Wall clock time and date at job start Tue Mar 31 2020 10:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00522 * 2 1 4 4 H 1.48501 * 109.47082 * 270.00217 * 3 2 1 5 5 H 1.48501 * 109.46849 * 29.99811 * 3 2 1 6 6 H 1.48504 * 109.47064 * 149.99683 * 3 2 1 7 7 C 1.37881 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99489 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00366 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47189 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99881 * 269.99849 * 10 9 7 12 12 C 1.50697 * 109.47225 * 269.99884 * 11 10 9 13 13 C 1.34518 * 125.78713 * 89.72112 * 12 11 10 14 14 C 1.41385 * 106.84224 * 179.88734 * 13 12 11 15 15 C 1.34518 * 106.83641 * 0.37174 * 14 13 12 16 16 O 1.34297 * 108.42323 * 359.77138 * 15 14 13 17 17 C 1.34779 * 119.99926 * 90.00366 * 10 9 7 18 18 O 1.21284 * 119.99525 * 179.97438 * 17 10 9 19 19 C 1.50693 * 120.00203 * 359.97438 * 17 10 9 20 20 C 1.52999 * 109.47352 * 180.02562 * 19 17 10 21 21 C 1.50698 * 109.47164 * 179.97438 * 20 19 17 22 22 C 1.38624 * 120.44417 * 124.99635 * 21 20 19 23 23 C 1.38574 * 118.39673 * 179.70022 * 22 21 20 24 24 N 1.32345 * 119.10916 * 0.28037 * 23 22 21 25 25 C 1.31789 * 120.81651 * 359.97438 * 24 23 22 26 26 N 1.31809 * 121.75220 * 0.02562 * 25 24 23 27 27 H 0.97003 * 119.99727 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46881 * 60.00154 * 9 7 2 29 29 H 1.08998 * 109.46945 * 300.00354 * 9 7 2 30 30 H 1.08998 * 109.46820 * 30.00415 * 11 10 9 31 31 H 1.08997 * 109.46703 * 150.00083 * 11 10 9 32 32 H 1.07999 * 126.57865 * 0.02562 * 13 12 11 33 33 H 1.07997 * 126.57837 * 180.15958 * 14 13 12 34 34 H 1.07998 * 125.78372 * 179.74832 * 15 14 13 35 35 H 1.09003 * 109.47073 * 59.99726 * 19 17 10 36 36 H 1.09005 * 109.47163 * 300.00108 * 19 17 10 37 37 H 1.08995 * 109.47163 * 59.99700 * 20 19 17 38 38 H 1.08995 * 109.46907 * 299.99945 * 20 19 17 39 39 H 1.08002 * 120.80485 * 359.97438 * 22 21 20 40 40 H 1.08001 * 120.45088 * 180.29937 * 23 22 21 41 41 H 1.08002 * 119.12276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2443 -3.2658 1.2689 12 6 5.6678 -3.0290 1.7033 13 6 6.0969 -2.0113 2.4712 14 6 7.4917 -2.1788 2.6312 15 6 7.8327 -3.2842 1.9447 16 8 6.7240 -3.7949 1.3847 17 6 4.2239 -3.2110 -1.1671 18 8 4.6285 -4.3544 -1.1669 19 6 3.9718 -2.5011 -2.4722 20 6 4.3023 -3.4389 -3.6351 21 6 4.0496 -2.7292 -4.9402 22 6 5.0524 -2.6315 -5.8923 23 6 4.7718 -1.9751 -7.0800 24 7 3.5657 -1.4617 -7.2626 25 6 2.6383 -1.5695 -6.3325 26 7 2.8691 -2.1866 -5.1909 27 1 -0.4850 0.8401 0.0004 28 1 3.8751 -0.6798 0.8895 29 1 3.8744 -0.6810 -0.8905 30 1 3.5638 -2.8814 2.0286 31 1 4.0772 -4.3350 1.1388 32 1 5.4918 -1.2196 2.8876 33 1 8.1563 -1.5397 3.1936 34 1 8.8291 -3.6915 1.8581 35 1 4.6017 -1.6134 -2.5305 36 1 2.9237 -2.2073 -2.5295 37 1 3.6721 -4.3263 -3.5765 38 1 5.3502 -3.7331 -3.5780 39 1 6.0275 -3.0605 -5.7146 40 1 5.5271 -1.8839 -7.8466 41 1 1.6634 -1.1399 -6.5101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191220438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:53 Heat of formation + Delta-G solvation = 9.459360 kcal Electronic energy + Delta-G solvation = -25677.784860 eV Core-core repulsion = 21945.046464 eV Total energy + Delta-G solvation = -3732.738396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45124 -41.97680 -40.80061 -37.06618 -35.98665 -34.66724 -33.87900 -33.75208 -32.54330 -31.44598 -29.70044 -27.71107 -25.98072 -25.27425 -24.45425 -23.06210 -22.58674 -21.51896 -20.00683 -19.16846 -18.56478 -18.34594 -18.12717 -17.44405 -17.28608 -16.63149 -16.55510 -16.33005 -16.00778 -15.77704 -15.46574 -14.94183 -14.63636 -14.46003 -14.13228 -13.99182 -13.75310 -13.65212 -13.56273 -13.52335 -13.19028 -12.96794 -12.58084 -12.43770 -12.24792 -12.09285 -11.76920 -11.70945 -11.54455 -10.93138 -10.80876 -10.75749 -10.51101 -10.17853 -9.66880 -9.39259 -8.29459 -6.36503 -0.05093 0.12782 0.74230 1.37983 1.39240 1.48019 1.62064 1.68817 2.15692 2.32984 2.39214 2.82295 3.04596 3.08004 3.29413 3.46708 3.74767 3.85017 3.99857 4.08323 4.16533 4.17536 4.21875 4.26653 4.38341 4.53850 4.57721 4.64438 4.66512 4.82328 4.83460 4.95020 4.97452 5.04264 5.11219 5.20597 5.42856 5.46877 5.54697 5.64881 6.08080 6.15619 6.26593 6.52735 6.69585 7.14933 7.17916 7.30746 8.86709 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004929 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.618803 B = 5679.769456 C = 7826.178097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.538 4.538 8 H 0.035 0.965 9 C 0.221 3.779 10 N -0.592 5.592 11 C 0.194 3.806 12 C -0.044 4.044 13 C -0.205 4.205 14 C -0.223 4.223 15 C -0.043 4.043 16 O -0.190 6.190 17 C 0.517 3.483 18 O -0.579 6.579 19 C -0.120 4.120 20 C -0.046 4.046 21 C 0.163 3.837 22 C -0.215 4.215 23 C 0.146 3.854 24 N -0.542 5.542 25 C 0.284 3.716 26 N -0.546 5.546 27 H 0.268 0.732 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.207 0.793 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.879 -2.120 -5.423 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.175 4.175 3 Si 0.756 3.244 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.160 1.160 7 C -0.577 4.577 8 H 0.053 0.947 9 C 0.099 3.901 10 N -0.322 5.322 11 C 0.071 3.929 12 C -0.095 4.095 13 C -0.225 4.225 14 C -0.242 4.242 15 C -0.110 4.110 16 O -0.086 6.086 17 C 0.307 3.693 18 O -0.461 6.461 19 C -0.160 4.160 20 C -0.084 4.084 21 C 0.018 3.982 22 C -0.236 4.236 23 C -0.019 4.019 24 N -0.257 5.257 25 C -0.003 4.003 26 N -0.261 5.261 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.191 0.809 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.198 0.802 40 H 0.224 0.776 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 15.997 -2.456 -5.748 17.175 hybrid contribution 0.125 0.634 0.499 0.817 sum 16.123 -1.822 -5.249 17.053 Atomic orbital electron populations 1.70040 1.08271 1.28268 1.51212 1.25694 0.95362 1.02738 0.93734 0.85928 0.80083 0.79001 0.79359 1.19354 1.20930 1.15999 1.21461 0.90983 0.93353 1.51858 0.94716 1.19631 0.93041 0.78802 0.98599 1.48009 1.63573 1.15715 1.04892 1.19694 0.87395 0.99016 0.86770 1.22957 0.89818 0.94287 1.02392 1.21924 0.96635 1.00338 1.03591 1.22147 0.95305 1.00721 1.06002 1.24881 0.91070 0.96801 0.98248 1.84087 1.16238 1.48276 1.60036 1.20895 0.75846 0.86169 0.86371 1.90601 1.48450 1.18871 1.88154 1.21447 1.04730 0.99265 0.90548 1.20287 1.04060 0.96751 0.87344 1.21868 0.89068 0.91253 0.96045 1.23117 1.02484 1.02608 0.95432 1.23907 0.93579 0.88345 0.96074 1.68484 1.03268 1.20556 1.33347 1.25323 0.99565 0.91427 0.84024 1.68276 1.23813 1.11074 1.22966 0.92298 0.93468 0.94040 0.86528 0.89865 0.82915 0.80890 0.74543 0.88525 0.88981 0.90108 0.87527 0.80214 0.77618 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 13.96 21.45 0.30 -55.32 16 2 C 0.02 1.30 5.47 84.66 0.46 1.76 16 3 Si 0.93 40.03 27.47 68.60 1.88 41.91 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 7 C -0.54 -28.36 9.83 25.60 0.25 -28.10 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 9 C 0.22 9.44 4.03 85.63 0.35 9.78 16 10 N -0.59 -23.90 2.44 -830.52 -2.03 -25.92 16 11 C 0.19 7.09 5.94 85.63 0.51 7.60 16 12 C -0.04 -1.46 6.90 24.83 0.17 -1.28 16 13 C -0.20 -6.02 10.81 22.19 0.24 -5.78 16 14 C -0.22 -5.30 10.91 22.19 0.24 -5.06 16 15 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 16 O -0.19 -6.21 10.65 -2.43 -0.03 -6.23 16 17 C 0.52 20.75 7.67 87.65 0.67 21.43 16 18 O -0.58 -24.87 15.56 -3.04 -0.05 -24.92 16 19 C -0.12 -4.24 4.12 29.85 0.12 -4.12 16 20 C -0.05 -1.36 4.94 29.85 0.15 -1.21 16 21 C 0.16 4.49 6.21 42.58 0.26 4.76 16 22 C -0.22 -4.23 9.80 22.44 0.22 -4.01 16 23 C 0.15 2.73 11.30 84.70 0.96 3.69 16 24 N -0.54 -13.35 10.44 -200.05 -2.09 -15.43 16 25 C 0.28 7.81 12.29 180.88 2.22 10.03 16 26 N -0.55 -17.44 10.03 -188.06 -1.89 -19.33 16 27 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.05 1.92 7.13 -2.38 -0.02 1.91 16 29 H 0.04 1.70 5.87 -2.39 -0.01 1.69 16 30 H 0.12 4.05 8.07 -2.39 -0.02 4.04 16 31 H 0.08 3.13 7.42 -2.39 -0.02 3.11 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.10 3.13 7.40 -2.39 -0.02 3.11 16 36 H 0.09 3.84 7.84 -2.38 -0.02 3.82 16 37 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 38 H 0.11 2.67 7.90 -2.39 -0.02 2.65 16 39 H 0.18 2.23 8.01 -2.91 -0.02 2.21 16 40 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.21 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -72.84 358.00 4.74 -68.10 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.99 Total: 27.85 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 7.64 Total: 9.28 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.70 Total: -116.00 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.07 Total: -31.15 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.88 Total: 41.91 kcal Total: -72.84 4.74 -68.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191220438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds