Wall clock time and date at job start Tue Mar 31 2020 11:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35920 * 116.99947 * 2 1 4 4 C 1.38597 * 120.09000 * 0.02562 * 3 2 1 5 5 C 1.38202 * 120.01565 * 180.02562 * 4 3 2 6 6 C 1.38313 * 120.18743 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91587 * 180.02562 * 6 5 4 8 8 C 1.38153 * 120.17305 * 359.97438 * 6 5 4 9 9 C 1.38765 * 119.98582 * 0.25796 * 8 6 5 10 10 N 1.40161 * 120.09211 * 179.73933 * 9 8 6 11 11 C 1.35855 * 124.95510 * 359.72307 * 10 9 8 12 12 C 1.35343 * 107.14644 * 179.83256 * 11 10 9 13 13 C 1.41562 * 105.56036 * 0.40535 * 12 11 10 14 14 C 1.47541 * 126.45586 * 179.75810 * 13 12 11 15 15 O 1.21614 * 119.99629 * 4.78645 * 14 13 12 16 16 N 1.34778 * 119.99757 * 184.78364 * 14 13 12 17 17 C 1.46494 * 120.00312 * 5.41375 * 16 14 13 18 18 C 1.36905 * 119.99478 * 185.41449 * 16 14 13 19 19 H 1.08003 * 119.99840 * 344.99161 * 18 16 14 20 20 C 1.39024 * 119.99868 * 164.99792 * 18 16 14 21 21 N 1.31377 * 119.99725 * 326.16259 * 20 18 16 22 22 Si 1.86802 * 119.99885 * 146.16184 * 20 18 16 23 23 H 1.48502 * 109.46989 * 94.99366 * 22 20 18 24 24 H 1.48499 * 109.46968 * 214.99054 * 22 20 18 25 25 H 1.48496 * 109.47300 * 334.99699 * 22 20 18 26 26 N 1.28479 * 124.95344 * 180.02562 * 10 9 8 27 27 H 1.08998 * 109.47579 * 59.99873 * 1 2 3 28 28 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46923 * 299.99069 * 1 2 3 30 30 H 1.08004 * 119.99292 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.90677 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47288 * 269.97707 * 7 6 5 33 33 H 1.09004 * 109.46800 * 29.97329 * 7 6 5 34 34 H 1.09000 * 109.47336 * 149.97464 * 7 6 5 35 35 H 1.07999 * 120.00766 * 179.97438 * 8 6 5 36 36 H 1.08003 * 126.42246 * 359.97438 * 11 10 9 37 37 H 1.08008 * 127.22186 * 180.14793 * 12 11 10 38 38 H 1.08997 * 109.47191 * 35.86660 * 17 16 14 39 39 H 1.08998 * 109.47341 * 155.86795 * 17 16 14 40 40 H 1.08997 * 109.47120 * 275.87092 * 17 16 14 41 41 H 0.97002 * 119.99361 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9220 3.6052 0.0000 6 6 3.3031 3.6803 -0.0005 7 6 3.9826 5.0254 -0.0005 8 6 4.0613 2.5254 0.0000 9 6 3.4372 1.2861 -0.0043 10 7 4.2043 0.1130 -0.0093 11 6 5.5622 0.0710 -0.0158 12 6 5.9210 -1.2340 -0.0152 13 6 4.7067 -1.9617 -0.0178 14 6 4.5647 -3.4303 -0.0233 15 8 5.5510 -4.1368 0.0618 16 7 3.3421 -3.9887 -0.1225 17 6 2.1664 -3.1433 -0.3441 18 6 3.1990 -5.3461 -0.0164 19 1 4.0637 -5.9882 -0.0966 20 6 1.9405 -5.8979 0.1947 21 7 1.0537 -5.2535 0.9187 22 14 1.5106 -7.5557 -0.5514 23 1 1.7577 -8.6269 0.4470 24 1 0.0784 -7.5655 -0.9436 25 1 2.3539 -7.7926 -1.7505 26 7 3.7258 -1.0793 -0.0141 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2144 2.3196 0.0005 31 1 1.3335 4.5107 0.0008 32 1 4.1464 5.3497 -1.0282 33 1 3.3520 5.7510 0.5133 34 1 4.9408 4.9484 0.5133 35 1 5.1395 2.5872 -0.0008 36 1 6.2300 0.9197 -0.0183 37 1 6.9235 -1.6360 -0.0171 38 1 2.4344 -2.3119 -0.9960 39 1 1.3781 -3.7326 -0.8122 40 1 1.8121 -2.7561 0.6113 41 1 0.1756 -5.6384 1.0656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263823252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:00 Heat of formation + Delta-G solvation = 67.214452 kcal Electronic energy + Delta-G solvation = -26399.237496 eV Core-core repulsion = 22669.003548 eV Total energy + Delta-G solvation = -3730.233948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31186 -40.06847 -37.99301 -37.68604 -34.55973 -33.65754 -31.96469 -31.66277 -30.32187 -29.29815 -27.85046 -26.16299 -26.01561 -24.96901 -23.54173 -22.48382 -20.76460 -20.47451 -18.88611 -18.34977 -17.09324 -16.79275 -16.17427 -16.02213 -15.80070 -15.19046 -14.74757 -14.64796 -14.43169 -14.05199 -13.92207 -13.88299 -13.54076 -13.20245 -12.80864 -12.38964 -12.36266 -12.31134 -12.14031 -11.71130 -11.69171 -11.41371 -11.24861 -11.12574 -10.92460 -10.81979 -10.42830 -10.18595 -9.86151 -9.71231 -8.88062 -8.69163 -8.61966 -8.43906 -7.70511 -7.61461 -6.43986 -3.67924 0.79289 1.15151 2.49422 2.75607 2.78567 3.21555 3.28221 3.29120 3.38493 3.57959 4.17023 4.39593 4.47826 4.58411 4.75997 4.82396 4.95583 5.01955 5.16302 5.18914 5.23143 5.24277 5.29924 5.35378 5.38649 5.58010 5.66827 5.68924 5.90356 5.97066 6.06635 6.24976 6.27631 6.32896 6.46932 6.78274 6.96817 7.04253 7.20051 7.37223 7.51015 7.59111 8.19417 8.46905 8.62362 9.24428 9.49784 10.12578 10.61582 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.004016 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.443998 B = 6970.579067 C = 8300.634919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.132 3.868 4 C -0.190 4.190 5 C -0.088 4.088 6 C -0.107 4.107 7 C -0.107 4.107 8 C -0.099 4.099 9 C 0.121 3.879 10 N -0.248 5.248 11 C -0.039 4.039 12 C -0.177 4.177 13 C 0.024 3.976 14 C 0.505 3.495 15 O -0.591 6.591 16 N -0.416 5.416 17 C 0.114 3.886 18 C -0.319 4.319 19 H 0.107 0.893 20 C 0.042 3.958 21 N -0.841 5.841 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.266 1.266 26 N -0.241 5.241 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.132 21.502 -2.450 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.181 6.181 3 C 0.084 3.916 4 C -0.209 4.209 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.164 4.164 8 C -0.120 4.120 9 C 0.029 3.971 10 N -0.029 5.029 11 C -0.177 4.177 12 C -0.204 4.204 13 C -0.138 4.138 14 C 0.293 3.707 15 O -0.477 6.477 16 N -0.132 5.132 17 C -0.030 4.030 18 C -0.447 4.447 19 H 0.124 0.876 20 C -0.165 4.165 21 N -0.477 5.477 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.191 1.191 26 N -0.073 5.073 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.191 0.809 37 H 0.177 0.823 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.997 21.057 -2.331 21.397 hybrid contribution 0.135 -0.588 -0.168 0.626 sum -2.862 20.470 -2.499 20.819 Atomic orbital electron populations 1.23169 0.78705 1.04865 1.00499 1.86552 1.20684 1.23953 1.86935 1.18711 0.90085 0.86155 0.96699 1.21157 1.00337 0.91481 1.07968 1.20852 0.93813 0.97131 0.98882 1.19535 0.93412 0.94804 1.03076 1.20704 1.00390 0.92924 1.02346 1.20520 1.00303 0.89014 1.02154 1.16985 0.87545 0.84060 1.08543 1.42760 1.04193 1.03918 1.52056 1.22802 0.84645 0.99409 1.10876 1.21777 0.99768 0.91108 1.07797 1.22777 0.89971 0.95449 1.05595 1.16577 0.84468 0.83311 0.86385 1.90592 1.37650 1.61232 1.58187 1.43567 1.05132 1.06996 1.57467 1.21603 0.88048 0.92588 1.00757 1.19649 0.95131 0.81021 1.48875 0.87553 1.25228 0.96273 0.99643 0.95349 1.70255 1.06969 1.40654 1.29817 0.86249 0.77695 0.82334 0.80471 1.20291 1.20713 1.19062 1.74344 1.25205 0.88248 1.19492 0.92992 0.87402 0.92902 0.84515 0.85398 0.91203 0.91456 0.91493 0.84532 0.80897 0.82261 0.92715 0.92331 0.92849 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 101.05 0.99 1.26 16 2 O -0.27 -4.43 8.50 -19.49 -0.17 -4.59 16 3 C 0.13 1.93 6.69 -39.05 -0.26 1.67 16 4 C -0.19 -2.07 9.03 -39.46 -0.36 -2.43 16 5 C -0.09 -0.81 9.69 -39.57 -0.38 -1.19 16 6 C -0.11 -1.01 5.88 -104.63 -0.62 -1.62 16 7 C -0.11 -0.67 10.01 36.00 0.36 -0.31 16 8 C -0.10 -1.12 9.08 -39.42 -0.36 -1.48 16 9 C 0.12 1.83 6.67 -83.45 -0.56 1.27 16 10 N -0.25 -4.48 3.52 -10.45 -0.04 -4.51 16 11 C -0.04 -0.62 10.78 -16.80 -0.18 -0.80 16 12 C -0.18 -3.43 10.80 -39.35 -0.42 -3.85 16 13 C 0.02 0.57 6.76 -82.76 -0.56 0.01 16 14 C 0.50 14.07 7.62 -12.47 -0.09 13.98 16 15 O -0.59 -17.91 16.55 5.27 0.09 -17.83 16 16 N -0.42 -11.72 3.02 -123.39 -0.37 -12.09 16 17 C 0.11 2.85 7.78 59.84 0.47 3.31 16 18 C -0.32 -9.34 9.27 -15.00 -0.14 -9.48 16 19 H 0.11 3.25 7.42 -52.48 -0.39 2.86 16 20 C 0.04 1.15 4.52 -17.45 -0.08 1.07 16 21 N -0.84 -22.90 11.73 55.50 0.65 -22.25 16 22 Si 0.91 20.66 29.66 -169.99 -5.04 15.62 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 N -0.24 -5.23 6.69 33.41 0.22 -5.01 16 27 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 28 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.14 1.18 6.30 -52.48 -0.33 0.85 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.07 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.14 1.24 6.65 -52.49 -0.35 0.89 16 36 H 0.17 1.89 6.96 -52.48 -0.37 1.53 16 37 H 0.16 2.83 8.06 -52.48 -0.42 2.41 16 38 H 0.05 1.29 5.91 -51.93 -0.31 0.98 16 39 H 0.06 1.47 6.63 -51.93 -0.34 1.13 16 40 H 0.05 1.38 8.09 -51.93 -0.42 0.96 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -35.42 345.54 -6.61 -42.03 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.97 Total: 2.04 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.19 Total: 1.40 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.47 Total: -43.87 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.08 Total: -22.42 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.04 Total: 15.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.42 -6.61 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263823252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.243 kcal (2) G-P(sol) polarization free energy of solvation -35.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds