Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 119.97452 * 2 1 4 4 C 1.38231 * 120.15865 * 180.02562 * 3 2 1 5 5 C 1.38200 * 120.11179 * 359.97438 * 4 3 2 6 6 C 1.38786 * 119.94691 * 0.02562 * 5 4 3 7 7 N 1.39844 * 120.07559 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00324 * 0.02562 * 7 6 5 9 9 H 1.09002 * 109.47084 * 34.99647 * 8 7 6 10 10 C 1.53002 * 109.47026 * 275.00063 * 8 7 6 11 11 C 1.50694 * 109.47329 * 154.99821 * 8 7 6 12 12 C 1.38304 * 119.93130 * 39.72624 * 11 8 7 13 13 C 1.38102 * 120.06676 * 179.72432 * 12 11 8 14 14 C 1.38876 * 119.93202 * 0.54997 * 13 12 11 15 15 O 1.35748 * 120.07151 * 179.74644 * 14 13 12 16 16 C 1.34830 * 117.00323 * 174.43979 * 15 14 13 17 17 H 1.08000 * 120.00053 * 5.05744 * 16 15 14 18 18 C 1.38660 * 120.00231 * 185.05463 * 16 15 14 19 19 N 1.31551 * 119.99642 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99578 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47248 * 90.00205 * 20 18 16 22 22 H 1.48499 * 109.46504 * 209.99506 * 20 18 16 23 23 H 1.48498 * 109.47479 * 329.99683 * 20 18 16 24 24 C 1.38880 * 119.86456 * 359.72672 * 14 13 12 25 25 C 1.38107 * 119.92842 * 359.97438 * 24 14 13 26 26 C 1.38231 * 119.97311 * 180.27247 * 2 1 3 27 27 F 1.35104 * 120.05887 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47015 * 89.99800 * 1 2 3 29 29 H 1.08990 * 109.47266 * 210.00071 * 1 2 3 30 30 H 1.08999 * 109.46769 * 330.00500 * 1 2 3 31 31 H 1.07993 * 119.92157 * 359.97438 * 3 2 1 32 32 H 1.07995 * 119.94061 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.02234 * 179.97438 * 5 4 3 34 34 H 0.97001 * 119.99865 * 180.27386 * 7 6 5 35 35 H 1.09000 * 109.47364 * 59.99586 * 10 8 7 36 36 H 1.08996 * 109.46778 * 179.97438 * 10 8 7 37 37 H 1.09002 * 109.46849 * 299.99728 * 10 8 7 38 38 H 1.07992 * 119.96480 * 0.02562 * 12 11 8 39 39 H 1.07999 * 120.03036 * 180.27286 * 13 12 11 40 40 H 0.97008 * 119.99326 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.03856 * 179.97438 * 24 14 13 42 42 H 1.07996 * 119.96574 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1983 0.0000 4 6 3.5805 1.2028 -0.0005 5 6 4.2777 0.0095 -0.0005 6 6 3.5888 -1.1954 -0.0005 7 7 4.2916 -2.4044 -0.0011 8 6 5.7566 -2.4002 -0.0011 9 1 6.1175 -1.5576 0.5887 10 6 6.2662 -2.2724 -1.4381 11 6 6.2626 -3.6866 0.5988 12 6 5.6270 -4.8802 0.3089 13 6 6.0919 -6.0616 0.8526 14 6 7.1918 -6.0487 1.7003 15 8 7.6480 -7.2075 2.2404 16 6 8.7859 -7.1411 2.9605 17 1 9.2470 -6.1840 3.1547 18 6 9.3642 -8.3016 3.4519 19 7 10.4748 -8.2367 4.1540 20 14 8.5671 -9.9571 3.1154 21 1 9.1072 -10.5189 1.8514 22 1 8.8629 -10.8856 4.2359 23 1 7.0975 -9.7830 2.9917 24 6 7.8244 -4.8477 1.9941 25 6 7.3586 -3.6705 1.4423 26 6 2.1976 -1.1974 -0.0057 27 9 1.5228 -2.3678 -0.0118 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6565 2.1326 -0.0004 32 1 4.1165 2.1403 -0.0010 33 1 5.3576 0.0147 -0.0014 34 1 3.8090 -3.2458 -0.0051 35 1 5.9002 -1.3419 -1.8720 36 1 7.3562 -2.2688 -1.4380 37 1 5.9053 -3.1150 -2.0278 38 1 4.7693 -4.8891 -0.3472 39 1 5.5977 -6.9939 0.6223 40 1 10.8795 -9.0487 4.4975 41 1 8.6798 -4.8344 2.6533 42 1 7.8503 -2.7364 1.6700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179932365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = -40.114255 kcal Electronic energy + Delta-G solvation = -24914.351958 eV Core-core repulsion = 21159.543926 eV Total energy + Delta-G solvation = -3754.808031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.72091 -41.13119 -40.27465 -38.95496 -36.88178 -34.50769 -33.50059 -32.52894 -31.89135 -29.82007 -29.13402 -27.76630 -27.28967 -24.37381 -23.93673 -23.05674 -22.48798 -21.10330 -19.76524 -19.26796 -18.76752 -18.01449 -17.20370 -16.68506 -16.61677 -16.36154 -15.97252 -15.76791 -15.58934 -15.24634 -15.19947 -14.76171 -14.44100 -14.25894 -14.23856 -14.12428 -14.05436 -13.89862 -13.61360 -13.20274 -13.06854 -12.93561 -12.75918 -12.52125 -12.39190 -12.34195 -12.09052 -11.84413 -11.76908 -11.33246 -11.02278 -10.90338 -9.88271 -9.51436 -9.07428 -8.52701 -8.34652 -6.25333 0.32785 0.48952 0.51802 0.59609 1.29802 1.33244 1.49792 2.25540 2.36269 2.73296 2.80875 3.00373 3.11067 3.41934 3.71490 3.84350 3.97613 4.05898 4.09944 4.27565 4.35834 4.39408 4.47025 4.49738 4.51425 4.65518 4.77881 4.84561 4.85947 4.90696 4.93814 5.07966 5.16109 5.18449 5.27979 5.33446 5.36465 5.47568 5.50880 5.62795 5.66306 5.74408 5.85527 5.94169 6.15955 6.35492 6.67210 6.81597 7.55068 8.58683 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026128 B = 0.002556 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.370838 B =10952.788340 C =11474.744817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.161 4.161 4 C -0.071 4.071 5 C -0.192 4.192 6 C 0.187 3.813 7 N -0.739 5.739 8 C 0.210 3.790 9 H 0.095 0.905 10 C -0.157 4.157 11 C -0.159 4.159 12 C -0.063 4.063 13 C -0.190 4.190 14 C 0.122 3.878 15 O -0.244 6.244 16 C -0.400 4.400 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.264 1.264 24 C -0.232 4.232 25 C -0.059 4.059 26 C -0.020 4.020 27 F -0.157 7.157 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.399 0.601 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.142 0.858 39 H 0.127 0.873 40 H 0.285 0.715 41 H 0.112 0.888 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 19.898 -11.547 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.181 4.181 4 C -0.090 4.090 5 C -0.215 4.215 6 C 0.082 3.918 7 N -0.368 5.368 8 C 0.105 3.895 9 H 0.113 0.887 10 C -0.215 4.215 11 C -0.160 4.160 12 C -0.081 4.081 13 C -0.209 4.209 14 C 0.073 3.927 15 O -0.152 6.152 16 C -0.476 4.476 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.189 1.189 24 C -0.251 4.251 25 C -0.077 4.077 26 C -0.044 4.044 27 F -0.136 7.136 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.169 0.831 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.033 19.528 -11.434 27.733 hybrid contribution 0.126 -1.698 0.425 1.755 sum -15.907 17.830 -11.008 26.308 Atomic orbital electron populations 1.20776 0.89312 1.03623 1.03320 1.20046 0.97644 0.91489 0.99134 1.20999 0.94414 0.97053 1.05645 1.21313 0.94170 0.98179 0.95333 1.20855 1.00801 0.90169 1.09662 1.18059 0.89226 0.88393 0.96128 1.44931 1.05295 1.05122 1.81436 1.19593 0.78898 0.94368 0.96601 0.88691 1.22228 1.01799 1.02453 0.95058 1.19728 0.98775 0.95051 1.02482 1.20699 0.98789 0.90624 0.97978 1.20459 0.98383 1.00103 1.01927 1.19675 0.94296 0.85961 0.92772 1.83520 1.39835 1.30006 1.61801 1.20721 0.99659 0.96654 1.30595 0.89889 1.25267 0.95650 1.02514 0.95341 1.69724 1.19243 1.31383 1.35802 0.85236 0.79403 0.77620 0.78575 1.19030 1.19185 1.18879 1.21294 1.04075 0.93104 1.06662 1.20899 0.95343 0.97144 0.94351 1.17335 0.88429 0.81815 1.16788 1.91375 1.80286 1.46761 1.95189 0.90035 0.92358 0.89052 0.83139 0.82778 0.83965 0.76552 0.91097 0.90962 0.92814 0.84068 0.85477 0.90527 0.87000 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.83 71.24 0.70 -0.91 16 2 C -0.08 -1.52 5.88 -19.84 -0.12 -1.64 16 3 C -0.16 -2.34 9.70 22.29 0.22 -2.13 16 4 C -0.07 -1.00 10.04 22.26 0.22 -0.78 16 5 C -0.19 -3.39 8.85 22.39 0.20 -3.19 16 6 C 0.19 4.12 6.65 38.21 0.25 4.37 16 7 N -0.74 -16.62 5.20 -322.29 -1.68 -18.29 16 8 C 0.21 4.51 2.47 44.24 0.11 4.61 16 9 H 0.10 1.83 6.35 -2.39 -0.02 1.81 16 10 C -0.16 -2.93 9.41 71.98 0.68 -2.25 16 11 C -0.16 -4.52 4.96 -19.83 -0.10 -4.62 16 12 C -0.06 -1.89 9.05 22.25 0.20 -1.69 16 13 C -0.19 -7.18 9.99 22.39 0.22 -6.95 16 14 C 0.12 5.64 6.65 22.58 0.15 5.79 16 15 O -0.24 -13.21 8.59 -22.72 -0.20 -13.40 16 16 C -0.40 -23.42 9.95 67.92 0.68 -22.75 16 17 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 18 C 0.01 0.63 5.49 84.84 0.47 1.10 16 19 N -0.92 -54.75 13.96 21.61 0.30 -54.45 16 20 Si 0.97 45.41 28.62 68.60 1.96 47.37 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16 24 C -0.23 -9.88 9.17 22.39 0.21 -9.67 16 25 C -0.06 -1.92 9.66 22.25 0.21 -1.70 16 26 C -0.02 -0.47 7.25 22.48 0.16 -0.30 16 27 F -0.16 -4.08 15.85 44.97 0.71 -3.36 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.94 7.64 -2.39 -0.02 0.92 16 30 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 33 H 0.14 2.10 6.12 -2.91 -0.02 2.08 16 34 H 0.40 9.40 6.34 -92.71 -0.59 8.81 16 35 H 0.07 1.15 7.71 -2.39 -0.02 1.13 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.14 3.42 6.89 -2.91 -0.02 3.40 16 39 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.29 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 42 H 0.14 3.72 8.03 -2.91 -0.02 3.69 16 Total: -1.00 -66.74 353.69 6.04 -60.70 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.47 Total: 24.16 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.46 Total: -42.72 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.37 Total: -72.74 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.20 Total: -13.40 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.71 Total: -3.36 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.96 Total: 47.37 kcal Total: -66.74 6.04 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179932365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.586 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds