Wall clock time and date at job start Tue Mar 31 2020 11:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38548 * 119.80455 * 2 1 4 4 C 1.37783 * 120.30237 * 179.97438 * 3 2 1 5 5 C 1.39711 * 119.90826 * 0.02562 * 4 3 2 6 6 C 1.47511 * 120.19426 * 179.97438 * 5 4 3 7 7 O 1.21605 * 120.00103 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99950 * 359.97438 * 6 5 4 9 9 C 1.40090 * 119.99944 * 179.97438 * 8 6 5 10 10 C 1.40425 * 125.97611 * 359.72381 * 9 8 6 11 11 C 1.35240 * 107.86693 * 179.85831 * 10 9 8 12 12 N 1.34971 * 107.86343 * 0.39621 * 11 10 9 13 13 C 1.46494 * 125.97274 * 179.71505 * 12 11 10 14 14 C 1.50705 * 109.47473 * 125.01867 * 13 12 11 15 15 H 1.07997 * 119.99293 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99964 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00023 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99681 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47060 * 119.99983 * 18 16 14 21 21 H 1.48500 * 109.46740 * 239.99874 * 18 16 14 22 22 N 1.31233 * 125.97589 * 180.02562 * 9 8 6 23 23 C 1.40157 * 119.61424 * 0.02562 * 5 4 3 24 24 O 1.35651 * 120.14818 * 179.97438 * 23 5 4 25 25 C 1.38062 * 119.80360 * 179.72774 * 2 1 3 26 26 C 1.50694 * 119.95809 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47152 * 89.99807 * 1 2 3 28 28 H 1.09001 * 109.46980 * 329.99908 * 1 2 3 29 29 H 1.09004 * 109.47113 * 209.99888 * 1 2 3 30 30 H 1.07999 * 119.84927 * 0.02562 * 3 2 1 31 31 H 1.08009 * 120.04512 * 180.02562 * 4 3 2 32 32 H 0.96998 * 119.99929 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06822 * 0.02562 * 10 9 8 34 34 H 1.07997 * 126.06974 * 180.11981 * 11 10 9 35 35 H 1.09007 * 109.46796 * 245.01293 * 13 12 11 36 36 H 1.08994 * 109.47382 * 5.00935 * 13 12 11 37 37 H 0.97008 * 119.99136 * 180.02562 * 17 16 14 38 38 H 0.96698 * 114.00316 * 89.99856 * 24 23 5 39 39 H 1.08999 * 109.47554 * 89.99318 * 26 25 2 40 40 H 1.08994 * 109.47427 * 210.00209 * 26 25 2 41 41 H 1.09004 * 109.47023 * 329.99519 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5734 1.2142 0.0005 5 6 4.2806 0.0092 0.0005 6 6 5.7557 0.0147 0.0005 7 8 6.3676 -1.0362 0.0001 8 7 6.4252 1.1844 0.0000 9 6 7.8261 1.1895 0.0005 10 6 8.6552 0.0562 0.0071 11 6 9.9391 0.4813 0.0021 12 7 9.9283 1.8310 0.0016 13 6 11.1070 2.7009 0.0028 14 6 11.0285 3.6549 -1.1613 15 1 10.1851 3.6165 -1.8348 16 6 12.0338 4.5757 -1.3669 17 7 13.0610 4.6218 -0.5470 18 14 11.9368 5.7576 -2.8103 19 1 10.6906 5.5021 -3.5763 20 1 11.9311 7.1546 -2.3066 21 1 13.1118 5.5553 -3.6955 22 7 8.5931 2.2544 0.0006 23 6 3.5802 -1.2048 -0.0006 24 8 4.2558 -2.3811 -0.0011 25 6 2.1932 -1.1980 0.0057 26 6 1.4343 -2.4999 0.0125 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5138 30 1 1.6500 2.1342 0.0004 31 1 4.1061 2.1538 0.0009 32 1 5.9371 2.0226 0.0000 33 1 8.3261 -0.9724 0.0122 34 1 10.8171 -0.1475 0.0033 35 1 11.1404 3.2662 0.9342 36 1 12.0073 2.0930 -0.0857 37 1 13.7681 5.2700 -0.6916 38 1 4.4514 -2.7228 0.8821 39 1 1.2508 -2.8189 -1.0135 40 1 2.0204 -3.2594 0.5298 41 1 0.4827 -2.3630 0.5261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266492683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:44 Heat of formation + Delta-G solvation = 6.202726 kcal Electronic energy + Delta-G solvation = -24908.539491 eV Core-core repulsion = 21175.659877 eV Total energy + Delta-G solvation = -3732.879615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32145 -41.45216 -39.88651 -37.93342 -36.22309 -35.37101 -34.48761 -32.73740 -31.96520 -30.98336 -29.08617 -28.42130 -27.54112 -25.16661 -23.94831 -22.90415 -22.44083 -21.77346 -20.65566 -19.16519 -18.70750 -18.45096 -18.01435 -17.43051 -16.69415 -16.64003 -16.34478 -16.02151 -15.82203 -15.44640 -15.16632 -14.74014 -14.52703 -14.28231 -14.21435 -13.82584 -13.71177 -13.67883 -13.55087 -13.24650 -12.95753 -12.75092 -12.62726 -12.35860 -12.32623 -12.26202 -12.07145 -11.71063 -11.57775 -11.40131 -10.81278 -10.73299 -9.81712 -9.69665 -9.59380 -9.13043 -8.34573 -6.48578 -0.33392 0.23292 1.03128 1.31699 1.36411 1.37765 1.51250 1.56610 2.17363 2.27439 2.39609 2.67918 2.97194 3.20440 3.46402 3.72334 3.89761 3.97471 4.10791 4.20657 4.25002 4.51635 4.57121 4.72179 4.75110 4.79258 4.86966 4.88748 4.90569 4.94869 5.00672 5.08526 5.17686 5.21739 5.27556 5.34925 5.55298 5.55840 5.78138 5.82528 5.88137 6.20251 6.27386 6.63311 6.78687 6.96608 7.05773 7.21460 8.73353 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.002556 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.958241 B =10951.372092 C =11809.990557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.041 4.041 3 C -0.133 4.133 4 C -0.074 4.074 5 C -0.188 4.188 6 C 0.563 3.437 7 O -0.530 6.530 8 N -0.623 5.623 9 C 0.265 3.735 10 C -0.294 4.294 11 C 0.058 3.942 12 N -0.343 5.343 13 C 0.272 3.728 14 C -0.547 4.547 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.270 1.270 22 N -0.344 5.344 23 C 0.160 3.840 24 O -0.490 6.490 25 C -0.132 4.132 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.144 0.856 32 H 0.420 0.580 33 H 0.167 0.833 34 H 0.203 0.797 35 H 0.023 0.977 36 H 0.060 0.940 37 H 0.273 0.727 38 H 0.405 0.595 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.006 -10.886 3.307 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.041 4.041 3 C -0.151 4.151 4 C -0.092 4.092 5 C -0.192 4.192 6 C 0.353 3.647 7 O -0.406 6.406 8 N -0.273 5.273 9 C 0.011 3.989 10 C -0.325 4.325 11 C -0.091 4.091 12 N -0.125 5.125 13 C 0.153 3.847 14 C -0.585 4.585 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.797 3.203 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.195 1.195 22 N -0.176 5.176 23 C 0.113 3.887 24 O -0.303 6.303 25 C -0.133 4.133 26 C -0.165 4.165 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.259 0.741 33 H 0.184 0.816 34 H 0.220 0.780 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.265 0.735 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.297 -10.169 2.761 28.330 hybrid contribution 0.674 0.270 -0.105 0.734 sum -25.623 -9.898 2.656 27.597 Atomic orbital electron populations 1.21054 0.88126 1.04728 1.03873 1.20310 0.98160 0.91464 0.94170 1.21326 0.93033 0.99319 1.01412 1.21470 0.95522 0.96288 0.95963 1.20102 0.90400 0.95853 1.12836 1.18562 0.88067 0.82347 0.75732 1.90699 1.69517 1.31751 1.48624 1.42468 1.01429 1.10689 1.72731 1.19411 0.85279 0.92878 1.01370 1.21721 0.90532 1.00058 1.20175 1.23177 1.00478 0.84899 1.00546 1.48864 1.04348 1.05463 1.53818 1.19366 0.78785 0.89057 0.97466 1.21415 1.07088 1.18317 1.11717 0.93085 1.25743 0.94312 0.98604 0.99556 1.70004 1.10411 1.37056 1.38405 0.85288 0.78185 0.78344 0.78525 1.20008 1.19698 1.19476 1.77251 0.88557 1.21424 1.30319 1.18492 0.89845 0.84308 0.96057 1.84711 1.76393 1.34653 1.34542 1.20306 0.91594 0.97798 1.03594 1.20778 1.00218 0.92333 1.03142 0.89529 0.89576 0.89552 0.82128 0.83837 0.74113 0.81572 0.78015 0.95924 0.92252 0.91801 0.73531 0.90815 0.91272 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.60 71.24 0.68 -0.06 16 2 C -0.04 -0.53 5.88 -19.83 -0.12 -0.65 16 3 C -0.13 -1.80 9.67 22.24 0.22 -1.58 16 4 C -0.07 -1.35 9.53 22.52 0.21 -1.13 16 5 C -0.19 -4.63 5.89 -20.01 -0.12 -4.75 16 6 C 0.56 18.06 7.73 86.69 0.67 18.73 16 7 O -0.53 -19.76 12.28 16.87 0.21 -19.56 16 8 N -0.62 -20.77 5.40 -310.40 -1.68 -22.44 16 9 C 0.26 11.16 8.11 133.35 1.08 12.24 16 10 C -0.29 -12.08 9.60 22.11 0.21 -11.86 16 11 C 0.06 2.36 11.44 83.52 0.96 3.31 16 12 N -0.34 -16.57 3.67 -351.85 -1.29 -17.86 16 13 C 0.27 14.34 6.26 85.64 0.54 14.88 16 14 C -0.55 -31.34 9.24 25.60 0.24 -31.10 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.02 1.02 5.46 84.65 0.46 1.48 16 17 N -0.92 -52.47 13.29 21.45 0.28 -52.19 16 18 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 N -0.34 -16.57 12.42 -54.48 -0.68 -17.25 16 23 C 0.16 3.61 6.69 22.85 0.15 3.76 16 24 O -0.49 -11.67 10.63 -68.74 -0.73 -12.40 16 25 C -0.13 -2.18 5.89 -19.80 -0.12 -2.29 16 26 C -0.11 -1.22 9.37 71.23 0.67 -0.55 16 27 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.09 0.31 8.08 -2.39 -0.02 0.29 16 29 H 0.09 0.35 5.91 -2.38 -0.01 0.33 16 30 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.14 2.15 6.40 -2.91 -0.02 2.13 16 32 H 0.42 11.46 6.85 -92.71 -0.64 10.82 16 33 H 0.17 6.63 5.91 -2.91 -0.02 6.62 16 34 H 0.20 6.51 8.06 -2.91 -0.02 6.48 16 35 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.06 3.05 8.07 -2.39 -0.02 3.03 16 37 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 38 H 0.40 6.74 9.06 -74.06 -0.67 6.07 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.78 7.54 -2.39 -0.02 0.76 16 41 H 0.09 0.60 5.92 -2.39 -0.01 0.58 16 Total: -1.00 -75.25 349.29 3.68 -71.57 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.20 Total: 23.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.74 Total: 0.42 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -3.36 Total: -109.74 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.52 Total: -31.96 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.25 3.68 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266492683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.772 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds