Wall clock time and date at job start Tue Mar 31 2020 11:05:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50709 * 1
3 3 C 1.38826 * 119.06710 * 2 1
4 4 C 1.38591 * 119.68626 * 180.02562 * 3 2 1
5 5 N 1.38645 * 121.04995 * 180.02562 * 4 3 2
6 6 C 1.46500 * 120.00377 * 359.97438 * 5 4 3
7 7 C 1.53006 * 109.46998 * 179.97438 * 6 5 4
8 8 C 1.52999 * 109.46626 * 179.97438 * 7 6 5
9 9 C 1.50706 * 109.46957 * 180.02562 * 8 7 6
10 10 H 1.07999 * 119.99816 * 0.02562 * 9 8 7
11 11 C 1.37876 * 120.00340 * 180.02562 * 9 8 7
12 12 N 1.31514 * 120.00347 * 180.02562 * 11 9 8
13 13 Si 1.86803 * 119.99775 * 359.97438 * 11 9 8
14 14 H 1.48498 * 109.46867 * 90.00546 * 13 11 9
15 15 H 1.48501 * 109.47216 * 210.00404 * 13 11 9
16 16 H 1.48499 * 109.47135 * 330.00745 * 13 11 9
17 17 C 1.41557 * 117.89033 * 0.27443 * 4 3 2
18 18 C 1.40176 * 121.36287 * 180.30312 * 17 4 3
19 19 C 1.36250 * 119.63373 * 179.72127 * 18 17 4
20 20 N 1.48023 * 119.59301 * 179.69801 * 19 18 17
21 21 O 1.21802 * 119.99944 * 180.02562 * 20 19 18
22 22 O 1.21808 * 119.99900 * 0.02562 * 20 19 18
23 23 C 1.39271 * 120.81022 * 359.71806 * 19 18 17
24 24 C 1.36128 * 121.03495 * 0.02562 * 23 19 18
25 25 C 1.40557 * 119.75600 * 359.97438 * 24 23 19
26 26 N 1.31260 * 119.06441 * 180.02562 * 2 1 3
27 27 H 1.08998 * 109.47125 * 89.99616 * 1 2 3
28 28 H 1.09001 * 109.46869 * 209.99795 * 1 2 3
29 29 H 1.09000 * 109.46750 * 329.99714 * 1 2 3
30 30 H 1.07994 * 120.16122 * 359.97438 * 3 2 1
31 31 H 0.97010 * 119.99713 * 180.02562 * 5 4 3
32 32 H 1.09000 * 109.47175 * 60.00050 * 6 5 4
33 33 H 1.09001 * 109.47297 * 299.99557 * 6 5 4
34 34 H 1.08993 * 109.46955 * 300.00226 * 7 6 5
35 35 H 1.09000 * 109.47050 * 60.00054 * 7 6 5
36 36 H 1.08993 * 109.47839 * 299.99931 * 8 7 6
37 37 H 1.09000 * 109.47160 * 60.00369 * 8 7 6
38 38 H 0.96991 * 119.99882 * 179.97438 * 12 11 9
39 39 H 1.08000 * 120.18127 * 359.46446 * 18 17 4
40 40 H 1.08000 * 119.47646 * 179.97438 * 23 19 18
41 41 H 1.08001 * 120.11798 * 179.97438 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1816 1.2134 0.0000
4 6 3.5674 1.2284 -0.0005
5 7 4.2696 2.4238 0.0000
6 6 3.5468 3.6981 0.0005
7 6 4.5499 4.8535 0.0017
8 6 3.7948 6.1842 0.0016
9 6 4.7828 7.3223 0.0021
10 1 5.8431 7.1169 0.0020
11 6 4.3331 8.6256 0.0027
12 7 5.1953 9.6187 0.0026
13 14 2.4992 8.9809 0.0021
14 1 2.0127 9.0743 1.4021
15 1 2.2440 10.2657 -0.6973
16 1 1.7829 7.8849 -0.6987
17 6 4.2430 -0.0155 -0.0071
18 6 5.6430 -0.0853 -0.0017
19 6 6.2569 -1.3017 -0.0025
20 7 7.7354 -1.3744 -0.0036
21 8 8.2918 -2.4578 -0.0048
22 8 8.3954 -0.3506 -0.0034
23 6 5.5104 -2.4775 -0.0027
24 6 4.1496 -2.4448 -0.0027
25 6 3.4815 -1.2081 -0.0018
26 7 2.1447 -1.1473 -0.0005
27 1 -0.3633 0.0001 -1.0276
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3633 0.8900 0.5139
30 1 1.6290 2.1413 -0.0004
31 1 5.2397 2.4165 -0.0008
32 1 2.9206 3.7602 0.8906
33 1 2.9206 3.7610 -0.8894
34 1 5.1757 4.7903 0.8918
35 1 5.1764 4.7915 -0.8881
36 1 3.1693 6.2471 -0.8887
37 1 3.1680 6.2464 0.8912
38 1 4.8788 10.5356 0.0026
39 1 6.2318 0.8201 -0.0011
40 1 6.0193 -3.4300 -0.0038
41 1 3.5854 -3.3657 -0.0032
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000181501775.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:05:05
Heat of formation + Delta-G solvation = 34.932610 kcal
Electronic energy + Delta-G solvation = -24773.388345 eV
Core-core repulsion = 21041.754552 eV
Total energy + Delta-G solvation = -3731.633793 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.37738 -41.31771 -38.03364 -37.35655 -36.68720 -34.43772 -32.77890 -32.60153
-31.34566 -30.11440 -28.95531 -27.22596 -25.98344 -24.45703 -23.10021 -22.63718
-21.66497 -20.59639 -19.70886 -18.95389 -18.66348 -17.66130 -17.08412 -16.99547
-16.41948 -15.63105 -15.59147 -15.15389 -14.90591 -14.81702 -14.27295 -14.09812
-13.71164 -13.56959 -12.95929 -12.90881 -12.76918 -12.55467 -12.11834 -12.00933
-11.94896 -11.69959 -11.54236 -11.35816 -11.27533 -11.26960 -10.97648 -10.27059
-10.09461 -9.90293 -9.84142 -9.62749 -9.38849 -9.35877 -8.68462 -7.96744
-6.17942 -4.18226 -0.54766 0.12366 0.81980 1.23598 1.57490 2.33485
2.82970 3.19257 3.27452 3.28404 3.56922 3.73966 3.93612 3.96114
4.28271 4.31179 4.31399 4.63474 4.74667 4.92499 5.00914 5.11242
5.14147 5.18731 5.24529 5.26803 5.28188 5.41345 5.55022 5.59387
5.62975 5.64342 5.80504 6.07246 6.13508 6.18686 6.30218 6.52061
6.70271 7.00422 7.11157 7.14320 7.49836 7.60960 7.64334 8.36856
8.85514 9.42827 10.95264
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.012711 B = 0.003046 C = 0.002464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2202.348892 B = 9190.535397 C =11361.833352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C 0.228 3.772
3 C -0.282 4.282
4 C 0.299 3.701
5 N -0.706 5.706
6 C 0.107 3.893
7 C -0.116 4.116
8 C -0.008 4.008
9 C -0.527 4.527
10 H 0.072 0.928
11 C 0.068 3.932
12 N -0.899 5.899
13 Si 0.881 3.119
14 H -0.276 1.276
15 H -0.287 1.287
16 H -0.266 1.266
17 C -0.175 4.175
18 C 0.013 3.987
19 C -0.070 4.070
20 N 0.033 4.967
21 O -0.164 6.164
22 O -0.168 6.168
23 C -0.053 4.053
24 C -0.098 4.098
25 C 0.213 3.787
26 N -0.535 5.535
27 H 0.085 0.915
28 H 0.081 0.919
29 H 0.080 0.920
30 H 0.144 0.856
31 H 0.406 0.594
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.064 0.936
35 H 0.064 0.936
36 H 0.019 0.981
37 H 0.015 0.985
38 H 0.265 0.735
39 H 0.151 0.849
40 H 0.155 0.845
41 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.578 -23.655 -0.052 24.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.083 3.917
3 C -0.310 4.310
4 C 0.179 3.821
5 N -0.328 5.328
6 C -0.015 4.015
7 C -0.154 4.154
8 C -0.046 4.046
9 C -0.565 4.565
10 H 0.091 0.909
11 C -0.134 4.134
12 N -0.538 5.538
13 Si 0.708 3.292
14 H -0.202 1.202
15 H -0.212 1.212
16 H -0.190 1.190
17 C -0.182 4.182
18 C -0.008 4.008
19 C -0.154 4.154
20 N 0.551 4.449
21 O -0.379 6.379
22 O -0.382 6.382
23 C -0.074 4.074
24 C -0.118 4.118
25 C 0.088 3.912
26 N -0.250 5.250
27 H 0.104 0.896
28 H 0.100 0.900
29 H 0.099 0.901
30 H 0.162 0.838
31 H 0.243 0.757
32 H 0.088 0.912
33 H 0.089 0.911
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.037 0.963
37 H 0.033 0.967
38 H 0.075 0.925
39 H 0.169 0.831
40 H 0.172 0.828
41 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -8.770 -23.946 -0.051 25.501
hybrid contribution 0.479 1.277 0.009 1.364
sum -8.292 -22.669 -0.042 24.138
Atomic orbital electron populations
1.20862 0.88285 1.04000 1.03669 1.21268 0.97067 0.87360 0.86031
1.21348 0.91926 1.00320 1.17357 1.18019 0.91926 0.85193 0.86926
1.45239 1.09458 1.03491 1.74582 1.21990 0.96381 0.81191 1.01929
1.21738 0.97559 0.93808 1.02288 1.19482 0.96450 0.92041 0.96621
1.21055 0.94354 0.89422 1.51673 0.90944 1.25036 0.97754 0.96248
0.94368 1.69902 1.34201 0.99250 1.50412 0.86769 0.85950 0.77925
0.78557 1.20208 1.21248 1.19030 1.18254 0.92583 0.93881 1.13517
1.20697 0.93860 0.97252 0.88964 1.20551 0.79386 0.96568 1.18917
1.43588 1.03548 1.00450 0.97336 1.94518 1.73167 1.16611 1.53603
1.94567 1.64744 1.24950 1.53933 1.20524 0.93765 0.97365 0.95741
1.20667 0.92293 0.97319 1.01490 1.18849 0.89762 0.91675 0.90950
1.68048 1.06921 1.28297 1.21717 0.89606 0.89991 0.90072 0.83785
0.75707 0.91156 0.91149 0.91756 0.91737 0.96286 0.96721 0.92534
0.83104 0.82761 0.82693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.75 10.14 36.01 0.37 -0.38 16
2 C 0.23 2.28 6.77 -82.61 -0.56 1.72 16
3 C -0.28 -2.90 8.97 -39.23 -0.35 -3.26 16
4 C 0.30 3.31 6.70 -83.39 -0.56 2.75 16
5 N -0.71 -7.76 5.65 -58.26 -0.33 -8.09 16
6 C 0.11 1.34 4.94 -4.04 -0.02 1.32 16
7 C -0.12 -1.89 5.27 -26.73 -0.14 -2.03 16
8 C -0.01 -0.17 4.04 -27.88 -0.11 -0.28 16
9 C -0.53 -14.12 9.66 -34.44 -0.33 -14.45 16
10 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16
11 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16
12 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16
13 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16
14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
16 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16
17 C -0.18 -1.94 5.75 -106.66 -0.61 -2.56 16
18 C 0.01 0.14 9.01 -39.57 -0.36 -0.22 16
19 C -0.07 -0.78 6.81 -80.28 -0.55 -1.33 16
20 N 0.03 0.44 4.45 33.80 0.15 0.59 16
21 O -0.16 -2.20 18.41 -29.46 -0.54 -2.74 16
22 O -0.17 -2.41 18.39 -29.46 -0.54 -2.95 16
23 C -0.05 -0.48 9.45 -39.96 -0.38 -0.86 16
24 C -0.10 -0.87 9.98 -39.47 -0.39 -1.27 16
25 C 0.21 2.35 6.60 -84.89 -0.56 1.79 16
26 N -0.54 -5.99 10.23 -7.33 -0.07 -6.07 16
27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16
30 H 0.14 1.31 6.85 -52.49 -0.36 0.95 16
31 H 0.41 4.10 6.68 -40.82 -0.27 3.83 16
32 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16
33 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16
34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
36 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16
37 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16
38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
39 H 0.15 1.47 6.01 -52.49 -0.32 1.15 16
40 H 0.15 1.11 7.57 -52.49 -0.40 0.71 16
41 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16
LS Contribution 351.71 15.07 5.30 5.30
Total: -1.00 -31.21 351.71 -9.65 -40.86
By element:
Atomic # 1 Polarization: 5.67 SS G_CDS: -5.06 Total: 0.61 kcal
Atomic # 6 Polarization: -12.61 SS G_CDS: -4.66 Total: -17.27 kcal
Atomic # 7 Polarization: -40.14 SS G_CDS: 0.52 Total: -39.62 kcal
Atomic # 8 Polarization: -4.60 SS G_CDS: -1.08 Total: -5.69 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.21 -9.65 -40.86 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000181501775.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.796 kcal
(2) G-P(sol) polarization free energy of solvation -31.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds