Wall clock time and date at job start Tue Mar 31 2020 11:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38826 * 119.06710 * 2 1 4 4 C 1.38591 * 119.68626 * 180.02562 * 3 2 1 5 5 N 1.38645 * 121.04995 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00377 * 359.97438 * 5 4 3 7 7 C 1.53006 * 109.46998 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46626 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46957 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00340 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00347 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99775 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46867 * 90.00546 * 13 11 9 15 15 H 1.48501 * 109.47216 * 210.00404 * 13 11 9 16 16 H 1.48499 * 109.47135 * 330.00745 * 13 11 9 17 17 C 1.41557 * 117.89033 * 0.27443 * 4 3 2 18 18 C 1.40176 * 121.36287 * 180.30312 * 17 4 3 19 19 C 1.36250 * 119.63373 * 179.72127 * 18 17 4 20 20 N 1.48023 * 119.59301 * 179.69801 * 19 18 17 21 21 O 1.21802 * 119.99944 * 180.02562 * 20 19 18 22 22 O 1.21808 * 119.99900 * 0.02562 * 20 19 18 23 23 C 1.39271 * 120.81022 * 359.71806 * 19 18 17 24 24 C 1.36128 * 121.03495 * 0.02562 * 23 19 18 25 25 C 1.40557 * 119.75600 * 359.97438 * 24 23 19 26 26 N 1.31260 * 119.06441 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47125 * 89.99616 * 1 2 3 28 28 H 1.09001 * 109.46869 * 209.99795 * 1 2 3 29 29 H 1.09000 * 109.46750 * 329.99714 * 1 2 3 30 30 H 1.07994 * 120.16122 * 359.97438 * 3 2 1 31 31 H 0.97010 * 119.99713 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47175 * 60.00050 * 6 5 4 33 33 H 1.09001 * 109.47297 * 299.99557 * 6 5 4 34 34 H 1.08993 * 109.46955 * 300.00226 * 7 6 5 35 35 H 1.09000 * 109.47050 * 60.00054 * 7 6 5 36 36 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 37 37 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 38 38 H 0.96991 * 119.99882 * 179.97438 * 12 11 9 39 39 H 1.08000 * 120.18127 * 359.46446 * 18 17 4 40 40 H 1.08000 * 119.47646 * 179.97438 * 23 19 18 41 41 H 1.08001 * 120.11798 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1816 1.2134 0.0000 4 6 3.5674 1.2284 -0.0005 5 7 4.2696 2.4238 0.0000 6 6 3.5468 3.6981 0.0005 7 6 4.5499 4.8535 0.0017 8 6 3.7948 6.1842 0.0016 9 6 4.7828 7.3223 0.0021 10 1 5.8431 7.1169 0.0020 11 6 4.3331 8.6256 0.0027 12 7 5.1953 9.6187 0.0026 13 14 2.4992 8.9809 0.0021 14 1 2.0127 9.0743 1.4021 15 1 2.2440 10.2657 -0.6973 16 1 1.7829 7.8849 -0.6987 17 6 4.2430 -0.0155 -0.0071 18 6 5.6430 -0.0853 -0.0017 19 6 6.2569 -1.3017 -0.0025 20 7 7.7354 -1.3744 -0.0036 21 8 8.2918 -2.4578 -0.0048 22 8 8.3954 -0.3506 -0.0034 23 6 5.5104 -2.4775 -0.0027 24 6 4.1496 -2.4448 -0.0027 25 6 3.4815 -1.2081 -0.0018 26 7 2.1447 -1.1473 -0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6290 2.1413 -0.0004 31 1 5.2397 2.4165 -0.0008 32 1 2.9206 3.7602 0.8906 33 1 2.9206 3.7610 -0.8894 34 1 5.1757 4.7903 0.8918 35 1 5.1764 4.7915 -0.8881 36 1 3.1693 6.2471 -0.8887 37 1 3.1680 6.2464 0.8912 38 1 4.8788 10.5356 0.0026 39 1 6.2318 0.8201 -0.0011 40 1 6.0193 -3.4300 -0.0038 41 1 3.5854 -3.3657 -0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181501775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:05 Heat of formation + Delta-G solvation = 34.932610 kcal Electronic energy + Delta-G solvation = -24773.388345 eV Core-core repulsion = 21041.754552 eV Total energy + Delta-G solvation = -3731.633793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37738 -41.31771 -38.03364 -37.35655 -36.68720 -34.43772 -32.77890 -32.60153 -31.34566 -30.11440 -28.95531 -27.22596 -25.98344 -24.45703 -23.10021 -22.63718 -21.66497 -20.59639 -19.70886 -18.95389 -18.66348 -17.66130 -17.08412 -16.99547 -16.41948 -15.63105 -15.59147 -15.15389 -14.90591 -14.81702 -14.27295 -14.09812 -13.71164 -13.56959 -12.95929 -12.90881 -12.76918 -12.55467 -12.11834 -12.00933 -11.94896 -11.69959 -11.54236 -11.35816 -11.27533 -11.26960 -10.97648 -10.27059 -10.09461 -9.90293 -9.84142 -9.62749 -9.38849 -9.35877 -8.68462 -7.96744 -6.17942 -4.18226 -0.54766 0.12366 0.81980 1.23598 1.57490 2.33485 2.82970 3.19257 3.27452 3.28404 3.56922 3.73966 3.93612 3.96114 4.28271 4.31179 4.31399 4.63474 4.74667 4.92499 5.00914 5.11242 5.14147 5.18731 5.24529 5.26803 5.28188 5.41345 5.55022 5.59387 5.62975 5.64342 5.80504 6.07246 6.13508 6.18686 6.30218 6.52061 6.70271 7.00422 7.11157 7.14320 7.49836 7.60960 7.64334 8.36856 8.85514 9.42827 10.95264 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003046 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.348892 B = 9190.535397 C =11361.833352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.228 3.772 3 C -0.282 4.282 4 C 0.299 3.701 5 N -0.706 5.706 6 C 0.107 3.893 7 C -0.116 4.116 8 C -0.008 4.008 9 C -0.527 4.527 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.899 5.899 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.266 1.266 17 C -0.175 4.175 18 C 0.013 3.987 19 C -0.070 4.070 20 N 0.033 4.967 21 O -0.164 6.164 22 O -0.168 6.168 23 C -0.053 4.053 24 C -0.098 4.098 25 C 0.213 3.787 26 N -0.535 5.535 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.406 0.594 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -23.655 -0.052 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 C -0.310 4.310 4 C 0.179 3.821 5 N -0.328 5.328 6 C -0.015 4.015 7 C -0.154 4.154 8 C -0.046 4.046 9 C -0.565 4.565 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.538 5.538 13 Si 0.708 3.292 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.182 4.182 18 C -0.008 4.008 19 C -0.154 4.154 20 N 0.551 4.449 21 O -0.379 6.379 22 O -0.382 6.382 23 C -0.074 4.074 24 C -0.118 4.118 25 C 0.088 3.912 26 N -0.250 5.250 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.770 -23.946 -0.051 25.501 hybrid contribution 0.479 1.277 0.009 1.364 sum -8.292 -22.669 -0.042 24.138 Atomic orbital electron populations 1.20862 0.88285 1.04000 1.03669 1.21268 0.97067 0.87360 0.86031 1.21348 0.91926 1.00320 1.17357 1.18019 0.91926 0.85193 0.86926 1.45239 1.09458 1.03491 1.74582 1.21990 0.96381 0.81191 1.01929 1.21738 0.97559 0.93808 1.02288 1.19482 0.96450 0.92041 0.96621 1.21055 0.94354 0.89422 1.51673 0.90944 1.25036 0.97754 0.96248 0.94368 1.69902 1.34201 0.99250 1.50412 0.86769 0.85950 0.77925 0.78557 1.20208 1.21248 1.19030 1.18254 0.92583 0.93881 1.13517 1.20697 0.93860 0.97252 0.88964 1.20551 0.79386 0.96568 1.18917 1.43588 1.03548 1.00450 0.97336 1.94518 1.73167 1.16611 1.53603 1.94567 1.64744 1.24950 1.53933 1.20524 0.93765 0.97365 0.95741 1.20667 0.92293 0.97319 1.01490 1.18849 0.89762 0.91675 0.90950 1.68048 1.06921 1.28297 1.21717 0.89606 0.89991 0.90072 0.83785 0.75707 0.91156 0.91149 0.91756 0.91737 0.96286 0.96721 0.92534 0.83104 0.82761 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.14 36.01 0.37 -0.38 16 2 C 0.23 2.28 6.77 -82.61 -0.56 1.72 16 3 C -0.28 -2.90 8.97 -39.23 -0.35 -3.26 16 4 C 0.30 3.31 6.70 -83.39 -0.56 2.75 16 5 N -0.71 -7.76 5.65 -58.26 -0.33 -8.09 16 6 C 0.11 1.34 4.94 -4.04 -0.02 1.32 16 7 C -0.12 -1.89 5.27 -26.73 -0.14 -2.03 16 8 C -0.01 -0.17 4.04 -27.88 -0.11 -0.28 16 9 C -0.53 -14.12 9.66 -34.44 -0.33 -14.45 16 10 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 11 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 12 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 13 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 17 C -0.18 -1.94 5.75 -106.66 -0.61 -2.56 16 18 C 0.01 0.14 9.01 -39.57 -0.36 -0.22 16 19 C -0.07 -0.78 6.81 -80.28 -0.55 -1.33 16 20 N 0.03 0.44 4.45 33.80 0.15 0.59 16 21 O -0.16 -2.20 18.41 -29.46 -0.54 -2.74 16 22 O -0.17 -2.41 18.39 -29.46 -0.54 -2.95 16 23 C -0.05 -0.48 9.45 -39.96 -0.38 -0.86 16 24 C -0.10 -0.87 9.98 -39.47 -0.39 -1.27 16 25 C 0.21 2.35 6.60 -84.89 -0.56 1.79 16 26 N -0.54 -5.99 10.23 -7.33 -0.07 -6.07 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.14 1.31 6.85 -52.49 -0.36 0.95 16 31 H 0.41 4.10 6.68 -40.82 -0.27 3.83 16 32 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 33 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.15 1.47 6.01 -52.49 -0.32 1.15 16 40 H 0.15 1.11 7.57 -52.49 -0.40 0.71 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 351.71 15.07 5.30 5.30 Total: -1.00 -31.21 351.71 -9.65 -40.86 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.06 Total: 0.61 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -4.66 Total: -17.27 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.52 Total: -39.62 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -1.08 Total: -5.69 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.21 -9.65 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181501775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.796 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds