83.49 0.99 0.01 16 24 C -0.07 -1.34 12.17 66.97 0.82 -0.52 16 25 O -0.22 -6.14 10.52 -8.32 -0.09 -6.22 16 26 C -0.12 -3.27 8.32 22.65 0.19 -3.08 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.42 7.59 8.49 -92.71 -0.79 6.80 16 35 H 0.43 4.57 8.83 -92.71 -0.82 3.75 16 36 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 37 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.14 2.43 7.83 -2.91 -0.02 2.40 16 39 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 3.84 6.25 -2.91 -0.02 3.83 16 Total: -1.00 -81.97 359.90 0.40 -81.56 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.53 Total: 14.97 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.45 Total: -2.13 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -7.40 Total: -109.16 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.14 Total: -30.75 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -81.97 0.40 -81.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179159606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.647 kcal (2) G-P(sol) polarization free energy of solvation -81.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds