Wall clock time and date at job start Tue Mar 31 2020 11:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 120.00018 * 2 1 4 4 C 1.38210 * 119.99906 * 179.72235 * 3 2 1 5 5 C 1.38265 * 119.99879 * 0.50653 * 4 3 2 6 6 C 1.50706 * 119.99904 * 179.76549 * 5 4 3 7 7 N 1.46502 * 109.47064 * 269.72717 * 6 5 4 8 8 C 1.39925 * 120.00021 * 180.02562 * 7 6 5 9 9 C 1.38720 * 120.07752 * 359.97438 * 8 7 6 10 10 C 1.38207 * 120.01459 * 179.74295 * 9 8 7 11 11 C 1.38529 * 120.17940 * 0.23006 * 10 9 8 12 12 F 1.35101 * 119.92258 * 179.97438 * 11 10 9 13 13 C 1.38359 * 120.15915 * 0.02562 * 11 10 9 14 14 C 1.38732 * 119.97740 * 0.02562 * 13 11 10 15 15 O 1.35789 * 120.08501 * 179.97438 * 14 13 11 16 16 C 1.34806 * 117.00236 * 354.39746 * 15 14 13 17 17 H 1.07997 * 119.99616 * 5.06634 * 16 15 14 18 18 C 1.38625 * 120.00093 * 185.06433 * 16 15 14 19 19 N 1.31580 * 120.00152 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99883 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47154 * 90.00199 * 20 18 16 22 22 H 1.48504 * 109.47290 * 209.99955 * 20 18 16 23 23 H 1.48500 * 109.47452 * 329.99883 * 20 18 16 24 24 C 1.38207 * 119.99972 * 359.49465 * 5 4 3 25 25 C 1.38217 * 119.99811 * 179.97438 * 2 1 3 26 26 C 1.50702 * 120.00175 * 0.02562 * 25 2 1 27 27 H 1.09000 * 109.47470 * 270.02042 * 1 2 3 28 28 H 1.08999 * 109.47401 * 30.02426 * 1 2 3 29 29 H 1.09004 * 109.46848 * 150.02358 * 1 2 3 30 30 H 1.07996 * 120.00064 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.00289 * 180.27455 * 4 3 2 32 32 H 1.08998 * 109.46945 * 149.72373 * 6 5 4 33 33 H 1.09004 * 109.47091 * 29.72487 * 6 5 4 34 34 H 0.97005 * 119.99773 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.98908 * 0.02562 * 9 8 7 36 36 H 1.08003 * 119.91065 * 180.25204 * 10 9 8 37 37 H 1.07994 * 120.01363 * 179.97438 * 13 11 10 38 38 H 0.97000 * 120.00127 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.99991 * 180.27932 * 24 5 4 40 40 H 1.08997 * 109.46913 * 270.02078 * 26 25 2 41 41 H 1.09005 * 109.46992 * 30.01796 * 26 25 2 42 42 H 1.08998 * 109.47154 * 150.01807 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1973 0.0058 5 6 4.2717 -0.0001 0.0010 6 6 5.7787 -0.0001 0.0020 7 7 6.2679 -0.0007 -1.3789 8 6 7.6438 -0.0013 -1.6337 9 6 8.5460 -0.0009 -0.5800 10 6 9.9047 -0.0069 -0.8331 11 6 10.3699 -0.0085 -2.1380 12 9 11.6992 -0.0139 -2.3795 13 6 9.4766 -0.0036 -3.1945 14 6 8.1114 0.0035 -2.9479 15 8 7.2327 0.0088 -3.9832 16 6 7.7486 0.1242 -5.2232 17 1 8.8193 0.1246 -5.3647 18 6 6.9049 0.2421 -6.3168 19 7 5.6004 0.2420 -6.1444 20 14 7.6198 0.4026 -8.0351 21 1 7.7923 -0.9481 -8.6276 22 1 6.6977 1.2008 -8.8824 23 1 8.9378 1.0828 -7.9613 24 6 3.5806 -1.1970 0.0010 25 6 2.1980 -1.1970 0.0005 26 6 1.4445 -2.5021 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0103 32 1 6.1417 -0.8899 0.5165 33 1 6.1417 0.8901 0.5157 34 1 5.6380 -0.0013 -2.1166 35 1 8.1865 -0.0005 0.4384 36 1 10.6056 -0.0107 -0.0115 37 1 9.8419 -0.0045 -4.2108 38 1 5.0100 0.3249 -6.9095 39 1 4.1206 -2.1323 0.0018 40 1 1.2622 -2.8163 1.0282 41 1 0.4924 -2.3720 -0.5140 42 1 2.0339 -3.2620 -0.5126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181544001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:44 Heat of formation + Delta-G solvation = -30.034722 kcal Electronic energy + Delta-G solvation = -25041.147223 eV Core-core repulsion = 21286.776273 eV Total energy + Delta-G solvation = -3754.370950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.03617 -39.75996 -39.08300 -36.65472 -35.22498 -33.04292 -32.29238 -32.11371 -29.26202 -29.05855 -27.37048 -26.48841 -25.37774 -24.21982 -22.11809 -21.74760 -21.03259 -19.96102 -18.16506 -17.59435 -16.36616 -15.97287 -15.89944 -15.44273 -15.13193 -14.82468 -14.65618 -14.38019 -14.20652 -13.99243 -13.83560 -13.45506 -13.27878 -13.15354 -13.04120 -12.87954 -12.48192 -12.40609 -12.09489 -12.02145 -11.91073 -11.66976 -11.36558 -11.26648 -10.94084 -10.83898 -10.76704 -10.54202 -10.39262 -9.57669 -9.23699 -8.84697 -8.70663 -8.45937 -7.73078 -6.47577 -6.42681 -4.02467 1.30140 1.44566 2.13429 2.25186 3.12728 3.14361 3.18910 3.63073 3.94809 4.31425 4.48044 4.72756 4.76489 4.89105 4.98738 5.00894 5.08918 5.11037 5.29839 5.31579 5.40696 5.53257 5.55436 5.60219 5.61109 5.71977 5.74298 5.77913 5.84370 5.85623 6.12547 6.15798 6.20668 6.43678 6.47047 6.59846 6.64504 6.69662 6.82641 7.03721 7.05762 7.11587 7.26195 7.63173 7.93180 8.04974 8.43347 8.99151 9.65456 10.70563 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.003946 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.220520 B = 7094.257885 C = 9279.738779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.099 4.099 6 C 0.174 3.826 7 N -0.741 5.741 8 C 0.154 3.846 9 C -0.147 4.147 10 C -0.195 4.195 11 C 0.085 3.915 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.122 3.878 15 O -0.176 6.176 16 C -0.387 4.387 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.939 3.061 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.095 4.095 25 C -0.091 4.091 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 -1.191 12.988 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.118 4.118 5 C -0.100 4.100 6 C 0.050 3.950 7 N -0.375 5.375 8 C 0.052 3.948 9 C -0.171 4.171 10 C -0.215 4.215 11 C 0.065 3.935 12 F -0.137 7.137 13 C -0.263 4.263 14 C 0.067 3.933 15 O -0.080 6.080 16 C -0.463 4.463 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.497 5.497 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.114 4.114 25 C -0.091 4.091 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.246 0.754 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.155 0.845 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.788 -1.189 12.995 15.196 hybrid contribution 0.534 0.161 -1.258 1.376 sum -7.254 -1.029 11.736 13.836 Atomic orbital electron populations 1.20851 0.91507 1.02885 1.02046 1.19758 0.95858 0.92751 1.00236 1.20973 0.94137 0.97370 1.01294 1.21060 0.94097 0.97686 0.99007 1.19866 0.95254 0.93339 1.01513 1.20023 0.88812 1.00982 0.85216 1.44375 1.03263 1.83951 1.05954 1.17107 0.84275 1.03043 0.90334 1.19923 0.91534 1.08986 0.96666 1.20284 0.95490 1.11480 0.94288 1.17231 0.76379 1.06255 0.93675 1.91377 1.32238 1.94612 1.95463 1.20788 0.92241 1.13974 0.99275 1.18596 0.88709 0.98346 0.87695 1.83897 1.31605 1.79362 1.13109 1.21290 0.93279 1.51886 0.79844 0.89107 1.25239 0.95171 0.96566 0.99404 1.70032 1.02066 1.46058 1.31592 0.85728 0.78762 0.78686 0.80405 1.19891 1.20290 1.19147 1.20947 0.93360 0.97739 0.99317 1.19720 0.93635 0.94873 1.00915 1.20842 1.00153 0.94213 1.02039 0.91365 0.91662 0.91185 0.86147 0.85925 0.92262 0.92229 0.75370 0.86166 0.86561 0.84473 0.92081 0.85945 0.91387 0.91244 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 36.01 0.35 -0.69 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 4 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 5 C -0.10 -1.38 5.25 -104.62 -0.55 -1.93 16 6 C 0.17 2.50 5.04 -5.19 -0.03 2.47 16 7 N -0.74 -13.73 5.72 -59.63 -0.34 -14.07 16 8 C 0.15 3.14 6.67 -83.52 -0.56 2.58 16 9 C -0.15 -2.62 9.31 -39.41 -0.37 -2.99 16 10 C -0.20 -3.56 10.02 -39.49 -0.40 -3.95 16 11 C 0.09 1.76 7.29 -39.43 -0.29 1.47 16 12 F -0.16 -3.15 17.26 2.25 0.04 -3.11 16 13 C -0.24 -5.48 9.14 -39.35 -0.36 -5.84 16 14 C 0.12 2.90 6.67 -38.93 -0.26 2.64 16 15 O -0.18 -4.81 9.00 -0.01 0.00 -4.81 16 16 C -0.39 -10.67 9.49 30.88 0.29 -10.37 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 20 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.10 -1.27 9.36 -39.59 -0.37 -1.64 16 25 C -0.09 -1.12 5.88 -104.62 -0.62 -1.74 16 26 C -0.12 -1.11 9.60 36.01 0.35 -0.77 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.58 5.95 -51.93 -0.31 0.27 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.06 0.79 7.89 -51.93 -0.41 0.38 16 34 H 0.41 8.56 7.83 -40.82 -0.32 8.24 16 35 H 0.12 1.77 6.73 -52.49 -0.35 1.42 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 42 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -29.90 356.72 -8.66 -38.57 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.19 Total: 11.41 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -4.28 Total: -24.96 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.42 Total: -38.00 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.00 Total: -4.81 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.90 -8.66 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181544001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.531 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds