Wall clock time and date at job start Tue Mar 31 2020 10:50:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 120.00522 * 2 1
4 4 H 1.48501 * 109.47082 * 270.00217 * 3 2 1
5 5 H 1.48501 * 109.46849 * 29.99811 * 3 2 1
6 6 H 1.48504 * 109.47064 * 149.99683 * 3 2 1
7 7 C 1.37881 * 119.99894 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99489 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00366 * 179.97438 * 7 2 1
10 10 N 1.46496 * 109.47189 * 180.02562 * 9 7 2
11 11 C 1.46502 * 119.99881 * 269.99849 * 10 9 7
12 12 C 1.50697 * 109.47225 * 269.99884 * 11 10 9
13 13 C 1.34518 * 125.78713 * 89.72112 * 12 11 10
14 14 C 1.41385 * 106.84224 * 179.88734 * 13 12 11
15 15 C 1.34518 * 106.83641 * 0.37174 * 14 13 12
16 16 O 1.34297 * 108.42323 * 359.77138 * 15 14 13
17 17 C 1.34779 * 119.99926 * 90.00366 * 10 9 7
18 18 O 1.21284 * 119.99525 * 179.97438 * 17 10 9
19 19 C 1.50693 * 120.00203 * 359.97438 * 17 10 9
20 20 C 1.52999 * 109.47352 * 180.02562 * 19 17 10
21 21 C 1.50698 * 109.47164 * 179.97438 * 20 19 17
22 22 C 1.38624 * 120.44417 * 124.99635 * 21 20 19
23 23 C 1.38574 * 118.39673 * 179.70022 * 22 21 20
24 24 N 1.32345 * 119.10916 * 0.28037 * 23 22 21
25 25 C 1.31789 * 120.81651 * 359.97438 * 24 23 22
26 26 N 1.31809 * 121.75220 * 0.02562 * 25 24 23
27 27 H 0.97003 * 119.99727 * 359.97438 * 1 2 3
28 28 H 1.09004 * 109.46881 * 60.00154 * 9 7 2
29 29 H 1.08998 * 109.46945 * 300.00354 * 9 7 2
30 30 H 1.08998 * 109.46820 * 30.00415 * 11 10 9
31 31 H 1.08997 * 109.46703 * 150.00083 * 11 10 9
32 32 H 1.07999 * 126.57865 * 0.02562 * 13 12 11
33 33 H 1.07997 * 126.57837 * 180.15958 * 14 13 12
34 34 H 1.07998 * 125.78372 * 179.74832 * 15 14 13
35 35 H 1.09003 * 109.47073 * 59.99726 * 19 17 10
36 36 H 1.09005 * 109.47163 * 300.00108 * 19 17 10
37 37 H 1.08995 * 109.47163 * 59.99700 * 20 19 17
38 38 H 1.08995 * 109.46907 * 299.99945 * 20 19 17
39 39 H 1.08002 * 120.80485 * 359.97438 * 22 21 20
40 40 H 1.08001 * 120.45088 * 180.29937 * 23 22 21
41 41 H 1.08002 * 119.12276 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4400 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4644 -2.1294 0.0005
9 6 3.5114 -1.1942 0.0000
10 7 3.9997 -2.5754 0.0001
11 6 4.2443 -3.2658 1.2689
12 6 5.6678 -3.0290 1.7033
13 6 6.0969 -2.0113 2.4712
14 6 7.4917 -2.1788 2.6312
15 6 7.8327 -3.2842 1.9447
16 8 6.7240 -3.7949 1.3847
17 6 4.2239 -3.2110 -1.1671
18 8 4.6285 -4.3544 -1.1669
19 6 3.9718 -2.5011 -2.4722
20 6 4.3023 -3.4389 -3.6351
21 6 4.0496 -2.7292 -4.9402
22 6 5.0524 -2.6315 -5.8923
23 6 4.7718 -1.9751 -7.0800
24 7 3.5657 -1.4617 -7.2626
25 6 2.6383 -1.5695 -6.3325
26 7 2.8691 -2.1866 -5.1909
27 1 -0.4850 0.8401 0.0004
28 1 3.8751 -0.6798 0.8895
29 1 3.8744 -0.6810 -0.8905
30 1 3.5638 -2.8814 2.0286
31 1 4.0772 -4.3350 1.1388
32 1 5.4918 -1.2196 2.8876
33 1 8.1563 -1.5397 3.1936
34 1 8.8291 -3.6915 1.8581
35 1 4.6017 -1.6134 -2.5305
36 1 2.9237 -2.2073 -2.5295
37 1 3.6721 -4.3263 -3.5765
38 1 5.3502 -3.7331 -3.5780
39 1 6.0275 -3.0605 -5.7146
40 1 5.5271 -1.8839 -7.8466
41 1 1.6634 -1.1399 -6.5101
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000191220438.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:50:53
Heat of formation + Delta-G solvation = 9.459360 kcal
Electronic energy + Delta-G solvation = -25677.784860 eV
Core-core repulsion = 21945.046464 eV
Total energy + Delta-G solvation = -3732.738396 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.45124 -41.97680 -40.80061 -37.06618 -35.98665 -34.66724 -33.87900 -33.75208
-32.54330 -31.44598 -29.70044 -27.71107 -25.98072 -25.27425 -24.45425 -23.06210
-22.58674 -21.51896 -20.00683 -19.16846 -18.56478 -18.34594 -18.12717 -17.44405
-17.28608 -16.63149 -16.55510 -16.33005 -16.00778 -15.77704 -15.46574 -14.94183
-14.63636 -14.46003 -14.13228 -13.99182 -13.75310 -13.65212 -13.56273 -13.52335
-13.19028 -12.96794 -12.58084 -12.43770 -12.24792 -12.09285 -11.76920 -11.70945
-11.54455 -10.93138 -10.80876 -10.75749 -10.51101 -10.17853 -9.66880 -9.39259
-8.29459 -6.36503 -0.05093 0.12782 0.74230 1.37983 1.39240 1.48019
1.62064 1.68817 2.15692 2.32984 2.39214 2.82295 3.04596 3.08004
3.29413 3.46708 3.74767 3.85017 3.99857 4.08323 4.16533 4.17536
4.21875 4.26653 4.38341 4.53850 4.57721 4.64438 4.66512 4.82328
4.83460 4.95020 4.97452 5.04264 5.11219 5.20597 5.42856 5.46877
5.54697 5.64881 6.08080 6.15619 6.26593 6.52735 6.69585 7.14933
7.17916 7.30746 8.86709
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.009052 B = 0.004929 C = 0.003577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3092.618803 B = 5679.769456 C = 7826.178097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C 0.024 3.976
3 Si 0.933 3.067
4 H -0.268 1.268
5 H -0.284 1.284
6 H -0.237 1.237
7 C -0.538 4.538
8 H 0.035 0.965
9 C 0.221 3.779
10 N -0.592 5.592
11 C 0.194 3.806
12 C -0.044 4.044
13 C -0.205 4.205
14 C -0.223 4.223
15 C -0.043 4.043
16 O -0.190 6.190
17 C 0.517 3.483
18 O -0.579 6.579
19 C -0.120 4.120
20 C -0.046 4.046
21 C 0.163 3.837
22 C -0.215 4.215
23 C 0.146 3.854
24 N -0.542 5.542
25 C 0.284 3.716
26 N -0.546 5.546
27 H 0.268 0.732
28 H 0.047 0.953
29 H 0.042 0.958
30 H 0.117 0.883
31 H 0.083 0.917
32 H 0.153 0.847
33 H 0.174 0.826
34 H 0.238 0.762
35 H 0.097 0.903
36 H 0.092 0.908
37 H 0.081 0.919
38 H 0.106 0.894
39 H 0.180 0.820
40 H 0.207 0.793
41 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.879 -2.120 -5.423 17.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.175 4.175
3 Si 0.756 3.244
4 H -0.194 1.194
5 H -0.209 1.209
6 H -0.160 1.160
7 C -0.577 4.577
8 H 0.053 0.947
9 C 0.099 3.901
10 N -0.322 5.322
11 C 0.071 3.929
12 C -0.095 4.095
13 C -0.225 4.225
14 C -0.242 4.242
15 C -0.110 4.110
16 O -0.086 6.086
17 C 0.307 3.693
18 O -0.461 6.461
19 C -0.160 4.160
20 C -0.084 4.084
21 C 0.018 3.982
22 C -0.236 4.236
23 C -0.019 4.019
24 N -0.257 5.257
25 C -0.003 4.003
26 N -0.261 5.261
27 H 0.077 0.923
28 H 0.065 0.935
29 H 0.060 0.940
30 H 0.135 0.865
31 H 0.101 0.899
32 H 0.171 0.829
33 H 0.191 0.809
34 H 0.255 0.745
35 H 0.115 0.885
36 H 0.110 0.890
37 H 0.099 0.901
38 H 0.125 0.875
39 H 0.198 0.802
40 H 0.224 0.776
41 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 15.997 -2.456 -5.748 17.175
hybrid contribution 0.125 0.634 0.499 0.817
sum 16.123 -1.822 -5.249 17.053
Atomic orbital electron populations
1.70040 1.08271 1.28268 1.51212 1.25694 0.95362 1.02738 0.93734
0.85928 0.80083 0.79001 0.79359 1.19354 1.20930 1.15999 1.21461
0.90983 0.93353 1.51858 0.94716 1.19631 0.93041 0.78802 0.98599
1.48009 1.63573 1.15715 1.04892 1.19694 0.87395 0.99016 0.86770
1.22957 0.89818 0.94287 1.02392 1.21924 0.96635 1.00338 1.03591
1.22147 0.95305 1.00721 1.06002 1.24881 0.91070 0.96801 0.98248
1.84087 1.16238 1.48276 1.60036 1.20895 0.75846 0.86169 0.86371
1.90601 1.48450 1.18871 1.88154 1.21447 1.04730 0.99265 0.90548
1.20287 1.04060 0.96751 0.87344 1.21868 0.89068 0.91253 0.96045
1.23117 1.02484 1.02608 0.95432 1.23907 0.93579 0.88345 0.96074
1.68484 1.03268 1.20556 1.33347 1.25323 0.99565 0.91427 0.84024
1.68276 1.23813 1.11074 1.22966 0.92298 0.93468 0.94040 0.86528
0.89865 0.82915 0.80890 0.74543 0.88525 0.88981 0.90108 0.87527
0.80214 0.77618 0.77550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.62 13.96 21.45 0.30 -55.32 16
2 C 0.02 1.30 5.47 84.66 0.46 1.76 16
3 Si 0.93 40.03 27.47 68.60 1.88 41.91 16
4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16
5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
6 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16
7 C -0.54 -28.36 9.83 25.60 0.25 -28.10 16
8 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16
9 C 0.22 9.44 4.03 85.63 0.35 9.78 16
10 N -0.59 -23.90 2.44 -830.52 -2.03 -25.92 16
11 C 0.19 7.09 5.94 85.63 0.51 7.60 16
12 C -0.04 -1.46 6.90 24.83 0.17 -1.28 16
13 C -0.20 -6.02 10.81 22.19 0.24 -5.78 16
14 C -0.22 -5.30 10.91 22.19 0.24 -5.06 16
15 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16
16 O -0.19 -6.21 10.65 -2.43 -0.03 -6.23 16
17 C 0.52 20.75 7.67 87.65 0.67 21.43 16
18 O -0.58 -24.87 15.56 -3.04 -0.05 -24.92 16
19 C -0.12 -4.24 4.12 29.85 0.12 -4.12 16
20 C -0.05 -1.36 4.94 29.85 0.15 -1.21 16
21 C 0.16 4.49 6.21 42.58 0.26 4.76 16
22 C -0.22 -4.23 9.80 22.44 0.22 -4.01 16
23 C 0.15 2.73 11.30 84.70 0.96 3.69 16
24 N -0.54 -13.35 10.44 -200.05 -2.09 -15.43 16
25 C 0.28 7.81 12.29 180.88 2.22 10.03 16
26 N -0.55 -17.44 10.03 -188.06 -1.89 -19.33 16
27 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
28 H 0.05 1.92 7.13 -2.38 -0.02 1.91 16
29 H 0.04 1.70 5.87 -2.39 -0.01 1.69 16
30 H 0.12 4.05 8.07 -2.39 -0.02 4.04 16
31 H 0.08 3.13 7.42 -2.39 -0.02 3.11 16
32 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16
33 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16
34 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16
35 H 0.10 3.13 7.40 -2.39 -0.02 3.11 16
36 H 0.09 3.84 7.84 -2.38 -0.02 3.82 16
37 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16
38 H 0.11 2.67 7.90 -2.39 -0.02 2.65 16
39 H 0.18 2.23 8.01 -2.91 -0.02 2.21 16
40 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16
41 H 0.21 4.73 8.06 -2.91 -0.02 4.71 16
Total: -1.00 -72.84 358.00 4.74 -68.10
By element:
Atomic # 1 Polarization: 26.87 SS G_CDS: 0.99 Total: 27.85 kcal
Atomic # 6 Polarization: 1.64 SS G_CDS: 7.64 Total: 9.28 kcal
Atomic # 7 Polarization: -110.30 SS G_CDS: -5.70 Total: -116.00 kcal
Atomic # 8 Polarization: -31.08 SS G_CDS: -0.07 Total: -31.15 kcal
Atomic # 14 Polarization: 40.03 SS G_CDS: 1.88 Total: 41.91 kcal
Total: -72.84 4.74 -68.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000191220438.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal
(2) G-P(sol) polarization free energy of solvation -72.840 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds