Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 119.97452 * 2 1 4 4 C 1.38231 * 120.15865 * 180.02562 * 3 2 1 5 5 C 1.38200 * 120.11179 * 359.97438 * 4 3 2 6 6 C 1.38786 * 119.94691 * 0.02562 * 5 4 3 7 7 N 1.39844 * 120.07559 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00324 * 0.02562 * 7 6 5 9 9 H 1.09002 * 109.47084 * 34.99647 * 8 7 6 10 10 C 1.53002 * 109.47026 * 275.00063 * 8 7 6 11 11 C 1.50694 * 109.47329 * 154.99821 * 8 7 6 12 12 C 1.38304 * 119.93130 * 39.72624 * 11 8 7 13 13 C 1.38102 * 120.06676 * 179.72432 * 12 11 8 14 14 C 1.38876 * 119.93202 * 0.54997 * 13 12 11 15 15 O 1.35748 * 120.07151 * 179.74644 * 14 13 12 16 16 C 1.34830 * 117.00323 * 174.43979 * 15 14 13 17 17 H 1.08000 * 120.00053 * 5.05744 * 16 15 14 18 18 C 1.38660 * 120.00231 * 185.05463 * 16 15 14 19 19 N 1.31551 * 119.99642 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99578 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47248 * 90.00205 * 20 18 16 22 22 H 1.48499 * 109.46504 * 209.99506 * 20 18 16 23 23 H 1.48498 * 109.47479 * 329.99683 * 20 18 16 24 24 C 1.38880 * 119.86456 * 359.72672 * 14 13 12 25 25 C 1.38107 * 119.92842 * 359.97438 * 24 14 13 26 26 C 1.38231 * 119.97311 * 180.27247 * 2 1 3 27 27 F 1.35104 * 120.05887 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47015 * 89.99800 * 1 2 3 29 29 H 1.08990 * 109.47266 * 210.00071 * 1 2 3 30 30 H 1.08999 * 109.46769 * 330.00500 * 1 2 3 31 31 H 1.07993 * 119.92157 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.94061 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.02234 * 179.97438 * 5 4 3 34 34 H 0.97001 * 119.99865 * 180.27386 * 7 6 5 35 35 H 1.09000 * 109.47364 * 59.99586 * 10 8 7 36 36 H 1.08996 * 109.46778 * 179.97438 * 10 8 7 37 37 H 1.09002 * 109.46849 * 299.99728 * 10 8 7 38 38 H 1.07992 * 119.96480 * 0.02562 * 12 11 8 39 39 H 1.07999 * 120.03036 * 180.27286 * 13 12 11 40 40 H 0.97008 * 119.99326 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.03856 * 179.97438 * 24 14 13 42 42 H 1.07996 * 119.96574 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1983 0.0000 4 6 3.5805 1.2028 -0.0005 5 6 4.2777 0.0095 -0.0005 6 6 3.5888 -1.1954 -0.0005 7 7 4.2916 -2.4044 -0.0011 8 6 5.7566 -2.4002 -0.0011 9 1 6.1175 -1.5576 0.5887 10 6 6.2662 -2.2724 -1.4381 11 6 6.2626 -3.6866 0.5988 12 6 5.6270 -4.8802 0.3089 13 6 6.0919 -6.0616 0.8526 14 6 7.1918 -6.0487 1.7003 15 8 7.6480 -7.2075 2.2404 16 6 8.7859 -7.1411 2.9605 17 1 9.2470 -6.1840 3.1547 18 6 9.3642 -8.3016 3.4519 19 7 10.4748 -8.2367 4.1540 20 14 8.5671 -9.9571 3.1154 21 1 9.1072 -10.5189 1.8514 22 1 8.8629 -10.8856 4.2359 23 1 7.0975 -9.7830 2.9917 24 6 7.8244 -4.8477 1.9941 25 6 7.3586 -3.6705 1.4423 26 6 2.1976 -1.1974 -0.0057 27 9 1.5228 -2.3678 -0.0118 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6565 2.1326 -0.0004 32 1 4.1165 2.1403 -0.0010 33 1 5.3576 0.0147 -0.0014 34 1 3.8090 -3.2458 -0.0051 35 1 5.9002 -1.3419 -1.8720 36 1 7.3562 -2.2688 -1.4380 37 1 5.9053 -3.1150 -2.0278 38 1 4.7693 -4.8891 -0.3472 39 1 5.5977 -6.9939 0.6223 40 1 10.8795 -9.0487 4.4975 41 1 8.6798 -4.8344 2.6533 42 1 7.8503 -2.7364 1.6700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179932365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = -25.466030 kcal Electronic energy + Delta-G solvation = -24913.716763 eV Core-core repulsion = 21159.543926 eV Total energy + Delta-G solvation = -3754.172837 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.80304 -39.79717 -39.15420 -37.58616 -35.69432 -32.76217 -32.36638 -31.60010 -30.41624 -28.46876 -28.24034 -27.04789 -25.42491 -23.22680 -22.64319 -22.04864 -21.33038 -19.90776 -18.09175 -17.87274 -17.42351 -17.07718 -16.23234 -15.74670 -15.30709 -15.01235 -14.66806 -14.50838 -14.09406 -13.87716 -13.82974 -13.65865 -13.54774 -13.30448 -13.17950 -12.86957 -12.59982 -12.53473 -12.37439 -12.24827 -12.11261 -11.73506 -11.69849 -11.32143 -11.08772 -10.83174 -10.80034 -10.68462 -10.21025 -10.15156 -9.47910 -8.93839 -8.74334 -8.39275 -7.48249 -7.43519 -6.48936 -4.15834 1.10157 1.35887 2.00290 2.03419 3.17290 3.21109 3.33014 3.35675 3.56895 4.17644 4.22894 4.35527 4.56862 4.70783 4.75524 4.91154 5.02230 5.05919 5.11137 5.19919 5.23695 5.35904 5.37967 5.48779 5.53889 5.58225 5.70806 5.76654 5.82683 5.89912 6.01966 6.08084 6.14309 6.19978 6.26088 6.39683 6.41859 6.62374 6.69632 6.89386 7.03755 7.16952 7.27922 7.48828 7.62902 7.71116 7.95141 8.85879 9.46913 10.58372 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.002556 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.370838 B =10952.788340 C =11474.744817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.164 4.164 4 C -0.075 4.075 5 C -0.186 4.186 6 C 0.204 3.796 7 N -0.732 5.732 8 C 0.205 3.795 9 H 0.080 0.920 10 C -0.161 4.161 11 C -0.187 4.187 12 C -0.068 4.068 13 C -0.189 4.189 14 C 0.162 3.838 15 O -0.214 6.214 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.876 5.876 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.218 4.218 25 C -0.060 4.060 26 C 0.009 3.991 27 F -0.144 7.144 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.403 0.597 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.280 0.720 41 H 0.135 0.865 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 17.167 -9.746 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.093 4.093 5 C -0.209 4.209 6 C 0.098 3.902 7 N -0.360 5.360 8 C 0.100 3.900 9 H 0.098 0.902 10 C -0.220 4.220 11 C -0.188 4.188 12 C -0.087 4.087 13 C -0.208 4.208 14 C 0.110 3.890 15 O -0.119 6.119 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.514 5.514 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.237 4.237 25 C -0.079 4.079 26 C -0.015 4.015 27 F -0.123 7.123 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.239 0.761 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.976 16.741 -9.608 23.831 hybrid contribution -0.291 -1.268 0.036 1.301 sum -14.267 15.474 -9.573 23.122 Atomic orbital electron populations 1.20724 0.90580 1.03143 1.02612 1.19687 0.96440 0.91587 0.99652 1.20608 0.94043 0.96553 1.07213 1.20918 0.93971 0.97472 0.96987 1.20601 1.00099 0.90265 1.09911 1.17875 0.89170 0.88104 0.95050 1.45039 1.05612 1.04932 1.80428 1.19587 0.78611 0.96104 0.95682 0.90176 1.22273 1.01543 1.01828 0.96360 1.19261 1.00728 0.93581 1.05271 1.20321 0.98282 0.91515 0.98558 1.20176 0.99503 0.98360 1.02798 1.19139 0.92666 0.86167 0.91068 1.83574 1.39974 1.28366 1.59965 1.20777 0.98711 0.97208 1.29987 0.87544 1.24481 0.95039 0.99122 0.95308 1.69644 1.17630 1.30301 1.33807 0.86176 0.80893 0.81675 0.78145 1.19820 1.20692 1.18345 1.21268 1.04329 0.91937 1.06171 1.20584 0.94981 0.97317 0.94977 1.16964 0.87963 0.81517 1.15066 1.91417 1.80005 1.45958 1.94912 0.90912 0.91299 0.91057 0.85799 0.85695 0.85107 0.76069 0.92630 0.91445 0.92251 0.87252 0.86401 0.90939 0.84726 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.83 36.01 0.35 -0.58 16 2 C -0.07 -0.76 5.88 -104.59 -0.62 -1.37 16 3 C -0.16 -1.50 9.70 -39.55 -0.38 -1.88 16 4 C -0.07 -0.68 10.04 -39.60 -0.40 -1.07 16 5 C -0.19 -1.96 8.85 -39.39 -0.35 -2.31 16 6 C 0.20 2.50 6.65 -83.67 -0.56 1.94 16 7 N -0.73 -9.17 5.20 -53.22 -0.28 -9.45 16 8 C 0.20 2.54 2.47 -69.08 -0.17 2.36 16 9 H 0.08 0.94 6.35 -51.93 -0.33 0.61 16 10 C -0.16 -1.79 9.41 37.16 0.35 -1.44 16 11 C -0.19 -2.89 4.96 -104.58 -0.52 -3.41 16 12 C -0.07 -1.10 9.05 -39.61 -0.36 -1.46 16 13 C -0.19 -3.62 9.99 -39.40 -0.39 -4.01 16 14 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 15 O -0.21 -5.54 8.59 0.05 0.00 -5.54 16 16 C -0.39 -10.82 9.95 30.89 0.31 -10.51 16 17 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -24.93 13.96 55.48 0.77 -24.16 16 20 Si 0.91 21.37 28.62 -169.99 -4.86 16.51 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.22 -4.50 9.17 -39.39 -0.36 -4.86 16 25 C -0.06 -1.02 9.66 -39.60 -0.38 -1.40 16 26 C 0.01 0.11 7.25 -39.26 -0.28 -0.18 16 27 F -0.14 -1.92 15.85 2.25 0.04 -1.88 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.60 7.64 -51.93 -0.40 0.20 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.24 6.12 -52.49 -0.32 0.92 16 34 H 0.40 5.18 6.34 -40.82 -0.26 4.92 16 35 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.49 6.89 -52.49 -0.36 1.13 16 39 H 0.12 2.12 8.06 -52.49 -0.42 1.69 16 40 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.14 2.93 5.64 -52.49 -0.30 2.64 16 42 H 0.11 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -29.00 353.69 -8.28 -37.28 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.16 Total: 7.03 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -4.12 Total: -25.13 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.50 Total: -33.60 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.00 -8.28 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179932365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.818 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds