Wall clock time and date at job start Tue Mar 31 2020 11:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29812 * 126.33358 * 2 1 4 4 O 1.41332 * 109.72505 * 179.97438 * 3 2 1 5 5 C 1.34835 * 109.42019 * 359.97438 * 4 3 2 6 6 N 1.32450 * 133.09473 * 179.97438 * 5 4 3 7 7 C 1.31566 * 122.02625 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.16899 * 179.97438 * 7 6 5 9 9 C 1.53001 * 117.49338 * 163.74942 * 8 7 6 10 10 C 1.53001 * 117.49548 * 95.09347 * 8 7 6 11 11 C 1.38588 * 121.65545 * 359.70245 * 7 6 5 12 12 C 1.39444 * 119.20103 * 0.56971 * 11 7 6 13 13 C 1.48010 * 121.10160 * 179.73906 * 12 11 7 14 14 O 1.21532 * 119.99431 * 144.48090 * 13 12 11 15 15 N 1.34771 * 120.00333 * 324.47800 * 13 12 11 16 16 C 1.46495 * 119.99982 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47110 * 35.00627 * 16 15 13 18 18 C 1.52997 * 109.47348 * 275.00065 * 16 15 13 19 19 C 1.50710 * 109.47136 * 155.00231 * 16 15 13 20 20 H 1.07998 * 119.99548 * 0.02562 * 19 16 15 21 21 C 1.37870 * 120.00084 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00271 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 120.00094 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46990 * 89.99894 * 23 21 19 25 25 H 1.48494 * 109.47171 * 209.99607 * 23 21 19 26 26 H 1.48498 * 109.46955 * 330.00100 * 23 21 19 27 27 C 1.40516 * 106.86299 * 0.02562 * 5 4 3 28 28 H 1.08992 * 109.46940 * 264.26131 * 1 2 3 29 29 H 1.08999 * 109.47106 * 24.26144 * 1 2 3 30 30 H 1.08996 * 109.46872 * 144.25704 * 1 2 3 31 31 H 1.08995 * 115.55401 * 309.41732 * 8 7 6 32 32 H 1.09001 * 117.50287 * 359.97438 * 9 8 7 33 33 H 1.08994 * 117.49865 * 145.02573 * 9 8 7 34 34 H 1.09003 * 117.49565 * 214.97988 * 10 8 7 35 35 H 1.09004 * 117.49872 * 359.96703 * 10 8 7 36 36 H 1.08000 * 120.40461 * 180.30666 * 11 7 6 37 37 H 0.97004 * 120.00264 * 359.97438 * 15 13 12 38 38 H 1.09001 * 109.46961 * 179.97438 * 18 16 15 39 39 H 1.09001 * 109.46970 * 60.00479 * 18 16 15 40 40 H 1.08999 * 109.47473 * 300.00339 * 18 16 15 41 41 H 0.96999 * 120.00258 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0457 0.0000 4 8 3.6305 0.6418 0.0006 5 6 3.6966 -0.7050 0.0015 6 7 4.7070 -1.5613 0.0019 7 6 4.5181 -2.8634 0.0024 8 6 5.7149 -3.7792 0.0023 9 6 5.4841 -5.2431 0.3826 10 6 6.2031 -4.3038 1.3541 11 6 3.2462 -3.4137 0.0087 12 6 2.1384 -2.5668 0.0025 13 6 0.7613 -3.1093 0.0030 14 8 -0.1190 -2.5317 0.6101 15 7 0.4835 -4.2435 -0.6698 16 6 -0.8794 -4.7807 -0.6687 17 1 -1.5942 -3.9578 -0.6645 18 6 -1.0869 -5.6429 0.5780 19 6 -1.0888 -5.6217 -1.9017 20 1 -0.2867 -5.7441 -2.6144 21 6 -2.3044 -6.2347 -2.1197 22 7 -3.2810 -6.0860 -1.2515 23 14 -2.5642 -7.2765 -3.6483 24 1 -2.1874 -8.6833 -3.3584 25 1 -3.9928 -7.2194 -4.0493 26 1 -1.7189 -6.7551 -4.7522 27 6 2.3735 -1.1781 0.0010 28 1 -0.3633 -0.1028 1.0224 29 1 -0.3633 0.9369 -0.4223 30 1 -0.3633 -0.8341 -0.6003 31 1 6.4674 -3.5694 -0.7577 32 1 4.4668 -5.5437 0.6333 33 1 6.0851 -5.9962 -0.1268 34 1 7.2770 -4.4393 1.4833 35 1 5.6590 -3.9860 2.2435 36 1 3.1145 -4.4856 0.0139 37 1 1.1861 -4.7043 -1.1547 38 1 -2.1011 -6.0422 0.5789 39 1 -0.9355 -5.0347 1.4697 40 1 -0.3720 -6.4658 0.5738 41 1 -4.1360 -6.5177 -1.4047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194652805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:22 Heat of formation + Delta-G solvation = 67.862790 kcal Electronic energy + Delta-G solvation = -26016.096549 eV Core-core repulsion = 22285.890715 eV Total energy + Delta-G solvation = -3730.205834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.15311 -39.76762 -38.94909 -36.76235 -35.22738 -34.60536 -32.99197 -32.09335 -30.34878 -29.02414 -28.63396 -25.48641 -25.26630 -24.53029 -22.68620 -22.31398 -20.93939 -20.48662 -19.59214 -18.04800 -17.86804 -17.48924 -16.54408 -16.31216 -15.76883 -15.39707 -15.08188 -14.87195 -14.33225 -14.10209 -13.66928 -13.54384 -13.24170 -13.16487 -13.00265 -12.64796 -12.50823 -12.29572 -11.88510 -11.77185 -11.42953 -11.20741 -11.13179 -11.00937 -10.89013 -10.87724 -10.79122 -10.46757 -10.36564 -10.07998 -9.55505 -9.32159 -9.20482 -9.03071 -8.70413 -8.18308 -6.25181 -4.35414 0.11302 0.74583 1.83301 1.97474 2.89767 3.16762 3.24023 3.25540 3.31887 3.46834 3.54058 3.81325 4.00180 4.11185 4.23939 4.36961 4.53908 4.58618 4.72716 4.87370 5.02115 5.07741 5.09153 5.33823 5.37605 5.46793 5.57760 5.62979 5.70186 5.72514 5.80495 5.81991 6.04729 6.28701 6.64893 6.77250 6.95553 6.98988 7.16113 7.33016 7.46422 7.53323 7.72448 7.97974 8.34840 8.54682 8.77966 9.32425 10.80642 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.004201 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.461879 B = 6662.785022 C = 8177.477572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.166 3.834 3 N -0.286 5.286 4 O -0.087 6.087 5 C 0.295 3.705 6 N -0.472 5.472 7 C 0.232 3.768 8 C -0.114 4.114 9 C -0.168 4.168 10 C -0.158 4.158 11 C -0.179 4.179 12 C 0.018 3.982 13 C 0.537 3.463 14 O -0.528 6.528 15 N -0.689 5.689 16 C 0.264 3.736 17 H 0.053 0.947 18 C -0.148 4.148 19 C -0.538 4.538 20 H 0.062 0.938 21 C 0.069 3.931 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.214 4.214 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.157 0.843 37 H 0.392 0.608 38 H 0.093 0.907 39 H 0.016 0.984 40 H 0.028 0.972 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.090 2.694 2.769 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 N -0.035 5.035 4 O -0.089 6.089 5 C 0.111 3.889 6 N -0.192 5.192 7 C 0.089 3.911 8 C -0.133 4.133 9 C -0.205 4.205 10 C -0.195 4.195 11 C -0.200 4.200 12 C 0.004 3.996 13 C 0.320 3.680 14 O -0.407 6.407 15 N -0.336 5.336 16 C 0.163 3.837 17 H 0.071 0.929 18 C -0.207 4.207 19 C -0.576 4.576 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.519 5.519 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.221 4.221 28 H 0.122 0.878 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.175 0.825 37 H 0.225 0.775 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.175 4.810 3.217 15.310 hybrid contribution -0.580 -1.807 -1.039 2.163 sum 13.595 3.003 2.178 14.092 Atomic orbital electron populations 1.20685 0.83052 1.04352 1.05907 1.24647 0.98809 0.88597 0.89378 1.80090 0.83875 1.17131 1.22362 1.89229 1.23702 1.14729 1.81280 1.20246 0.89053 0.86533 0.93018 1.66133 1.33022 1.02206 1.17819 1.20286 0.93146 0.87557 0.90102 1.20824 0.97211 0.93626 1.01616 1.23213 1.02960 0.91452 1.02859 1.23030 1.01378 1.02344 0.92784 1.22134 0.91295 1.01833 1.04767 1.20350 0.95786 0.91054 0.92372 1.17997 0.86183 0.82233 0.81571 1.90764 1.46589 1.59465 1.43866 1.46594 1.14879 1.23344 1.48818 1.18892 0.76457 0.93725 0.94622 0.92892 1.22093 1.03931 0.98553 0.96075 1.21163 0.99005 1.31425 1.06034 0.91956 1.24862 0.95574 0.96163 0.96876 1.69883 1.03729 1.43155 1.35093 0.86434 0.77613 0.80395 0.82618 1.20453 1.20993 1.19807 1.21256 0.93224 0.94533 1.13060 0.87772 0.90320 0.87774 0.85167 0.87712 0.87395 0.87726 0.88422 0.82510 0.77479 0.88865 0.96494 0.95268 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 8.65 36.01 0.31 -0.85 16 2 C 0.17 2.64 7.44 -80.23 -0.60 2.04 16 3 N -0.29 -4.70 12.81 34.85 0.45 -4.25 16 4 O -0.09 -1.48 12.06 7.65 0.09 -1.39 16 5 C 0.29 4.83 8.64 -16.43 -0.14 4.69 16 6 N -0.47 -7.07 10.25 -9.24 -0.09 -7.16 16 7 C 0.23 2.90 6.46 -82.58 -0.53 2.36 16 8 C -0.11 -1.03 6.20 -91.77 -0.57 -1.60 16 9 C -0.17 -1.20 9.79 -26.69 -0.26 -1.46 16 10 C -0.16 -1.21 10.24 -26.69 -0.27 -1.48 16 11 C -0.18 -2.28 8.67 -39.00 -0.34 -2.62 16 12 C 0.02 0.27 5.84 -104.45 -0.61 -0.34 16 13 C 0.54 9.70 7.08 -12.26 -0.09 9.61 16 14 O -0.53 -10.78 12.83 5.34 0.07 -10.71 16 15 N -0.69 -12.78 5.01 -55.83 -0.28 -13.06 16 16 C 0.26 6.07 2.56 -69.08 -0.18 5.89 16 17 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 18 C -0.15 -3.35 9.26 37.16 0.34 -3.00 16 19 C -0.54 -13.16 8.73 -34.44 -0.30 -13.46 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.88 -23.31 11.32 55.43 0.63 -22.68 16 23 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.21 -3.50 6.12 -104.84 -0.64 -4.14 16 28 H 0.10 1.46 7.88 -51.93 -0.41 1.05 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.65 6.24 -51.93 -0.32 1.32 16 31 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.77 6.34 -51.93 -0.33 0.44 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.16 1.62 5.85 -52.49 -0.31 1.32 16 37 H 0.39 6.25 7.82 -40.82 -0.32 5.93 16 38 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -28.73 346.94 -7.80 -36.53 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.90 Total: 5.71 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.97 Total: -2.71 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.70 Total: -47.16 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.16 Total: -12.10 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.73 -7.80 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.393 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds