Wall clock time and date at job start Tue Mar 31 2020 10:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38131 * 119.94707 * 179.69741 * 13 12 11 15 15 C 1.38290 * 120.04957 * 0.59675 * 14 13 12 16 16 C 1.38250 * 120.11062 * 359.67603 * 15 14 13 17 17 C 1.50704 * 119.96871 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.46964 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47450 * 299.99608 * 20 19 18 22 22 F 1.39902 * 109.47449 * 60.00365 * 20 19 18 23 23 C 1.53002 * 109.46947 * 179.97438 * 20 19 18 24 24 O 1.42907 * 109.46938 * 60.00253 * 23 20 19 25 25 C 1.38162 * 120.05723 * 0.02573 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07993 * 119.97567 * 180.29505 * 14 13 12 33 33 H 1.07997 * 119.94208 * 179.70200 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.08999 * 109.47272 * 179.97438 * 23 20 19 40 40 H 1.09000 * 109.47590 * 300.00324 * 23 20 19 41 41 H 0.96703 * 113.99883 * 179.97438 * 24 23 20 42 42 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0007 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0023 18 7 1.4933 -10.2133 -1.3875 19 6 0.8280 -11.5224 -1.4272 20 6 0.6157 -11.9425 -2.8829 21 9 -0.1829 -10.9938 -3.5305 22 9 1.8538 -12.0289 -3.5287 23 6 -0.0767 -13.3063 -2.9243 24 8 -1.3413 -13.2186 -2.2645 25 6 1.6421 -7.2759 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4850 -7.0732 -0.0004 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5116 35 1 0.7564 -9.6981 0.5113 36 1 2.3602 -10.2320 -1.9034 37 1 1.4505 -12.2617 -0.9230 38 1 -0.1363 -11.4552 -0.9236 39 1 -0.2283 -13.6055 -3.9614 40 1 0.5458 -14.0453 -2.4199 41 1 -1.8372 -14.0488 -2.2528 42 1 0.5637 -7.3340 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183878479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:48 Heat of formation + Delta-G solvation = -172.684450 kcal Electronic energy + Delta-G solvation = -25106.212214 eV Core-core repulsion = 20914.886283 eV Total energy + Delta-G solvation = -4191.325931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.26603 -47.23741 -39.80619 -37.85015 -37.49879 -35.97199 -33.35921 -32.06821 -30.83239 -30.10368 -29.11087 -26.76369 -25.06415 -24.07503 -22.36382 -21.98146 -21.59138 -20.16336 -18.69328 -17.93471 -17.42876 -17.09726 -16.70676 -16.20886 -15.94450 -15.61091 -15.33093 -15.24061 -15.11070 -14.60084 -14.49346 -14.17092 -13.79415 -13.70998 -13.54380 -13.49836 -12.96006 -12.68864 -12.60450 -12.46128 -12.30076 -12.11575 -11.51229 -11.39108 -11.24900 -11.07844 -10.88971 -10.84354 -10.66552 -10.41806 -9.83977 -9.63632 -9.26302 -8.91115 -8.66467 -8.43245 -7.82585 -6.08382 -4.12901 1.43577 1.68864 2.88594 3.28021 3.34906 3.38573 3.41979 3.66796 3.81441 3.85363 4.01374 4.30025 4.33764 4.42456 4.62217 4.70431 4.78672 4.94799 5.08387 5.13470 5.27765 5.28008 5.30390 5.39259 5.47620 5.71458 5.85167 6.06194 6.08525 6.19963 6.44338 6.56109 6.59349 6.66119 6.75652 6.82748 6.96637 6.99794 7.53653 7.66951 7.83788 8.09396 8.26166 8.92935 9.51292 11.03246 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.002078 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.920376 B =13473.570383 C =14190.490207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.166 4.166 16 C -0.055 4.055 17 C 0.106 3.894 18 N -0.680 5.680 19 C 0.024 3.976 20 C 0.297 3.703 21 F -0.179 7.179 22 F -0.195 7.195 23 C 0.040 3.960 24 O -0.555 6.555 25 C -0.136 4.136 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.349 0.651 37 H 0.057 0.943 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.392 0.608 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -30.944 -2.506 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.184 4.184 16 C -0.055 4.055 17 C -0.022 4.022 18 N -0.312 5.312 19 C -0.106 4.106 20 C 0.260 3.740 21 F -0.160 7.160 22 F -0.176 7.176 23 C -0.040 4.040 24 O -0.362 6.362 25 C -0.156 4.156 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.168 0.832 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.807 -29.792 -2.521 30.030 hybrid contribution 1.355 -0.049 -0.047 1.357 sum 4.162 -29.840 -2.568 30.238 Atomic orbital electron populations 1.69992 1.06091 1.26842 1.49793 1.25001 0.94916 0.99403 0.94958 0.86427 0.79965 0.83267 0.77703 1.19656 1.20831 1.20859 1.21008 0.93069 0.90210 1.52076 0.92325 1.19131 0.94196 0.89020 0.98918 1.23328 0.97079 0.80859 0.99616 1.86182 1.36514 1.13181 1.86908 1.19197 0.90090 0.87580 0.93357 1.21409 0.93254 0.99851 1.08284 1.20838 0.99361 0.91872 0.97823 1.20764 0.93682 0.97457 1.06545 1.19312 0.93080 0.93616 0.99509 1.20837 1.00133 0.92668 0.88557 1.60360 1.30469 1.25992 1.14357 1.22911 1.02965 0.91788 0.92967 1.20901 0.75910 0.87709 0.89448 1.93084 1.73301 1.66557 1.83038 1.93021 1.43983 1.96637 1.83988 1.22943 0.87094 0.94761 0.99169 1.86474 1.30730 1.39519 1.79461 1.20274 1.00390 0.89123 1.05770 0.92764 0.95345 0.95376 0.93157 0.93134 0.85222 0.86186 0.86782 0.93973 0.89612 0.83207 0.92456 0.86925 0.90835 0.90428 0.75855 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.43 4.68 37.16 0.17 1.61 16 11 O -0.31 -6.71 10.14 -19.43 -0.20 -6.91 16 12 C 0.14 2.61 6.69 -39.22 -0.26 2.35 16 13 C -0.21 -3.35 9.04 -39.43 -0.36 -3.71 16 14 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 15 C -0.17 -2.01 9.70 -39.56 -0.38 -2.40 16 16 C -0.05 -0.71 5.39 -104.64 -0.56 -1.27 16 17 C 0.11 1.07 5.81 -4.98 -0.03 1.04 16 18 N -0.68 -7.11 6.41 -115.06 -0.74 -7.85 16 19 C 0.02 0.20 5.08 -3.83 -0.02 0.18 16 20 C 0.30 2.62 2.01 -26.73 -0.05 2.57 16 21 F -0.18 -2.25 16.93 2.25 0.04 -2.21 16 22 F -0.20 -1.85 16.53 2.25 0.04 -1.82 16 23 C 0.04 0.21 6.69 37.16 0.25 0.46 16 24 O -0.56 -3.13 12.93 -35.23 -0.46 -3.59 16 25 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.05 7.68 -51.93 -0.40 0.65 16 30 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 31 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.35 3.60 8.25 -39.29 -0.32 3.27 16 37 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.11 0.96 7.68 -51.93 -0.40 0.56 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.39 0.23 9.12 45.56 0.42 0.64 16 42 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -33.72 365.53 -7.87 -41.59 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.20 Total: 1.06 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.58 Total: -16.23 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.00 Total: -33.89 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.65 Total: -10.50 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.72 -7.87 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183878479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.095 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds