Wall clock time and date at job start Tue Mar 31 2020 10:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86794 * 119.99806 * 2 1
4 4 H 1.48500 * 109.47224 * 239.99294 * 3 2 1
5 5 H 1.48498 * 109.47571 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47159 * 119.99741 * 3 2 1
7 7 C 1.37880 * 119.99641 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99507 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00064 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.46644 * 179.97438 * 9 7 2
11 11 C 1.53004 * 109.46657 * 180.02562 * 10 9 7
12 12 N 1.46503 * 109.46785 * 180.02562 * 11 10 9
13 13 C 1.34776 * 119.99799 * 179.97438 * 12 11 10
14 14 O 1.21586 * 119.99910 * 359.97438 * 13 12 11
15 15 N 1.34777 * 119.99877 * 179.97438 * 13 12 11
16 16 C 1.39969 * 119.99889 * 185.31635 * 15 13 12
17 17 C 1.38989 * 119.99540 * 213.32748 * 16 15 13
18 18 C 1.38210 * 120.22016 * 180.02562 * 17 16 15
19 19 C 1.38029 * 120.21826 * 359.73511 * 18 17 16
20 20 C 1.39573 * 119.99260 * 0.51445 * 19 18 17
21 21 C 1.47847 * 120.10783 * 179.76644 * 20 19 18
22 22 N 1.31212 * 125.72791 * 359.72001 * 21 20 19
23 23 C 1.34154 * 108.64826 * 180.02562 * 22 21 20
24 24 C 1.34544 * 107.83796 * 0.02562 * 23 22 21
25 25 O 1.34420 * 125.72083 * 179.72606 * 21 20 19
26 26 C 1.38583 * 120.00052 * 33.34316 * 16 15 13
27 27 H 0.96999 * 119.99648 * 0.02562 * 1 2 3
28 28 H 1.08997 * 109.46842 * 60.00149 * 9 7 2
29 29 H 1.09001 * 109.47652 * 299.99638 * 9 7 2
30 30 H 1.08994 * 109.46839 * 60.00518 * 10 9 7
31 31 H 1.08997 * 109.46914 * 299.99686 * 10 9 7
32 32 H 1.08997 * 109.47027 * 60.00071 * 11 10 9
33 33 H 1.09005 * 109.47196 * 300.00004 * 11 10 9
34 34 H 0.96996 * 120.00308 * 0.02562 * 12 11 10
35 35 H 0.97002 * 119.99830 * 5.32342 * 15 13 12
36 36 H 1.07994 * 119.89492 * 0.03750 * 17 16 15
37 37 H 1.07999 * 119.89024 * 179.97438 * 18 17 16
38 38 H 1.08008 * 120.00047 * 180.28116 * 19 18 17
39 39 H 1.08002 * 126.08154 * 179.97438 * 23 22 21
40 40 H 1.08003 * 126.36225 * 179.73291 * 24 23 22
41 41 H 1.08006 * 120.10836 * 359.95820 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1030 1.6964 -1.2124
5 1 1.2842 2.7465 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4802 -4.9871 -0.0001
12 7 2.4323 -6.1006 0.0005
13 6 1.9830 -7.3713 0.0006
14 8 0.7876 -7.5934 0.0007
15 7 2.8588 -8.3957 0.0007
16 6 2.3962 -9.7120 -0.1115
17 6 3.0666 -10.7419 0.5379
18 6 2.6141 -12.0433 0.4298
19 6 1.4903 -12.3282 -0.3193
20 6 0.8132 -11.3017 -0.9794
21 6 -0.3878 -11.6046 -1.7867
22 7 -0.9116 -12.7945 -1.9641
23 6 -1.9894 -12.6753 -2.7539
24 6 -2.1279 -11.3746 -3.0687
25 8 -1.1262 -10.7072 -2.4622
26 6 1.2700 -9.9883 -0.8704
27 1 -0.4849 0.8401 -0.0004
28 1 0.6247 -2.5570 -0.8897
29 1 0.6240 -2.5568 0.8903
30 1 2.8719 -3.6043 0.8905
31 1 2.8719 -3.6043 -0.8895
32 1 0.8539 -5.0446 -0.8903
33 1 0.8532 -5.0451 0.8897
34 1 3.3859 -5.9234 0.0016
35 1 3.8097 -8.2208 0.0786
36 1 3.9438 -10.5245 1.1290
37 1 3.1393 -12.8395 0.9363
38 1 1.1372 -13.3459 -0.3976
39 1 -2.6313 -13.4804 -3.0798
40 1 -2.8967 -10.9454 -3.6942
41 1 0.7475 -9.1892 -1.3754
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000179159606.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:51
Heat of formation + Delta-G solvation = -11.917825 kcal
Electronic energy + Delta-G solvation = -24201.888691 eV
Core-core repulsion = 20468.223311 eV
Total energy + Delta-G solvation = -3733.665381 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-44.30857 -41.74732 -39.81049 -37.13458 -36.08006 -35.70912 -35.22526 -33.23233
-32.97500 -30.79688 -29.88384 -28.39282 -25.29014 -25.00997 -24.10803 -23.10932
-22.35026 -22.21133 -21.60817 -19.63545 -19.15533 -18.51137 -17.83209 -17.67897
-17.28094 -16.92967 -16.60504 -16.38082 -16.09651 -15.77945 -15.56745 -15.24524
-14.92584 -14.48365 -14.26312 -14.12971 -14.03078 -13.75395 -13.54259 -12.79934
-12.72658 -12.64438 -12.55308 -12.49455 -12.41347 -11.76923 -11.70634 -11.67347
-11.55979 -11.29838 -11.15143 -10.64289 -10.54651 -10.19779 -9.44329 -9.06019
-8.19331 -6.30896 -0.40702 0.29480 0.81599 1.41665 1.44902 1.48547
1.53039 1.68668 1.71034 2.00156 2.42003 2.81519 2.88338 3.14444
3.20663 3.88445 4.01342 4.04099 4.12163 4.17350 4.21798 4.22496
4.41438 4.45950 4.54692 4.62993 4.85589 4.89450 4.94537 4.96793
5.13220 5.17041 5.25093 5.32495 5.37983 5.43482 5.47161 5.52542
5.70893 5.84322 5.91078 5.92717 6.22271 6.61369 6.86344 6.95028
7.38624 7.41089 8.92617
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.019343 B = 0.002148 C = 0.001953
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1447.203149 B =13034.179162 C =14333.997772
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.005 4.005
3 Si 0.968 3.032
4 H -0.265 1.265
5 H -0.287 1.287
6 H -0.265 1.265
7 C -0.541 4.541
8 H 0.068 0.932
9 C 0.023 3.977
10 C -0.100 4.100
11 C 0.149 3.851
12 N -0.720 5.720
13 C 0.696 3.304
14 O -0.620 6.620
15 N -0.669 5.669
16 C 0.155 3.845
17 C -0.114 4.114
18 C -0.087 4.087
19 C -0.093 4.093
20 C -0.023 4.023
21 C 0.208 3.792
22 N -0.489 5.489
23 C -0.052 4.052
24 C -0.071 4.071
25 O -0.218 6.218
26 C -0.117 4.117
27 H 0.263 0.737
28 H -0.009 1.009
29 H -0.008 1.008
30 H 0.071 0.929
31 H 0.069 0.931
32 H 0.047 0.953
33 H 0.049 0.951
34 H 0.416 0.584
35 H 0.429 0.571
36 H 0.170 0.830
37 H 0.177 0.823
38 H 0.145 0.855
39 H 0.221 0.779
40 H 0.256 0.744
41 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.495 -28.147 -2.345 29.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.202 4.202
3 Si 0.792 3.208
4 H -0.190 1.190
5 H -0.213 1.213
6 H -0.189 1.189
7 C -0.579 4.579
8 H 0.086 0.914
9 C -0.015 4.015
10 C -0.138 4.138
11 C 0.024 3.976
12 N -0.376 5.376
13 C 0.396 3.604
14 O -0.499 6.499
15 N -0.319 5.319
16 C 0.060 3.940
17 C -0.135 4.135
18 C -0.105 4.105
19 C -0.113 4.113
20 C -0.025 4.025
21 C 0.006 3.994
22 N -0.219 5.219
23 C -0.192 4.192
24 C -0.141 4.141
25 O -0.104 6.104
26 C -0.139 4.139
27 H 0.072 0.928
28 H 0.010 0.990
29 H 0.010 0.990
30 H 0.090 0.910
31 H 0.088 0.912
32 H 0.066 0.934
33 H 0.067 0.933
34 H 0.253 0.747
35 H 0.269 0.731
36 H 0.187 0.813
37 H 0.194 0.806
38 H 0.163 0.837
39 H 0.237 0.763
40 H 0.271 0.729
41 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 6.537 -28.617 -2.104 29.430
hybrid contribution -0.129 2.072 -0.583 2.157
sum 6.408 -26.545 -2.687 27.439
Atomic orbital electron populations
1.70113 1.07976 1.27848 1.51671 1.26045 0.95751 1.03622 0.94827
0.85461 0.78166 0.77880 0.79295 1.19005 1.21303 1.18944 1.21655
0.93796 0.91940 1.50467 0.91373 1.18946 0.94484 0.92998 0.95069
1.21592 0.98430 0.91426 1.02350 1.21136 0.91316 0.84486 1.00660
1.45002 1.11246 1.03096 1.78219 1.16162 0.84987 0.81491 0.77762
1.90949 1.16197 1.84367 1.58432 1.42364 1.10582 1.02561 1.76421
1.17484 0.95783 0.83913 0.96825 1.21461 1.02053 0.91525 0.98456
1.21322 0.94916 0.96951 0.97360 1.21324 0.95326 0.98604 0.96068
1.17300 0.91545 0.94232 0.99410 1.24209 0.95688 0.82230 0.97273
1.70594 1.10597 1.22889 1.17789 1.23993 0.97320 0.98084 0.99770
1.26094 0.93421 0.92917 1.01647 1.84588 1.34498 1.40560 1.50742
1.21081 0.98100 0.95336 0.99391 0.92839 0.99037 0.98960 0.91042
0.91194 0.93428 0.93279 0.74680 0.73118 0.81276 0.80590 0.83747
0.76253 0.72856 0.87158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16
2 C 0.00 -0.28 5.46 84.65 0.46 0.19 16
3 Si 0.97 43.48 29.54 68.60 2.03 45.51 16
4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16
6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16
7 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16
8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16
9 C 0.02 1.17 4.97 29.85 0.15 1.32 16
10 C -0.10 -3.73 5.27 30.60 0.16 -3.57 16
11 C 0.15 5.16 5.67 86.38 0.49 5.65 16
12 N -0.72 -18.94 5.56 -478.52 -2.66 -21.60 16
13 C 0.70 20.29 8.30 179.05 1.49 21.78 16
14 O -0.62 -24.47 14.03 -3.99 -0.06 -24.53 16
15 N -0.67 -13.27 5.35 -317.28 -1.70 -14.96 16
16 C 0.16 3.34 6.27 38.10 0.24 3.58 16
17 C -0.11 -1.53 9.95 22.44 0.22 -1.31 16
18 C -0.09 -1.08 10.02 22.21 0.22 -0.86 16
19 C -0.09 -1.74 9.68 22.54 0.22 -1.52 16
20 C -0.02 -0.59 5.87 -20.11 -0.12 -0.71 16
21 C 0.21 5.83 7.90 87.33 0.69 6.52 16
22 N -0.49 -12.38 10.91 -305.08 -3.33 -15.71 16
23 C -0.05 -0.98 11.87 83.49 0.99 0.01 16
24 C -0.07 -1.34 12.17 66.97 0.82 -0.52 16
25 O -0.22 -6.14 10.52 -8.32 -0.09 -6.22 16
26 C -0.12 -3.27 8.32 22.65 0.19 -3.08 16
27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16
28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16
29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16
30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16
31 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16
34 H 0.42 7.59 8.49 -92.71 -0.79 6.80 16
35 H 0.43 4.57 8.83 -92.71 -0.82 3.75 16
36 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16
37 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16
38 H 0.14 2.43 7.83 -2.91 -0.02 2.40 16
39 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16
40 H 0.26 2.25 8.06 -2.91 -0.02 2.23 16
41 H 0.11 3.84 6.25 -2.91 -0.02 3.83 16
Total: -1.00 -81.97 359.90 0.40 -81.56
By element:
Atomic # 1 Polarization: 15.50 SS G_CDS: -0.53 Total: 14.97 kcal
Atomic # 6 Polarization: -8.58 SS G_CDS: 6.45 Total: -2.13 kcal
Atomic # 7 Polarization: -101.76 SS G_CDS: -7.40 Total: -109.16 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: -0.14 Total: -30.75 kcal
Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal
Total: -81.97 0.40 -81.56 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000179159606.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.647 kcal
(2) G-P(sol) polarization free energy of solvation -81.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.918 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds