Wall clock time and date at job start Tue Mar 31 2020 11:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38548 * 119.80455 * 2 1 4 4 C 1.37783 * 120.30237 * 179.97438 * 3 2 1 5 5 C 1.39711 * 119.90826 * 0.02562 * 4 3 2 6 6 C 1.47511 * 120.19426 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00103 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99950 * 359.97438 * 6 5 4 9 9 C 1.40090 * 119.99944 * 179.97438 * 8 6 5 10 10 C 1.40425 * 125.97611 * 359.72381 * 9 8 6 11 11 C 1.35240 * 107.86693 * 179.85831 * 10 9 8 12 12 N 1.34971 * 107.86343 * 0.39621 * 11 10 9 13 13 C 1.46494 * 125.97274 * 179.71505 * 12 11 10 14 14 C 1.50705 * 109.47473 * 125.01867 * 13 12 11 15 15 H 1.07997 * 119.99293 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99964 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00023 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99681 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47060 * 119.99983 * 18 16 14 21 21 H 1.48500 * 109.46740 * 239.99874 * 18 16 14 22 22 N 1.31233 * 125.97589 * 180.02562 * 9 8 6 23 23 C 1.40157 * 119.61424 * 0.02562 * 5 4 3 24 24 O 1.35651 * 120.14818 * 179.97438 * 23 5 4 25 25 C 1.38062 * 119.80360 * 179.72774 * 2 1 3 26 26 C 1.50694 * 119.95809 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47152 * 89.99807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 329.99908 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99888 * 1 2 3 30 30 H 1.07999 * 119.84927 * 0.02562 * 3 2 1 31 31 H 1.08009 * 120.04512 * 180.02562 * 4 3 2 32 32 H 0.96998 * 119.99929 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06822 * 0.02562 * 10 9 8 34 34 H 1.07997 * 126.06974 * 180.11981 * 11 10 9 35 35 H 1.09007 * 109.46796 * 245.01293 * 13 12 11 36 36 H 1.08994 * 109.47382 * 5.00935 * 13 12 11 37 37 H 0.97008 * 119.99136 * 180.02562 * 17 16 14 38 38 H 0.96698 * 114.00316 * 89.99856 * 24 23 5 39 39 H 1.08999 * 109.47554 * 89.99318 * 26 25 2 40 40 H 1.08994 * 109.47427 * 210.00209 * 26 25 2 41 41 H 1.09004 * 109.47023 * 329.99519 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5734 1.2142 0.0005 5 6 4.2806 0.0092 0.0005 6 6 5.7557 0.0147 0.0005 7 8 6.3676 -1.0362 0.0001 8 7 6.4252 1.1844 0.0000 9 6 7.8261 1.1895 0.0005 10 6 8.6552 0.0562 0.0071 11 6 9.9391 0.4813 0.0021 12 7 9.9283 1.8310 0.0016 13 6 11.1070 2.7009 0.0028 14 6 11.0285 3.6549 -1.1613 15 1 10.1851 3.6165 -1.8348 16 6 12.0338 4.5757 -1.3669 17 7 13.0610 4.6218 -0.5470 18 14 11.9368 5.7576 -2.8103 19 1 10.6906 5.5021 -3.5763 20 1 11.9311 7.1546 -2.3066 21 1 13.1118 5.5553 -3.6955 22 7 8.5931 2.2544 0.0006 23 6 3.5802 -1.2048 -0.0006 24 8 4.2558 -2.3811 -0.0011 25 6 2.1932 -1.1980 0.0057 26 6 1.4343 -2.4999 0.0125 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5138 30 1 1.6500 2.1342 0.0004 31 1 4.1061 2.1538 0.0009 32 1 5.9371 2.0226 0.0000 33 1 8.3261 -0.9724 0.0122 34 1 10.8171 -0.1475 0.0033 35 1 11.1404 3.2662 0.9342 36 1 12.0073 2.0930 -0.0857 37 1 13.7681 5.2700 -0.6916 38 1 4.4514 -2.7228 0.8821 39 1 1.2508 -2.8189 -1.0135 40 1 2.0204 -3.2594 0.5298 41 1 0.4827 -2.3630 0.5261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266492683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:45 Heat of formation + Delta-G solvation = 27.980755 kcal Electronic energy + Delta-G solvation = -24907.595125 eV Core-core repulsion = 21175.659877 eV Total energy + Delta-G solvation = -3731.935248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96933 -40.28111 -38.70995 -37.13716 -34.73215 -33.90570 -33.21258 -31.38417 -30.88136 -29.30561 -28.17595 -27.18183 -26.39176 -23.58979 -22.59598 -22.15718 -21.14840 -20.25120 -19.32633 -18.25741 -17.34001 -16.82748 -16.57205 -16.15890 -15.65114 -15.23585 -14.95332 -14.88207 -14.53433 -14.21001 -14.01636 -13.79291 -13.44944 -13.21688 -13.05801 -12.79065 -12.66198 -12.34951 -12.23482 -12.00649 -11.80656 -11.73768 -11.68342 -11.05134 -10.90160 -10.78918 -10.40792 -10.25851 -9.97268 -9.52809 -9.46835 -8.99370 -8.86346 -8.63582 -8.11344 -7.44781 -6.24308 -4.29180 0.50696 0.93664 2.48711 2.76885 2.92022 3.22528 3.29961 3.36263 3.37358 3.82951 3.86604 3.96979 4.32165 4.37818 4.39521 4.60008 4.70294 4.82403 5.08301 5.10893 5.12604 5.19094 5.32608 5.39464 5.45117 5.55588 5.60361 5.78856 5.84141 5.88394 5.98981 6.17231 6.28629 6.43639 6.50990 6.64562 6.86960 7.05603 7.41371 7.50982 7.59287 7.71858 7.89464 8.05364 8.28081 8.64089 8.80922 9.36534 10.84451 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002556 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.958241 B =10951.372092 C =11809.990557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.048 4.048 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.161 4.161 6 C 0.563 3.437 7 O -0.500 6.500 8 N -0.628 5.628 9 C 0.258 3.742 10 C -0.286 4.286 11 C 0.051 3.949 12 N -0.319 5.319 13 C 0.258 3.742 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 N -0.305 5.305 23 C 0.174 3.826 24 O -0.473 6.473 25 C -0.126 4.126 26 C -0.109 4.109 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.408 0.592 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.394 0.606 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.478 -11.039 3.805 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.152 4.152 4 C -0.091 4.091 5 C -0.165 4.165 6 C 0.350 3.650 7 O -0.374 6.374 8 N -0.276 5.276 9 C 0.005 3.995 10 C -0.317 4.317 11 C -0.099 4.099 12 N -0.101 5.101 13 C 0.140 3.860 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 N -0.136 5.136 23 C 0.128 3.872 24 O -0.284 6.284 25 C -0.127 4.127 26 C -0.166 4.166 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.244 0.756 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.741 -10.316 3.243 26.087 hybrid contribution 0.057 0.413 -0.302 0.514 sum -23.684 -9.903 2.941 25.839 Atomic orbital electron populations 1.20949 0.90664 1.03302 1.02876 1.19851 0.96352 0.92072 0.96595 1.20957 0.93734 0.97873 1.02630 1.21272 0.94524 0.96818 0.96458 1.20242 0.92724 0.94181 1.09327 1.17933 0.86635 0.83235 0.77169 1.90740 1.68534 1.30885 1.47206 1.42345 1.03086 1.09471 1.72701 1.19062 0.83527 0.93379 1.03523 1.21536 0.90444 0.99827 1.19939 1.22568 0.99053 0.85822 1.02443 1.49082 1.04664 1.04666 1.51647 1.19754 0.77727 0.89187 0.99303 1.21298 1.07296 1.16936 1.11040 0.91253 1.24950 0.94846 0.97284 0.97053 1.69933 1.09933 1.36368 1.37134 0.86274 0.78194 0.80333 0.81722 1.19557 1.20690 1.20755 1.77330 0.88265 1.19959 1.28031 1.18215 0.88776 0.84809 0.95432 1.84760 1.76003 1.34318 1.33284 1.20034 0.92520 0.96114 1.03988 1.20715 0.99491 0.93557 1.02801 0.90546 0.91110 0.90758 0.85029 0.84985 0.75565 0.82216 0.81446 0.93702 0.92504 0.92388 0.74797 0.90856 0.91244 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.60 36.01 0.35 -0.27 16 2 C -0.05 -0.38 5.88 -104.57 -0.62 -1.00 16 3 C -0.13 -1.09 9.67 -39.63 -0.38 -1.47 16 4 C -0.07 -0.70 9.53 -39.20 -0.37 -1.08 16 5 C -0.16 -2.00 5.89 -104.85 -0.62 -2.62 16 6 C 0.56 8.89 7.73 -12.48 -0.10 8.79 16 7 O -0.50 -9.11 12.28 -16.61 -0.20 -9.31 16 8 N -0.63 -10.32 5.40 -12.08 -0.07 -10.38 16 9 C 0.26 5.34 8.11 -154.44 -1.25 4.08 16 10 C -0.29 -5.82 9.60 -39.83 -0.38 -6.21 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 12 N -0.32 -7.52 3.67 -62.56 -0.23 -7.75 16 13 C 0.26 6.61 6.26 -5.19 -0.03 6.57 16 14 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 15 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.44 13.29 55.43 0.74 -24.70 16 18 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 N -0.30 -7.14 12.42 31.43 0.39 -6.75 16 23 C 0.17 2.01 6.69 -38.69 -0.26 1.75 16 24 O -0.47 -5.55 10.63 -40.53 -0.43 -5.98 16 25 C -0.13 -1.15 5.89 -104.52 -0.62 -1.76 16 26 C -0.11 -0.73 9.37 36.00 0.34 -0.39 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.07 0.30 5.91 -51.93 -0.31 0.00 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 1.07 6.40 -52.48 -0.34 0.73 16 32 H 0.41 5.52 6.85 -40.82 -0.28 5.24 16 33 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 34 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 35 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.39 3.15 9.06 45.56 0.41 3.56 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.44 7.54 -51.93 -0.39 0.05 16 41 H 0.07 0.34 5.92 -51.93 -0.31 0.03 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -34.40 349.29 -8.13 -42.53 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.02 Total: 6.86 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.56 Total: -6.25 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.83 Total: -49.58 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.63 Total: -15.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.40 -8.13 -42.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266492683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.515 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds