Wall clock time and date at job start Tue Mar 31 2020 11:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 120.00272 * 2 1 4 4 C 1.38237 * 120.00192 * 180.02562 * 3 2 1 5 5 C 1.38241 * 119.99870 * 0.25368 * 4 3 2 6 6 C 1.50697 * 120.00269 * 179.72805 * 5 4 3 7 7 C 1.53007 * 109.47172 * 89.99810 * 6 5 4 8 8 N 1.46498 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.39925 * 119.99847 * 180.02562 * 8 7 6 10 10 C 1.38711 * 120.07995 * 359.72457 * 9 8 7 11 11 C 1.38219 * 120.01850 * 179.70098 * 10 9 8 12 12 C 1.38534 * 120.17022 * 0.59403 * 11 10 9 13 13 F 1.35104 * 119.91619 * 179.70463 * 12 11 10 14 14 C 1.38349 * 120.16240 * 359.68121 * 12 11 10 15 15 C 1.38730 * 119.98100 * 0.02562 * 14 12 11 16 16 O 1.35794 * 120.08496 * 180.02562 * 15 14 12 17 17 C 1.34799 * 117.00169 * 354.39662 * 16 15 14 18 18 H 1.07997 * 120.00145 * 5.06668 * 17 16 15 19 19 C 1.38630 * 119.99879 * 185.06397 * 17 16 15 20 20 N 1.31582 * 119.99706 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99993 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46762 * 90.00301 * 21 19 17 23 23 H 1.48501 * 109.46727 * 210.00013 * 21 19 17 24 24 H 1.48499 * 109.47100 * 330.00152 * 21 19 17 25 25 C 1.38243 * 119.99513 * 359.48790 * 5 4 3 26 26 C 1.38232 * 120.00077 * 0.49295 * 25 5 4 27 27 H 1.09004 * 109.47006 * 89.99888 * 1 2 3 28 28 H 1.08994 * 109.47513 * 210.00152 * 1 2 3 29 29 H 1.09007 * 109.46919 * 330.00662 * 1 2 3 30 30 H 1.08001 * 120.00034 * 359.97311 * 3 2 1 31 31 H 1.07991 * 120.00413 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47249 * 209.99937 * 6 5 4 33 33 H 1.09000 * 109.46983 * 329.99991 * 6 5 4 34 34 H 1.09002 * 109.47137 * 300.00196 * 7 6 5 35 35 H 1.09000 * 109.47019 * 60.00203 * 7 6 5 36 36 H 0.97003 * 119.99631 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99418 * 359.97438 * 10 9 8 38 38 H 1.07993 * 119.91290 * 180.28018 * 11 10 9 39 39 H 1.07998 * 120.01204 * 180.02562 * 14 12 11 40 40 H 0.96999 * 119.99401 * 179.97438 * 20 19 17 41 41 H 1.08001 * 119.99762 * 180.25631 * 25 5 4 42 42 H 1.08001 * 119.99532 * 179.76353 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0064 6 6 5.7787 -0.0003 -0.0131 7 6 6.2952 -0.0035 1.4271 8 7 7.7601 -0.0030 1.4205 9 6 8.4652 -0.0062 2.6291 10 6 7.7788 -0.0041 3.8344 11 6 8.4765 -0.0135 5.0276 12 6 9.8618 -0.0126 5.0240 13 9 10.5386 -0.0158 6.1933 14 6 10.5539 -0.0090 3.8261 15 6 9.8602 -0.0057 2.6247 16 8 10.5373 -0.0027 1.4476 17 6 11.8786 0.1142 1.5135 18 1 12.3739 0.1177 2.4732 19 6 12.6223 0.2300 0.3493 20 7 12.0188 0.2262 -0.8199 21 14 14.4811 0.3912 0.4405 22 1 15.0973 -0.9594 0.4052 23 1 14.9661 1.1871 -0.7156 24 1 14.8573 1.0741 1.7044 25 6 3.5804 -1.1973 -0.0010 26 6 2.1981 -1.1972 0.0000 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6582 2.1324 -0.0004 31 1 4.1206 2.1323 -0.0010 32 1 6.1396 -0.8891 -0.5306 33 1 6.1397 0.8909 -0.5266 34 1 5.9342 0.8853 1.9446 35 1 5.9341 -0.8947 1.9405 36 1 8.2413 -0.0012 0.5782 37 1 6.6988 0.0004 3.8407 38 1 7.9403 -0.0164 5.9650 39 1 11.6339 -0.0088 3.8261 40 1 12.5391 0.3076 -1.6345 41 1 4.1203 -2.1326 -0.0013 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180614306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:38 Heat of formation + Delta-G solvation = -48.247398 kcal Electronic energy + Delta-G solvation = -24521.627153 eV Core-core repulsion = 20766.466442 eV Total energy + Delta-G solvation = -3755.160711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.64286 -40.91968 -40.34947 -38.38656 -36.76927 -34.54918 -34.24305 -31.78559 -31.47180 -30.92244 -28.97115 -27.32510 -26.60769 -24.38958 -23.58727 -23.06434 -22.46336 -21.45742 -20.00598 -19.29164 -17.82233 -17.37327 -16.95667 -16.69560 -16.67999 -16.43663 -15.99918 -15.90408 -15.58760 -15.55235 -15.12166 -15.05621 -14.94106 -14.54288 -14.24715 -13.86386 -13.70079 -13.48617 -13.34451 -13.30000 -13.05501 -12.95930 -12.64915 -12.40607 -12.19248 -12.18276 -12.01398 -11.90860 -11.74180 -11.49081 -10.79949 -10.69492 -9.79898 -9.44092 -9.37085 -8.46792 -8.03743 -6.09004 0.41768 0.48035 0.52921 0.61031 1.35522 1.42718 1.51072 2.16319 2.56441 2.77187 2.87442 3.10704 3.33357 3.64046 3.89595 3.92048 4.01677 4.09532 4.16497 4.18189 4.19976 4.25630 4.51902 4.54635 4.56392 4.63328 4.75115 4.85854 4.86913 4.98035 4.98491 5.01961 5.06573 5.14726 5.24385 5.32519 5.33926 5.43378 5.46483 5.54371 5.73744 5.75637 5.96734 6.04025 6.15753 6.53417 6.82731 6.99108 7.75402 8.75121 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.002891 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.208217 B = 9684.118124 C =11419.651345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.085 4.085 7 C 0.142 3.858 8 N -0.748 5.748 9 C 0.153 3.847 10 C -0.137 4.137 11 C -0.164 4.164 12 C 0.065 3.935 13 F -0.155 7.155 14 C -0.246 4.246 15 C 0.081 3.919 16 O -0.215 6.215 17 C -0.409 4.409 18 H 0.093 0.907 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.010 2.990 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.121 4.121 26 C -0.127 4.127 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 -0.255 2.361 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.093 4.093 6 C -0.122 4.122 7 C 0.019 3.981 8 N -0.380 5.380 9 C 0.050 3.950 10 C -0.160 4.160 11 C -0.184 4.184 12 C 0.044 3.956 13 F -0.134 7.134 14 C -0.267 4.267 15 C 0.028 3.972 16 O -0.121 6.121 17 C -0.485 4.485 18 H 0.110 0.890 19 C -0.213 4.213 20 N -0.550 5.550 21 Si 0.830 3.170 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.139 4.139 26 C -0.145 4.145 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.728 -0.256 1.985 20.824 hybrid contribution 1.748 0.060 -0.272 1.770 sum -18.980 -0.196 1.713 19.058 Atomic orbital electron populations 1.20828 0.89475 1.03614 1.02979 1.20286 0.97497 0.93031 0.99085 1.21281 0.93896 0.98552 1.00786 1.21254 0.94832 0.97771 1.00110 1.19694 0.94327 0.93927 1.01345 1.20641 0.91798 1.03591 0.96188 1.21279 0.78637 1.01340 0.96890 1.44586 1.05409 1.83229 1.04801 1.17409 0.86975 1.01988 0.88634 1.20371 1.00214 1.06952 0.88508 1.20789 0.90721 1.07075 0.99820 1.17322 0.90701 1.07830 0.79756 1.91382 1.80959 1.94711 1.46347 1.20852 1.00741 1.13745 0.91397 1.19063 0.91090 1.00629 0.86422 1.83855 1.20934 1.82034 1.25315 1.21662 0.79221 1.52416 0.95239 0.88969 1.26355 1.05345 0.96049 0.93557 1.70142 1.38185 1.48502 0.98131 0.84697 0.74442 0.79049 0.78777 1.18977 1.19421 1.18357 1.21255 0.94823 0.97766 1.00083 1.21284 0.93905 0.98544 1.00768 0.90502 0.90716 0.90735 0.84443 0.85499 0.90647 0.90742 0.91964 0.91860 0.76780 0.82425 0.82596 0.85947 0.91885 0.85430 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.49 16 2 C -0.10 -1.63 5.88 -19.87 -0.12 -1.75 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 4 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 5 C -0.09 -2.00 5.13 -19.86 -0.10 -2.10 16 6 C -0.08 -2.02 5.46 29.85 0.16 -1.86 16 7 C 0.14 3.75 4.90 86.38 0.42 4.17 16 8 N -0.75 -27.00 5.73 -338.85 -1.94 -28.94 16 9 C 0.15 6.16 6.67 38.27 0.26 6.41 16 10 C -0.14 -4.51 9.31 22.38 0.21 -4.31 16 11 C -0.16 -5.46 10.02 22.34 0.22 -5.24 16 12 C 0.06 2.59 7.29 22.37 0.16 2.75 16 13 F -0.15 -5.97 17.26 44.97 0.78 -5.19 16 14 C -0.25 -11.38 9.14 22.41 0.20 -11.18 16 15 C 0.08 3.94 6.67 22.69 0.15 4.09 16 16 O -0.21 -12.24 9.00 -22.92 -0.21 -12.44 16 17 C -0.41 -23.47 9.49 67.91 0.64 -22.82 16 18 H 0.09 5.03 5.21 -2.91 -0.02 5.02 16 19 C -0.01 -0.82 5.49 84.82 0.47 -0.35 16 20 N -0.91 -53.75 13.67 21.61 0.30 -53.46 16 21 Si 1.01 42.89 29.55 68.60 2.03 44.92 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 25 C -0.12 -2.42 9.70 22.27 0.22 -2.21 16 26 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.66 8.08 -2.39 -0.02 0.65 16 29 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 30 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.13 2.34 8.06 -2.92 -0.02 2.32 16 32 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 33 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 34 H 0.06 1.55 7.94 -2.39 -0.02 1.53 16 35 H 0.06 1.56 7.96 -2.39 -0.02 1.55 16 36 H 0.40 16.20 7.84 -92.71 -0.73 15.47 16 37 H 0.16 4.05 6.73 -2.91 -0.02 4.03 16 38 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.12 5.90 5.64 -2.91 -0.02 5.88 16 40 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -66.52 361.22 5.53 -60.98 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.32 Total: 35.22 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.26 Total: -41.10 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -1.65 Total: -82.39 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.21 Total: -12.44 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.78 Total: -5.19 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -66.52 5.53 -60.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180614306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.735 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds