Wall clock time and date at job start Tue Mar 31 2020 11:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29813 * 126.33894 * 2 1 4 4 O 1.41325 * 109.72876 * 179.97438 * 3 2 1 5 5 C 1.34838 * 109.42124 * 0.02562 * 4 3 2 6 6 N 1.32451 * 133.09208 * 179.97438 * 5 4 3 7 7 C 1.31566 * 122.01962 * 180.02562 * 6 5 4 8 8 C 1.50704 * 119.16627 * 180.02562 * 7 6 5 9 9 C 1.52993 * 117.49647 * 163.74619 * 8 7 6 10 10 C 1.53002 * 117.49996 * 95.08694 * 8 7 6 11 11 C 1.38588 * 121.65782 * 359.67556 * 7 6 5 12 12 C 1.39441 * 119.20445 * 0.61681 * 11 7 6 13 13 C 1.48003 * 121.10694 * 179.69369 * 12 11 7 14 14 O 1.21526 * 120.00042 * 172.65648 * 13 12 11 15 15 N 1.34781 * 119.99733 * 352.65324 * 13 12 11 16 16 C 1.46506 * 119.99657 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47003 * 324.99985 * 16 15 13 18 18 C 1.52995 * 109.46900 * 84.99836 * 16 15 13 19 19 C 1.50699 * 109.46938 * 205.00011 * 16 15 13 20 20 H 1.08003 * 119.99988 * 359.97438 * 19 16 15 21 21 C 1.37868 * 119.99979 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99995 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 120.00118 * 179.97438 * 21 19 16 24 24 H 1.48502 * 109.47066 * 60.00354 * 23 21 19 25 25 H 1.48502 * 109.47207 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47160 * 300.00076 * 23 21 19 27 27 C 1.40518 * 106.86058 * 359.97438 * 5 4 3 28 28 H 1.09002 * 109.47319 * 260.29118 * 1 2 3 29 29 H 1.09002 * 109.47116 * 20.29120 * 1 2 3 30 30 H 1.09004 * 109.47141 * 140.28721 * 1 2 3 31 31 H 1.08997 * 115.54944 * 309.41377 * 8 7 6 32 32 H 1.08997 * 117.50534 * 359.97438 * 9 8 7 33 33 H 1.09010 * 117.49810 * 145.01537 * 9 8 7 34 34 H 1.08995 * 117.49572 * 214.97689 * 10 8 7 35 35 H 1.08997 * 117.49747 * 359.97209 * 10 8 7 36 36 H 1.08001 * 120.39983 * 180.31588 * 11 7 6 37 37 H 0.96992 * 120.00187 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.47171 * 60.00252 * 18 16 15 39 39 H 1.09003 * 109.46761 * 179.97438 * 18 16 15 40 40 H 1.09003 * 109.47711 * 299.99706 * 18 16 15 41 41 H 0.97009 * 120.00168 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6304 0.6417 0.0006 5 6 3.6966 -0.7051 0.0004 6 7 4.7070 -1.5614 0.0003 7 6 4.5180 -2.8634 -0.0004 8 6 5.7147 -3.7793 0.0002 9 6 5.4835 -5.2434 0.3792 10 6 6.2016 -4.3048 1.3521 11 6 3.2460 -3.4138 0.0056 12 6 2.1383 -2.5669 -0.0005 13 6 0.7612 -3.1092 -0.0013 14 8 -0.1870 -2.3601 0.1279 15 7 0.5588 -4.4339 -0.1453 16 6 -0.8044 -4.9707 -0.1466 17 1 -1.4226 -4.3941 0.5415 18 6 -1.3881 -4.8767 -1.5576 19 6 -0.7769 -6.4126 0.2908 20 1 0.1621 -6.8823 0.5439 21 6 -1.9504 -7.1321 0.3677 22 7 -3.0938 -6.5603 0.0590 23 14 -1.9163 -8.9196 0.9091 24 1 -1.3489 -9.0114 2.2783 25 1 -3.2980 -9.4637 0.9079 26 1 -1.0748 -9.7050 -0.0292 27 6 2.3734 -1.1781 0.0003 28 1 -0.3634 -0.1733 1.0130 29 1 -0.3633 0.9639 -0.3564 30 1 -0.3634 -0.7906 -0.6566 31 1 6.4681 -3.5689 -0.7589 32 1 4.4660 -5.5442 0.6286 33 1 6.0851 -5.9963 -0.1303 34 1 7.2752 -4.4405 1.4823 35 1 5.6566 -3.9877 2.2412 36 1 3.1144 -4.4857 0.0101 37 1 1.3155 -5.0318 -0.2487 38 1 -0.7700 -5.4534 -2.2457 39 1 -2.4022 -5.2765 -1.5587 40 1 -1.4081 -3.8338 -1.8740 41 1 -3.9195 -7.0667 0.1127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194652787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:19 Heat of formation + Delta-G solvation = 77.876369 kcal Electronic energy + Delta-G solvation = -26059.751142 eV Core-core repulsion = 22329.979530 eV Total energy + Delta-G solvation = -3729.771612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14236 -39.77348 -38.96193 -36.75194 -35.30190 -34.51590 -33.09095 -32.05877 -30.32707 -29.01288 -28.55320 -25.48006 -25.25692 -24.53209 -22.68674 -22.31336 -20.92683 -20.51027 -19.57987 -18.02220 -17.92372 -17.47829 -16.51945 -16.35943 -15.76607 -15.27949 -15.03351 -14.89947 -14.48984 -14.23812 -13.74356 -13.51481 -13.31303 -13.08966 -12.85885 -12.56788 -12.50584 -12.18213 -11.85627 -11.68777 -11.40389 -11.22038 -11.10126 -11.05903 -10.87495 -10.82182 -10.77680 -10.47182 -10.36068 -10.03831 -9.48623 -9.25274 -9.17594 -9.01757 -8.69054 -8.19498 -6.25515 -4.35947 0.09276 0.72391 1.85410 1.99824 2.89108 3.17437 3.23234 3.23904 3.40070 3.46440 3.65199 3.82410 4.03959 4.08305 4.23276 4.38583 4.54726 4.58626 4.73113 4.83600 5.03403 5.07622 5.11522 5.37023 5.37750 5.49023 5.61472 5.67440 5.74884 5.81556 5.83677 5.87431 6.06870 6.42526 6.65047 6.79626 6.95171 7.02842 7.19423 7.33257 7.46813 7.52126 7.72355 7.97873 8.34015 8.55900 8.78380 9.31738 10.80284 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.004361 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.130564 B = 6419.029785 C = 8392.886711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.169 3.831 3 N -0.290 5.290 4 O -0.089 6.089 5 C 0.293 3.707 6 N -0.470 5.470 7 C 0.231 3.769 8 C -0.115 4.115 9 C -0.168 4.168 10 C -0.157 4.157 11 C -0.178 4.178 12 C 0.014 3.986 13 C 0.535 3.465 14 O -0.528 6.528 15 N -0.688 5.688 16 C 0.264 3.736 17 H 0.054 0.946 18 C -0.148 4.148 19 C -0.539 4.539 20 H 0.062 0.938 21 C 0.069 3.931 22 N -0.881 5.881 23 Si 0.903 3.097 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.210 4.210 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.156 0.844 37 H 0.390 0.610 38 H 0.028 0.972 39 H 0.093 0.907 40 H 0.016 0.984 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 3.727 -0.491 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 N -0.039 5.039 4 O -0.091 6.091 5 C 0.110 3.890 6 N -0.191 5.191 7 C 0.088 3.912 8 C -0.134 4.134 9 C -0.205 4.205 10 C -0.195 4.195 11 C -0.199 4.199 12 C 0.001 3.999 13 C 0.320 3.680 14 O -0.408 6.408 15 N -0.335 5.335 16 C 0.163 3.837 17 H 0.072 0.928 18 C -0.207 4.207 19 C -0.577 4.577 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.518 5.518 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.217 4.217 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.035 0.965 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.541 5.959 -0.417 14.800 hybrid contribution -0.358 -2.237 0.199 2.274 sum 13.183 3.722 -0.218 13.700 Atomic orbital electron populations 1.21028 0.82756 1.04147 1.06468 1.24732 0.99020 0.88344 0.88968 1.80101 0.83789 1.17211 1.22818 1.89228 1.23892 1.14655 1.81306 1.20275 0.89078 0.86602 0.93088 1.66137 1.33060 1.02203 1.17654 1.20286 0.93148 0.87565 0.90216 1.20825 0.97213 0.93648 1.01667 1.23222 1.03036 0.91405 1.02847 1.23029 1.01395 1.02305 0.92765 1.22156 0.91501 1.01779 1.04479 1.20373 0.95599 0.91016 0.92923 1.18072 0.87008 0.83835 0.79115 1.90685 1.42944 1.56645 1.50525 1.46613 1.12475 1.05448 1.68951 1.18896 0.76166 0.93892 0.94727 0.92781 1.22098 1.04057 0.97279 0.97238 1.21112 0.93943 0.95299 1.47368 0.92021 1.24862 0.95163 0.98742 0.94702 1.69875 0.98126 1.36921 1.46906 0.86489 0.77325 0.83973 0.79232 1.20106 1.21058 1.20076 1.21314 0.93200 0.94632 1.12534 0.88360 0.91322 0.85310 0.85204 0.87642 0.87393 0.87736 0.88374 0.82627 0.77661 0.95291 0.88844 0.96501 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 8.53 36.00 0.31 -0.93 16 2 C 0.17 2.70 7.44 -80.24 -0.60 2.10 16 3 N -0.29 -4.80 12.81 34.84 0.45 -4.35 16 4 O -0.09 -1.52 12.06 7.65 0.09 -1.43 16 5 C 0.29 4.81 8.64 -16.43 -0.14 4.67 16 6 N -0.47 -7.06 10.25 -9.24 -0.09 -7.16 16 7 C 0.23 2.89 6.46 -82.58 -0.53 2.36 16 8 C -0.11 -1.05 6.20 -91.77 -0.57 -1.62 16 9 C -0.17 -1.23 9.79 -26.70 -0.26 -1.49 16 10 C -0.16 -1.23 10.24 -26.69 -0.27 -1.51 16 11 C -0.18 -2.27 8.83 -39.00 -0.34 -2.61 16 12 C 0.01 0.22 5.93 -104.46 -0.62 -0.40 16 13 C 0.54 9.59 7.74 -12.26 -0.09 9.50 16 14 O -0.53 -10.44 11.05 5.34 0.06 -10.38 16 15 N -0.69 -12.65 5.03 -55.83 -0.28 -12.93 16 16 C 0.26 6.04 2.56 -69.08 -0.18 5.87 16 17 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 18 C -0.15 -3.34 9.26 37.15 0.34 -3.00 16 19 C -0.54 -13.07 8.73 -34.44 -0.30 -13.37 16 20 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -23.23 11.32 55.43 0.63 -22.60 16 23 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 C -0.21 -3.43 6.15 -104.83 -0.65 -4.07 16 28 H 0.10 1.40 7.89 -51.93 -0.41 0.99 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.13 2.05 5.45 -52.41 -0.29 1.77 16 31 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 0.79 6.34 -51.93 -0.33 0.46 16 33 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.16 1.60 4.74 -52.49 -0.25 1.35 16 37 H 0.39 6.07 6.74 -40.82 -0.28 5.79 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -28.30 343.03 -7.76 -36.06 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.76 Total: 6.15 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -4.00 Total: -2.87 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.70 Total: -47.04 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.15 Total: -11.81 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.30 -7.76 -36.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.938 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds