Wall clock time and date at job start Tue Mar 31 2020 10:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38131 * 119.94707 * 179.69741 * 13 12 11 15 15 C 1.38290 * 120.04957 * 0.59675 * 14 13 12 16 16 C 1.38250 * 120.11062 * 359.67603 * 15 14 13 17 17 C 1.50704 * 119.96871 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.46964 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47450 * 299.99608 * 20 19 18 22 22 F 1.39902 * 109.47449 * 60.00365 * 20 19 18 23 23 C 1.53002 * 109.46947 * 179.97438 * 20 19 18 24 24 O 1.42907 * 109.46938 * 60.00253 * 23 20 19 25 25 C 1.38162 * 120.05723 * 0.02573 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07993 * 119.97567 * 180.29505 * 14 13 12 33 33 H 1.07997 * 119.94208 * 179.70200 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.08999 * 109.47272 * 179.97438 * 23 20 19 40 40 H 1.09000 * 109.47590 * 300.00324 * 23 20 19 41 41 H 0.96703 * 113.99883 * 179.97438 * 24 23 20 42 42 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0007 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0023 18 7 1.4933 -10.2133 -1.3875 19 6 0.8280 -11.5224 -1.4272 20 6 0.6157 -11.9425 -2.8829 21 9 -0.1829 -10.9938 -3.5305 22 9 1.8538 -12.0289 -3.5287 23 6 -0.0767 -13.3063 -2.9243 24 8 -1.3413 -13.2186 -2.2645 25 6 1.6421 -7.2759 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4850 -7.0732 -0.0004 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5116 35 1 0.7564 -9.6981 0.5113 36 1 2.3602 -10.2320 -1.9034 37 1 1.4505 -12.2617 -0.9230 38 1 -0.1363 -11.4552 -0.9236 39 1 -0.2283 -13.6055 -3.9614 40 1 0.5458 -14.0453 -2.4199 41 1 -1.8372 -14.0488 -2.2528 42 1 0.5637 -7.3340 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183878479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:48 Heat of formation + Delta-G solvation = -197.446535 kcal Electronic energy + Delta-G solvation = -25107.285979 eV Core-core repulsion = 20914.886283 eV Total energy + Delta-G solvation = -4192.399696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.97879 -47.99735 -41.09059 -38.97284 -38.04564 -36.84102 -35.47167 -32.93893 -32.58746 -31.03357 -30.44395 -27.57032 -26.90618 -24.98196 -23.55502 -23.26198 -22.61150 -21.55698 -19.20761 -19.19315 -18.40650 -18.03295 -17.72129 -17.31392 -17.05456 -16.95011 -16.88800 -16.47169 -16.13401 -15.74864 -15.21693 -15.05171 -14.70370 -14.64130 -14.35418 -14.35189 -14.25759 -14.22217 -14.07808 -13.58692 -13.16406 -13.12517 -13.02681 -12.81966 -12.63062 -12.56248 -12.43156 -11.93095 -11.65970 -11.58948 -11.55493 -11.36955 -11.19433 -10.64167 -9.87094 -9.52544 -9.10368 -8.27773 -6.41774 0.31961 0.52568 1.40089 1.41523 1.55021 2.26292 2.41897 2.50646 2.66838 2.99900 3.06460 3.11581 3.32350 3.71435 3.76908 3.89839 3.92351 4.12273 4.22061 4.25106 4.25830 4.30358 4.34785 4.40862 4.52034 4.54956 4.63725 4.71836 4.75219 4.83832 5.09258 5.30222 5.43048 5.44771 5.51111 5.58310 5.66857 5.74439 5.92723 6.06405 6.22899 6.56907 6.73210 6.74507 7.28380 8.85734 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.002078 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.920376 B =13473.570383 C =14190.490207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.344 6.344 12 C 0.104 3.896 13 C -0.221 4.221 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.049 4.049 17 C 0.111 3.889 18 N -0.702 5.702 19 C 0.028 3.972 20 C 0.282 3.718 21 F -0.208 7.208 22 F -0.201 7.201 23 C 0.047 3.953 24 O -0.577 6.577 25 C -0.153 4.153 26 H 0.267 0.733 27 H -0.004 1.004 28 H -0.002 1.002 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.349 0.651 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.413 0.587 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -33.154 -2.163 33.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.259 6.259 12 C 0.059 3.941 13 C -0.240 4.240 14 C -0.095 4.095 15 C -0.169 4.169 16 C -0.050 4.050 17 C -0.017 4.017 18 N -0.334 5.334 19 C -0.102 4.102 20 C 0.245 3.755 21 F -0.190 7.190 22 F -0.182 7.182 23 C -0.033 4.033 24 O -0.387 6.387 25 C -0.172 4.172 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.266 0.734 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.403 -32.053 -2.177 32.578 hybrid contribution 0.528 0.444 -0.160 0.709 sum 5.932 -31.609 -2.337 32.245 Atomic orbital electron populations 1.70139 1.08098 1.28197 1.50644 1.26089 0.95869 1.03825 0.94147 0.85196 0.79022 0.77688 0.77896 1.18057 1.20224 1.20148 1.21421 0.93835 0.90944 1.52075 0.91051 1.18976 0.94577 0.91505 0.95929 1.22851 0.95376 0.80243 1.00431 1.86087 1.37594 1.13843 1.88331 1.19536 0.91217 0.86818 0.96571 1.21523 0.92442 1.01116 1.08963 1.21242 1.00902 0.91135 0.96271 1.21241 0.93441 0.98590 1.03613 1.19667 0.93718 0.93869 0.97740 1.20832 1.00449 0.91586 0.88837 1.60284 1.30768 1.27847 1.14535 1.22932 1.02999 0.91464 0.92790 1.21461 0.75736 0.89004 0.89302 1.93021 1.74177 1.68071 1.83696 1.92999 1.44370 1.96707 1.84148 1.22929 0.87314 0.92874 1.00149 1.86422 1.31225 1.41581 1.79519 1.20422 1.00363 0.89627 1.06808 0.92420 0.98526 0.98318 0.92085 0.92353 0.85535 0.82925 0.82808 0.90851 0.89831 0.83170 0.89342 0.87504 0.90178 0.87216 0.73439 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -31.53 9.11 25.60 0.23 -31.30 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.55 5.34 29.85 0.16 1.71 16 10 C 0.09 3.92 4.68 71.98 0.34 4.26 16 11 O -0.34 -15.59 10.14 -92.43 -0.94 -16.53 16 12 C 0.10 3.88 6.69 22.50 0.15 4.03 16 13 C -0.22 -7.01 9.04 22.37 0.20 -6.80 16 14 C -0.08 -1.84 10.04 22.26 0.22 -1.62 16 15 C -0.15 -3.12 9.70 22.29 0.22 -2.91 16 16 C -0.05 -1.19 5.39 -19.88 -0.11 -1.30 16 17 C 0.11 1.96 5.81 85.56 0.50 2.46 16 18 N -0.70 -13.45 6.41 -517.94 -3.32 -16.78 16 19 C 0.03 0.40 5.08 86.30 0.44 0.84 16 20 C 0.28 4.59 2.01 30.59 0.06 4.65 16 21 F -0.21 -5.28 16.93 44.97 0.76 -4.52 16 22 F -0.20 -3.52 16.53 44.97 0.74 -2.77 16 23 C 0.05 0.39 6.69 71.98 0.48 0.87 16 24 O -0.58 -5.51 12.93 -148.98 -1.93 -7.43 16 25 C -0.15 -4.96 9.64 22.36 0.22 -4.74 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 2.62 7.68 -2.39 -0.02 2.60 16 30 H 0.06 2.54 7.65 -2.39 -0.02 2.52 16 31 H 0.13 3.97 6.30 -2.91 -0.02 3.96 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.35 6.46 8.25 -89.69 -0.74 5.72 16 37 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.11 1.66 7.68 -2.39 -0.02 1.64 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.41 -0.34 9.12 -74.06 -0.68 -1.02 16 42 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -76.92 365.53 0.83 -76.08 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -0.37 Total: 12.68 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 3.57 Total: -29.46 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -3.04 Total: -74.38 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -2.86 Total: -23.96 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 1.50 Total: -7.30 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.92 0.83 -76.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183878479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.366 kcal (2) G-P(sol) polarization free energy of solvation -76.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds