Wall clock time and date at job start Tue Mar 31 2020 11:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38173 * 120.02781 * 2 1 4 4 C 1.38241 * 120.05599 * 180.25768 * 3 2 1 5 5 C 1.38291 * 120.11180 * 359.44059 * 4 3 2 6 6 C 1.50696 * 119.97141 * 180.27964 * 5 4 3 7 7 C 1.50698 * 109.47221 * 90.00482 * 6 5 4 8 8 O 1.21298 * 120.00080 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00212 * 179.97438 * 7 6 5 10 10 C 1.40160 * 119.99889 * 179.97438 * 9 7 6 11 11 C 1.40402 * 125.97393 * 359.72207 * 10 9 7 12 12 C 1.35241 * 107.86599 * 179.82442 * 11 10 9 13 13 N 1.34969 * 107.86360 * 0.42718 * 12 11 10 14 14 C 1.46493 * 125.97979 * 179.68999 * 13 12 11 15 15 C 1.50700 * 109.46875 * 125.01735 * 14 13 12 16 16 H 1.07989 * 120.00246 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47416 * 90.00055 * 19 17 15 21 21 H 1.48497 * 109.47016 * 210.00022 * 19 17 15 22 22 H 1.48503 * 109.47314 * 329.99671 * 19 17 15 23 23 N 1.31218 * 125.97211 * 180.02562 * 10 9 7 24 24 C 1.38121 * 120.05218 * 0.25948 * 5 4 3 25 25 C 1.38706 * 120.03198 * 179.67977 * 2 1 3 26 26 O 1.35904 * 120.05414 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.46977 * 270.32127 * 1 2 3 28 28 H 1.09001 * 109.47211 * 30.31825 * 1 2 3 29 29 H 1.08997 * 109.46993 * 150.31913 * 1 2 3 30 30 H 1.08001 * 119.97126 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.94762 * 179.72634 * 4 3 2 32 32 H 1.09003 * 109.47221 * 209.99953 * 6 5 4 33 33 H 1.08992 * 109.47693 * 329.99953 * 6 5 4 34 34 H 0.96995 * 119.99813 * 0.02562 * 9 7 6 35 35 H 1.08003 * 126.07065 * 359.97438 * 11 10 9 36 36 H 1.08000 * 126.06745 * 180.13649 * 12 11 10 37 37 H 1.08999 * 109.47357 * 245.02221 * 14 13 12 38 38 H 1.09006 * 109.46957 * 5.02116 * 14 13 12 39 39 H 0.97007 * 119.99684 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.02833 * 179.97438 * 24 5 4 41 41 H 0.96704 * 113.99598 * 270.02262 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0054 5 6 4.2752 0.0011 0.0009 6 6 5.7822 0.0055 0.0014 7 6 6.2841 0.0141 1.4223 8 8 5.4956 0.0168 2.3440 9 7 7.6091 0.0187 1.6690 10 6 8.0758 0.0273 2.9906 11 6 7.2790 0.0372 4.1466 12 6 8.1033 0.0393 5.2187 13 7 9.3741 0.0405 4.7639 14 6 10.5839 0.0492 5.5900 15 6 11.4620 -1.1140 5.2069 16 1 11.1504 -1.7917 4.4259 17 6 12.6635 -1.3131 5.8535 18 7 13.0427 -0.4881 6.8049 19 14 13.7523 -2.7545 5.3782 20 1 14.6853 -2.3362 4.3013 21 1 14.5305 -3.1986 6.5624 22 1 12.9068 -3.8748 4.8930 23 7 9.3338 0.0329 3.3638 24 6 3.5887 -1.1974 0.0072 25 6 2.2012 -1.2008 0.0067 26 8 1.5234 -2.3788 0.0128 27 1 -0.3633 0.0058 1.0276 28 1 -0.3634 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.6584 2.1316 -0.0004 31 1 4.1195 2.1330 -0.0098 32 1 6.1484 -0.8860 -0.5078 33 1 6.1431 0.8939 -0.5168 34 1 8.2396 0.0170 0.9320 35 1 6.1993 0.0401 4.1748 36 1 7.7989 0.0442 6.2549 37 1 11.1258 0.9815 5.4309 38 1 10.3069 -0.0353 6.6408 39 1 13.8882 -0.6280 7.2595 40 1 4.1314 -2.1312 0.0117 41 1 1.3267 -2.7147 0.8980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180340761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:08 Heat of formation + Delta-G solvation = 22.103972 kcal Electronic energy + Delta-G solvation = -24486.239629 eV Core-core repulsion = 20754.049544 eV Total energy + Delta-G solvation = -3732.190085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.78662 -40.20957 -39.13731 -36.95655 -34.76320 -33.83614 -33.35215 -31.15967 -30.14841 -29.86488 -29.31013 -26.79557 -25.63138 -23.15131 -22.93304 -21.93400 -21.05004 -20.19447 -19.55356 -18.12320 -16.96077 -16.65130 -16.53755 -16.44417 -16.02180 -15.40013 -15.24467 -15.12385 -14.38006 -14.23836 -13.91404 -13.85950 -13.55871 -13.14255 -12.85119 -12.78130 -12.53280 -12.34520 -12.25787 -11.94612 -11.93041 -11.74161 -11.54626 -11.05291 -10.90464 -10.68549 -10.44234 -10.27475 -10.03037 -9.62034 -9.51137 -8.97146 -8.65276 -8.63810 -8.15071 -7.48965 -6.26093 -4.31193 0.99845 1.12122 2.31170 2.75853 2.91486 3.22494 3.28301 3.33100 3.38915 3.70135 3.92266 3.99966 4.30809 4.38126 4.56889 4.69301 4.80874 4.87755 5.04208 5.09082 5.17764 5.25483 5.33411 5.41812 5.51443 5.55869 5.73675 5.79179 5.88225 6.10500 6.25276 6.27436 6.32802 6.47292 6.57871 6.61373 6.84289 7.03349 7.39333 7.42865 7.55553 7.69360 7.87145 8.02553 8.24300 8.61618 8.78379 9.34439 10.82615 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.002220 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.401405 B =12606.845866 C =12831.825679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.113 4.113 3 C -0.105 4.105 4 C -0.107 4.107 5 C -0.054 4.054 6 C -0.098 4.098 7 C 0.519 3.481 8 O -0.509 6.509 9 N -0.632 5.632 10 C 0.256 3.744 11 C -0.287 4.287 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.258 3.742 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.909 3.091 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.305 5.305 24 C -0.123 4.123 25 C 0.102 3.898 26 O -0.499 6.499 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.411 0.589 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.339 2.184 -13.958 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.125 4.125 5 C -0.054 4.054 6 C -0.138 4.138 7 C 0.305 3.695 8 O -0.382 6.382 9 N -0.280 5.280 10 C 0.003 3.997 11 C -0.319 4.319 12 C -0.099 4.099 13 N -0.101 5.101 14 C 0.141 3.859 15 C -0.567 4.567 16 H 0.087 0.913 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.736 3.264 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 N -0.136 5.136 24 C -0.142 4.142 25 C 0.058 3.942 26 O -0.309 6.309 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.246 0.754 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -20.420 2.276 -14.081 24.909 hybrid contribution 0.339 -0.819 0.369 0.960 sum -20.081 1.457 -13.712 24.359 Atomic orbital electron populations 1.20683 0.90821 1.03041 1.02297 1.20212 0.96663 0.92654 1.01779 1.20880 0.93961 0.97156 1.00327 1.21002 0.94182 0.97526 0.99828 1.19058 0.93494 0.93023 0.99856 1.20639 0.93080 1.05915 0.94198 1.20486 0.81158 0.76466 0.91425 1.90667 1.54888 1.47095 1.45592 1.42504 1.07411 1.72828 1.05267 1.19119 0.91998 1.03491 0.85051 1.21513 1.01113 1.20101 0.89151 1.22568 0.84954 1.02441 0.99964 1.49085 1.06840 1.51620 1.02511 1.19750 0.78575 0.99299 0.88316 1.21249 1.03686 1.11012 1.20738 0.91320 1.24954 0.97466 0.97056 0.94658 1.69919 1.22690 1.37054 1.23657 0.86316 0.80137 0.81935 0.78041 1.20322 1.20974 1.19735 1.77328 1.15845 1.27953 0.92456 1.21231 0.93462 0.98276 1.01219 1.18176 0.89596 0.84846 1.01581 1.84771 1.76418 1.36123 1.33546 0.91319 0.91551 0.90979 0.85626 0.85760 0.87435 0.87330 0.75386 0.82353 0.81516 0.93710 0.92528 0.92313 0.85468 0.75460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.79 36.00 0.35 -0.46 16 2 C -0.11 -1.08 5.89 -104.47 -0.62 -1.70 16 3 C -0.11 -0.97 9.70 -39.60 -0.38 -1.36 16 4 C -0.11 -1.05 9.70 -39.56 -0.38 -1.43 16 5 C -0.05 -0.55 4.37 -104.65 -0.46 -1.01 16 6 C -0.10 -0.86 5.83 -29.04 -0.17 -1.03 16 7 C 0.52 6.97 7.79 -10.99 -0.09 6.88 16 8 O -0.51 -8.61 13.17 5.54 0.07 -8.53 16 9 N -0.63 -9.29 5.45 -11.13 -0.06 -9.35 16 10 C 0.26 5.06 8.11 -154.39 -1.25 3.81 16 11 C -0.29 -5.67 9.60 -39.84 -0.38 -6.05 16 12 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 13 N -0.32 -7.39 3.67 -62.56 -0.23 -7.62 16 14 C 0.26 6.54 6.26 -5.20 -0.03 6.51 16 15 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 19 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 N -0.30 -6.95 12.42 31.44 0.39 -6.56 16 24 C -0.12 -1.32 9.64 -39.43 -0.38 -1.70 16 25 C 0.10 1.07 6.68 -39.22 -0.26 0.81 16 26 O -0.50 -4.57 12.55 -19.44 -0.24 -4.82 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.07 0.53 7.53 -51.93 -0.39 0.14 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.41 4.75 8.82 -40.82 -0.36 4.39 16 35 H 0.16 3.04 5.92 -52.48 -0.31 2.73 16 36 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 41 H 0.39 2.02 9.06 45.56 0.41 2.43 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -34.57 359.19 -8.02 -42.59 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.41 Total: 6.40 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -4.66 Total: -9.29 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.84 Total: -48.02 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.17 Total: -13.35 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.57 -8.02 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180340761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.692 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds