Wall clock time and date at job start Tue Mar 31 2020 11:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38173 * 120.02781 * 2 1 4 4 C 1.38241 * 120.05599 * 180.25768 * 3 2 1 5 5 C 1.38291 * 120.11180 * 359.44059 * 4 3 2 6 6 C 1.50696 * 119.97141 * 180.27964 * 5 4 3 7 7 C 1.50698 * 109.47221 * 90.00482 * 6 5 4 8 8 O 1.21298 * 120.00080 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00212 * 179.97438 * 7 6 5 10 10 C 1.40160 * 119.99889 * 179.97438 * 9 7 6 11 11 C 1.40402 * 125.97393 * 359.72207 * 10 9 7 12 12 C 1.35241 * 107.86599 * 179.82442 * 11 10 9 13 13 N 1.34969 * 107.86360 * 0.42718 * 12 11 10 14 14 C 1.46493 * 125.97979 * 179.68999 * 13 12 11 15 15 C 1.50700 * 109.46875 * 125.01735 * 14 13 12 16 16 H 1.07989 * 120.00246 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99707 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47416 * 90.00055 * 19 17 15 21 21 H 1.48497 * 109.47016 * 210.00022 * 19 17 15 22 22 H 1.48503 * 109.47314 * 329.99671 * 19 17 15 23 23 N 1.31218 * 125.97211 * 180.02562 * 10 9 7 24 24 C 1.38121 * 120.05218 * 0.25948 * 5 4 3 25 25 C 1.38706 * 120.03198 * 179.67977 * 2 1 3 26 26 O 1.35904 * 120.05414 * 0.02562 * 25 2 1 27 27 H 1.08994 * 109.46977 * 270.32127 * 1 2 3 28 28 H 1.09001 * 109.47211 * 30.31825 * 1 2 3 29 29 H 1.08997 * 109.46993 * 150.31913 * 1 2 3 30 30 H 1.08001 * 119.97126 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.94762 * 179.72634 * 4 3 2 32 32 H 1.09003 * 109.47221 * 209.99953 * 6 5 4 33 33 H 1.08992 * 109.47693 * 329.99953 * 6 5 4 34 34 H 0.96995 * 119.99813 * 0.02562 * 9 7 6 35 35 H 1.08003 * 126.07065 * 359.97438 * 11 10 9 36 36 H 1.08000 * 126.06745 * 180.13649 * 12 11 10 37 37 H 1.08999 * 109.47357 * 245.02221 * 14 13 12 38 38 H 1.09006 * 109.46957 * 5.02116 * 14 13 12 39 39 H 0.97007 * 119.99684 * 180.02562 * 18 17 15 40 40 H 1.08007 * 120.02833 * 179.97438 * 24 5 4 41 41 H 0.96704 * 113.99598 * 270.02262 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0054 5 6 4.2752 0.0011 0.0009 6 6 5.7822 0.0055 0.0014 7 6 6.2841 0.0141 1.4223 8 8 5.4956 0.0168 2.3440 9 7 7.6091 0.0187 1.6690 10 6 8.0758 0.0273 2.9906 11 6 7.2790 0.0372 4.1466 12 6 8.1033 0.0393 5.2187 13 7 9.3741 0.0405 4.7639 14 6 10.5839 0.0492 5.5900 15 6 11.4620 -1.1140 5.2069 16 1 11.1504 -1.7917 4.4259 17 6 12.6635 -1.3131 5.8535 18 7 13.0427 -0.4881 6.8049 19 14 13.7523 -2.7545 5.3782 20 1 14.6853 -2.3362 4.3013 21 1 14.5305 -3.1986 6.5624 22 1 12.9068 -3.8748 4.8930 23 7 9.3338 0.0329 3.3638 24 6 3.5887 -1.1974 0.0072 25 6 2.2012 -1.2008 0.0067 26 8 1.5234 -2.3788 0.0128 27 1 -0.3633 0.0058 1.0276 28 1 -0.3634 0.8871 -0.5188 29 1 -0.3633 -0.8928 -0.5089 30 1 1.6584 2.1316 -0.0004 31 1 4.1195 2.1330 -0.0098 32 1 6.1484 -0.8860 -0.5078 33 1 6.1431 0.8939 -0.5168 34 1 8.2396 0.0170 0.9320 35 1 6.1993 0.0401 4.1748 36 1 7.7989 0.0442 6.2549 37 1 11.1258 0.9815 5.4309 38 1 10.3069 -0.0353 6.6408 39 1 13.8882 -0.6280 7.2595 40 1 4.1314 -2.1312 0.0117 41 1 1.3267 -2.7147 0.8980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180340761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:08 Heat of formation + Delta-G solvation = -0.851540 kcal Electronic energy + Delta-G solvation = -24487.235055 eV Core-core repulsion = 20754.049544 eV Total energy + Delta-G solvation = -3733.185511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.21644 -41.12302 -40.23475 -37.68142 -36.19811 -35.25795 -34.54737 -32.84317 -31.01021 -30.84222 -30.65665 -28.56147 -26.52435 -24.92286 -23.65116 -23.12184 -22.14177 -21.55579 -20.88220 -18.90062 -18.68438 -18.21505 -17.85920 -17.21651 -17.09099 -16.64073 -16.37640 -16.10714 -16.01427 -15.54300 -15.18554 -14.73622 -14.49634 -14.26911 -14.15268 -13.82824 -13.80176 -13.74371 -13.40528 -13.13146 -12.93359 -12.74495 -12.62048 -12.58429 -12.29720 -12.20737 -12.04049 -11.60885 -11.38331 -11.36450 -10.87197 -10.72718 -9.75372 -9.69415 -9.35153 -9.11610 -8.33725 -6.47873 0.27301 0.39975 0.96785 1.37402 1.38302 1.42167 1.48795 1.51404 2.25356 2.29582 2.41074 2.75024 2.97975 3.33166 3.64002 3.80598 3.91352 4.04679 4.09369 4.26327 4.27841 4.38058 4.56107 4.64344 4.78265 4.80621 4.81281 4.89081 4.91706 4.93345 5.02420 5.08268 5.17854 5.28547 5.40401 5.55949 5.58473 5.61436 5.79335 5.94422 5.95599 6.25485 6.32336 6.64194 6.84363 7.02715 7.17231 7.22051 8.73849 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.002220 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.401405 B =12606.845866 C =12831.825679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.124 4.124 3 C -0.112 4.112 4 C -0.118 4.118 5 C -0.067 4.067 6 C -0.086 4.086 7 C 0.521 3.479 8 O -0.544 6.544 9 N -0.626 5.626 10 C 0.266 3.734 11 C -0.294 4.294 12 C 0.054 3.946 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.547 4.547 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.273 1.273 23 N -0.346 5.346 24 C -0.141 4.141 25 C 0.088 3.912 26 O -0.507 6.507 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.426 0.574 35 H 0.166 0.834 36 H 0.199 0.801 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.273 0.727 40 H 0.128 0.872 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.145 1.997 -15.163 26.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.130 4.130 4 C -0.136 4.136 5 C -0.068 4.068 6 C -0.125 4.125 7 C 0.309 3.691 8 O -0.419 6.419 9 N -0.276 5.276 10 C 0.011 3.989 11 C -0.325 4.325 12 C -0.095 4.095 13 N -0.127 5.127 14 C 0.154 3.846 15 C -0.585 4.585 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.559 5.559 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.198 1.198 23 N -0.177 5.177 24 C -0.160 4.160 25 C 0.044 3.956 26 O -0.320 6.320 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.264 0.736 35 H 0.183 0.817 36 H 0.216 0.784 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -21.245 2.091 -15.310 26.270 hybrid contribution 0.419 -0.738 0.703 1.102 sum -20.826 1.353 -14.607 25.473 Atomic orbital electron populations 1.20700 0.89360 1.03541 1.02921 1.20535 0.97934 0.92577 1.01395 1.21199 0.94136 0.97929 0.99688 1.21297 0.94678 0.98038 0.99572 1.19249 0.94234 0.93073 1.00194 1.20704 0.92150 1.08755 0.90939 1.21394 0.80049 0.74582 0.93043 1.90645 1.55550 1.48470 1.47248 1.42701 1.08444 1.72715 1.03734 1.19502 0.91132 1.00973 0.87273 1.21700 1.01333 1.20219 0.89244 1.23162 0.83781 1.00788 1.01744 1.48836 1.07010 1.54003 1.02833 1.19333 0.79233 0.97410 0.88662 1.21389 1.04781 1.11652 1.20690 0.92957 1.25758 0.98550 0.99558 0.94451 1.69996 1.23279 1.38370 1.24250 0.85332 0.78266 0.78593 0.78130 1.19718 1.19721 1.19759 1.77248 1.17647 1.30336 0.92486 1.21413 0.93891 0.98713 1.01958 1.18384 0.89839 0.85483 1.01909 1.84722 1.76298 1.35926 1.35033 0.90562 0.90211 0.91304 0.83610 0.84271 0.84861 0.84036 0.73595 0.81677 0.78413 0.96046 0.92463 0.91830 0.85363 0.73727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.79 71.23 0.70 -0.71 16 2 C -0.12 -2.22 5.89 -19.77 -0.12 -2.34 16 3 C -0.11 -1.87 9.70 22.25 0.22 -1.65 16 4 C -0.12 -2.07 9.70 22.28 0.22 -1.86 16 5 C -0.07 -1.26 4.37 -19.88 -0.09 -1.34 16 6 C -0.09 -1.28 5.83 29.10 0.17 -1.11 16 7 C 0.52 13.05 7.79 87.66 0.68 13.74 16 8 O -0.54 -17.78 13.17 -3.08 -0.04 -17.82 16 9 N -0.63 -17.49 5.45 -307.51 -1.68 -19.16 16 10 C 0.27 10.37 8.11 133.32 1.08 11.45 16 11 C -0.29 -11.43 9.60 22.11 0.21 -11.21 16 12 C 0.05 2.13 11.44 83.52 0.96 3.09 16 13 N -0.34 -16.23 3.67 -351.85 -1.29 -17.52 16 14 C 0.27 14.16 6.26 85.63 0.54 14.70 16 15 C -0.55 -30.86 9.24 25.60 0.24 -30.62 16 16 H 0.05 3.06 7.81 -2.92 -0.02 3.04 16 17 C 0.02 0.95 5.46 84.66 0.46 1.41 16 18 N -0.92 -52.09 13.29 21.45 0.28 -51.81 16 19 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 N -0.35 -15.95 12.42 -54.45 -0.68 -16.63 16 24 C -0.14 -2.88 9.64 22.36 0.22 -2.67 16 25 C 0.09 1.77 6.68 22.50 0.15 1.92 16 26 O -0.51 -8.98 12.55 -92.47 -1.16 -10.14 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.07 0.93 7.53 -2.39 -0.02 0.91 16 30 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.13 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.14 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.43 9.09 8.82 -92.71 -0.82 8.27 16 35 H 0.17 6.23 5.92 -2.91 -0.02 6.21 16 36 H 0.20 6.24 8.06 -2.91 -0.02 6.22 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 2.91 8.07 -2.38 -0.02 2.89 16 39 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.40 3.96 9.06 -74.05 -0.67 3.29 16 Total: -1.00 -75.06 359.19 2.69 -72.37 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.41 Total: 22.38 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.63 Total: -7.20 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -3.36 Total: -105.11 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.20 Total: -27.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -75.06 2.69 -72.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180340761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.516 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds