Wall clock time and date at job start Tue Mar 31 2020 11:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35920 * 116.99947 * 2 1 4 4 C 1.38597 * 120.09000 * 0.02562 * 3 2 1 5 5 C 1.38202 * 120.01565 * 180.02562 * 4 3 2 6 6 C 1.38313 * 120.18743 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91587 * 180.02562 * 6 5 4 8 8 C 1.38153 * 120.17305 * 359.97438 * 6 5 4 9 9 C 1.38765 * 119.98582 * 0.25796 * 8 6 5 10 10 N 1.40161 * 120.09211 * 179.73933 * 9 8 6 11 11 C 1.35855 * 124.95510 * 359.72307 * 10 9 8 12 12 C 1.35343 * 107.14644 * 179.83256 * 11 10 9 13 13 C 1.41562 * 105.56036 * 0.40535 * 12 11 10 14 14 C 1.47541 * 126.45586 * 179.75810 * 13 12 11 15 15 O 1.21614 * 119.99629 * 4.78645 * 14 13 12 16 16 N 1.34778 * 119.99757 * 184.78364 * 14 13 12 17 17 C 1.46494 * 120.00312 * 5.41375 * 16 14 13 18 18 C 1.36905 * 119.99478 * 185.41449 * 16 14 13 19 19 H 1.08003 * 119.99840 * 344.99161 * 18 16 14 20 20 C 1.39024 * 119.99868 * 164.99792 * 18 16 14 21 21 N 1.31377 * 119.99725 * 326.16259 * 20 18 16 22 22 Si 1.86802 * 119.99885 * 146.16184 * 20 18 16 23 23 H 1.48502 * 109.46989 * 94.99366 * 22 20 18 24 24 H 1.48499 * 109.46968 * 214.99054 * 22 20 18 25 25 H 1.48496 * 109.47300 * 334.99699 * 22 20 18 26 26 N 1.28479 * 124.95344 * 180.02562 * 10 9 8 27 27 H 1.08998 * 109.47579 * 59.99873 * 1 2 3 28 28 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46923 * 299.99069 * 1 2 3 30 30 H 1.08004 * 119.99292 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.90677 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47288 * 269.97707 * 7 6 5 33 33 H 1.09004 * 109.46800 * 29.97329 * 7 6 5 34 34 H 1.09000 * 109.47336 * 149.97464 * 7 6 5 35 35 H 1.07999 * 120.00766 * 179.97438 * 8 6 5 36 36 H 1.08003 * 126.42246 * 359.97438 * 11 10 9 37 37 H 1.08008 * 127.22186 * 180.14793 * 12 11 10 38 38 H 1.08997 * 109.47191 * 35.86660 * 17 16 14 39 39 H 1.08998 * 109.47341 * 155.86795 * 17 16 14 40 40 H 1.08997 * 109.47120 * 275.87092 * 17 16 14 41 41 H 0.97002 * 119.99361 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2930 2.3746 0.0005 5 6 1.9220 3.6052 0.0000 6 6 3.3031 3.6803 -0.0005 7 6 3.9826 5.0254 -0.0005 8 6 4.0613 2.5254 0.0000 9 6 3.4372 1.2861 -0.0043 10 7 4.2043 0.1130 -0.0093 11 6 5.5622 0.0710 -0.0158 12 6 5.9210 -1.2340 -0.0152 13 6 4.7067 -1.9617 -0.0178 14 6 4.5647 -3.4303 -0.0233 15 8 5.5510 -4.1368 0.0618 16 7 3.3421 -3.9887 -0.1225 17 6 2.1664 -3.1433 -0.3441 18 6 3.1990 -5.3461 -0.0164 19 1 4.0637 -5.9882 -0.0966 20 6 1.9405 -5.8979 0.1947 21 7 1.0537 -5.2535 0.9187 22 14 1.5106 -7.5557 -0.5514 23 1 1.7577 -8.6269 0.4470 24 1 0.0784 -7.5655 -0.9436 25 1 2.3539 -7.7926 -1.7505 26 7 3.7258 -1.0793 -0.0141 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2144 2.3196 0.0005 31 1 1.3335 4.5107 0.0008 32 1 4.1464 5.3497 -1.0282 33 1 3.3520 5.7510 0.5133 34 1 4.9408 4.9484 0.5133 35 1 5.1395 2.5872 -0.0008 36 1 6.2300 0.9197 -0.0183 37 1 6.9235 -1.6360 -0.0171 38 1 2.4344 -2.3119 -0.9960 39 1 1.3781 -3.7326 -0.8122 40 1 1.8121 -2.7561 0.6113 41 1 0.1756 -5.6384 1.0656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263823252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:59 Heat of formation + Delta-G solvation = 44.196399 kcal Electronic energy + Delta-G solvation = -26400.235633 eV Core-core repulsion = 22669.003548 eV Total energy + Delta-G solvation = -3731.232085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.73995 -41.07300 -40.01578 -38.67008 -36.71156 -34.87060 -33.78868 -32.72745 -31.73921 -30.56174 -28.77840 -28.13431 -26.98810 -26.75539 -24.92158 -23.83207 -21.90561 -21.72668 -20.60726 -19.43962 -18.97336 -18.18318 -17.78888 -17.26246 -17.07706 -16.68022 -16.41258 -16.05246 -15.58558 -15.49556 -15.41448 -14.80413 -14.57932 -14.48100 -14.43011 -13.96494 -13.75776 -13.39605 -13.34514 -13.13010 -13.05196 -12.84117 -12.68996 -12.46121 -12.38124 -12.11969 -11.99335 -11.79293 -11.42742 -11.03697 -10.96562 -10.62868 -10.14314 -9.80959 -9.59922 -8.79862 -8.53318 -5.90155 -0.20450 0.30397 0.91678 1.35943 1.39483 1.42486 1.52867 1.58153 2.25752 2.36863 2.45538 2.68445 3.02881 3.08207 3.37516 3.77268 3.84726 3.94077 4.08365 4.18897 4.29153 4.34518 4.38219 4.39438 4.61147 4.72474 4.75334 4.78418 4.82926 4.89669 4.95152 4.96898 5.02762 5.22051 5.24792 5.28969 5.43558 5.44844 5.55145 5.74612 5.96866 6.07085 6.40631 6.49337 6.98010 7.12890 7.37548 7.99512 8.53399 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.004016 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.443998 B = 6970.579067 C = 8300.634919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.312 6.312 3 C 0.106 3.894 4 C -0.190 4.190 5 C -0.074 4.074 6 C -0.103 4.103 7 C -0.106 4.106 8 C -0.091 4.091 9 C 0.069 3.931 10 N -0.238 5.238 11 C -0.008 4.008 12 C -0.199 4.199 13 C -0.026 4.026 14 C 0.493 3.507 15 O -0.633 6.633 16 N -0.433 5.433 17 C 0.144 3.856 18 C -0.373 4.373 19 H 0.079 0.921 20 C 0.014 3.986 21 N -0.861 5.861 22 Si 0.983 3.017 23 H -0.270 1.270 24 H -0.260 1.260 25 H -0.271 1.271 26 N -0.254 5.254 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.232 0.768 37 H 0.166 0.834 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 25.498 -2.872 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.225 6.225 3 C 0.058 3.942 4 C -0.209 4.209 5 C -0.092 4.092 6 C -0.104 4.104 7 C -0.162 4.162 8 C -0.111 4.111 9 C -0.022 4.022 10 N -0.020 5.020 11 C -0.147 4.147 12 C -0.227 4.227 13 C -0.185 4.185 14 C 0.283 3.717 15 O -0.521 6.521 16 N -0.148 5.148 17 C 0.001 3.999 18 C -0.500 4.500 19 H 0.096 0.904 20 C -0.192 4.192 21 N -0.496 5.496 22 Si 0.804 3.196 23 H -0.195 1.195 24 H -0.184 1.184 25 H -0.195 1.195 26 N -0.088 5.088 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.175 0.825 31 H 0.183 0.817 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.179 0.821 36 H 0.249 0.751 37 H 0.184 0.816 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.039 25.081 -2.743 25.552 hybrid contribution 0.360 -1.458 0.020 1.502 sum -3.678 23.624 -2.724 24.063 Atomic orbital electron populations 1.23288 0.77229 1.04601 1.02443 1.86474 1.22599 1.25816 1.87567 1.19136 0.90466 0.86683 0.97891 1.21458 1.01343 0.90917 1.07201 1.21380 0.94288 0.97672 0.95851 1.20009 0.93659 0.95642 1.01086 1.20797 1.00882 0.91052 1.03519 1.20905 1.01776 0.87936 1.00439 1.17597 0.88017 0.83927 1.12682 1.43069 1.05432 1.03743 1.49729 1.23495 0.84294 0.99645 1.07314 1.21952 0.98946 0.92262 1.09511 1.22294 0.92527 0.93642 1.10042 1.17250 0.83892 0.85388 0.85217 1.90511 1.38756 1.63064 1.59775 1.43794 1.06014 1.07126 1.57895 1.21317 0.86781 0.92008 0.99814 1.19616 0.95588 0.81754 1.53025 0.90352 1.26115 0.95100 1.03718 0.94298 1.70269 1.07518 1.42515 1.29316 0.85142 0.78155 0.77131 0.79125 1.19497 1.18382 1.19511 1.74197 1.25339 0.89614 1.19612 0.90685 0.88909 0.91156 0.82463 0.81749 0.89977 0.89804 0.90539 0.82093 0.75139 0.81603 0.91711 0.93147 0.94446 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.31 -10.45 8.50 -92.65 -0.79 -11.23 16 3 C 0.11 2.99 6.69 22.62 0.15 3.14 16 4 C -0.19 -3.59 9.03 22.35 0.20 -3.39 16 5 C -0.07 -1.01 9.69 22.28 0.22 -0.79 16 6 C -0.10 -1.44 5.88 -19.87 -0.12 -1.56 16 7 C -0.11 -0.73 10.01 71.23 0.71 -0.02 16 8 C -0.09 -1.71 9.08 22.38 0.20 -1.51 16 9 C 0.07 1.96 6.67 38.20 0.25 2.22 16 10 N -0.24 -8.48 3.52 -186.99 -0.66 -9.14 16 11 C -0.01 -0.25 10.78 83.40 0.90 0.65 16 12 C -0.20 -7.89 10.80 22.42 0.24 -7.65 16 13 C -0.03 -1.28 6.76 42.40 0.29 -0.99 16 14 C 0.49 29.62 7.62 86.70 0.66 30.28 16 15 O -0.63 -41.42 16.55 -4.08 -0.07 -41.49 16 16 N -0.43 -26.15 3.02 -662.54 -2.00 -28.15 16 17 C 0.14 7.66 7.78 127.77 0.99 8.65 16 18 C -0.37 -23.29 9.27 84.09 0.78 -22.51 16 19 H 0.08 5.20 7.42 -2.91 -0.02 5.18 16 20 C 0.01 0.79 4.52 84.95 0.38 1.18 16 21 N -0.86 -48.13 11.73 21.68 0.25 -47.88 16 22 Si 0.98 43.41 29.66 68.60 2.03 45.44 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 N -0.25 -11.42 6.69 -48.20 -0.32 -11.75 16 27 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 1.35 7.66 -2.38 -0.02 1.33 16 30 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 31 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.36 8.08 -2.38 -0.02 0.34 16 34 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 35 H 0.16 2.10 6.65 -2.91 -0.02 2.08 16 36 H 0.23 3.99 6.96 -2.91 -0.02 3.97 16 37 H 0.17 6.11 8.06 -2.91 -0.02 6.09 16 38 H 0.06 3.26 5.91 -2.39 -0.01 3.25 16 39 H 0.05 2.67 6.63 -2.39 -0.02 2.65 16 40 H 0.04 2.06 8.09 -2.39 -0.02 2.04 16 41 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -85.31 345.54 6.50 -78.81 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.06 Total: 16.12 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.98 Total: 9.26 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -2.73 Total: -96.91 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.85 Total: -52.72 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -85.31 6.50 -78.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263823252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.011 kcal (2) G-P(sol) polarization free energy of solvation -85.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds