Wall clock time and date at job start Tue Mar 31 2020 11:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38026 * 119.99876 * 2 1 4 4 C 1.38206 * 120.21623 * 179.74402 * 3 2 1 5 5 C 1.38992 * 120.22827 * 0.23501 * 4 3 2 6 6 N 1.39960 * 120.00540 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00445 * 144.79935 * 6 5 4 8 8 O 1.21590 * 119.99830 * 4.28575 * 7 6 5 9 9 N 1.34780 * 120.00070 * 184.28387 * 7 6 5 10 10 C 1.46500 * 119.99628 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46861 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46982 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99891 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00085 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46933 * 59.99642 * 16 14 12 18 18 H 1.48498 * 109.46962 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46791 * 299.99344 * 16 14 12 20 20 C 1.38586 * 119.99781 * 0.02562 * 5 4 3 21 21 C 1.39492 * 119.78018 * 0.02562 * 20 5 4 22 22 C 1.47844 * 120.10927 * 179.97438 * 21 20 5 23 23 N 1.31212 * 125.72620 * 49.26250 * 22 21 20 24 24 C 1.34158 * 108.64717 * 179.89827 * 23 22 21 25 25 C 1.34543 * 107.83615 * 0.37042 * 24 23 22 26 26 O 1.34422 * 125.72419 * 229.58085 * 22 21 20 27 27 H 1.09007 * 109.46800 * 85.16073 * 1 2 3 28 28 H 1.08995 * 109.47426 * 205.15438 * 1 2 3 29 29 H 1.09000 * 109.47515 * 325.16588 * 1 2 3 30 30 H 1.08001 * 119.89382 * 0.02562 * 3 2 1 31 31 H 1.08004 * 119.88982 * 180.25772 * 4 3 2 32 32 H 0.97003 * 119.99978 * 324.80542 * 6 5 4 33 33 H 0.96994 * 120.00290 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47185 * 299.99910 * 10 9 7 35 35 H 1.08998 * 109.47409 * 59.99655 * 10 9 7 36 36 H 1.08995 * 109.47063 * 299.99609 * 11 10 9 37 37 H 1.09006 * 109.47148 * 59.99983 * 11 10 9 38 38 H 0.97001 * 120.00325 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.11130 * 180.02562 * 20 5 4 40 40 H 1.07999 * 126.07826 * 180.10791 * 24 23 22 41 41 H 1.07998 * 126.36166 * 179.77568 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1954 0.0000 4 6 3.5792 1.2006 0.0053 5 6 4.2835 0.0023 0.0058 6 7 5.6830 0.0131 0.0118 7 6 6.3614 -0.9368 0.6854 8 8 5.7608 -1.8472 1.2229 9 7 7.7057 -0.8776 0.7634 10 6 8.4431 -1.9105 1.4952 11 6 9.9419 -1.6101 1.4298 12 6 10.7004 -2.6723 2.1831 13 1 10.1669 -3.4810 2.6605 14 6 12.0756 -2.6117 2.2630 15 7 12.7253 -1.6273 1.6813 16 14 13.0159 -3.9287 3.1962 17 1 12.7501 -5.2548 2.5832 18 1 14.4706 -3.6371 3.1328 19 1 12.5745 -3.9412 4.6140 20 6 3.5999 -1.2032 0.0004 21 6 2.2050 -1.2086 -0.0061 22 6 1.4683 -2.4905 -0.0125 23 7 1.6856 -3.5030 0.7933 24 6 0.8236 -4.4852 0.4900 25 6 0.0628 -4.0634 -0.5364 26 8 0.4677 -2.8165 -0.8487 27 1 -0.3633 0.0867 -1.0241 28 1 -0.3634 -0.9301 0.4368 29 1 -0.3634 0.8435 0.5870 30 1 1.6554 2.1297 0.0004 31 1 4.1138 2.1390 0.0095 32 1 6.1648 0.7043 -0.4689 33 1 8.1849 -0.1516 0.3344 34 1 8.1191 -1.9198 2.5359 35 1 8.2480 -2.8839 1.0453 36 1 10.2656 -1.6012 0.3890 37 1 10.1374 -0.6366 1.8795 38 1 13.6928 -1.5849 1.7372 39 1 4.1453 -2.1353 0.0012 40 1 0.7556 -5.4454 0.9796 41 1 -0.7259 -4.6206 -1.0202 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273265612.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:57 Heat of formation + Delta-G solvation = -9.805342 kcal Electronic energy + Delta-G solvation = -24671.342304 eV Core-core repulsion = 20937.768528 eV Total energy + Delta-G solvation = -3733.573777 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.29108 -41.72895 -39.97199 -36.90430 -36.10468 -35.81476 -34.88199 -33.15993 -32.71447 -31.22422 -30.11463 -27.65451 -26.42426 -25.09008 -23.62184 -23.34068 -22.74742 -22.17467 -21.62663 -19.69775 -19.14796 -18.44957 -17.80201 -17.70205 -16.95327 -16.54840 -16.52507 -16.22550 -16.20346 -15.61925 -15.36145 -15.11786 -14.94840 -14.61766 -14.47413 -14.26643 -14.11487 -13.37645 -13.24148 -13.16507 -12.93878 -12.76057 -12.54757 -12.45286 -12.34513 -12.25788 -11.68875 -11.60911 -11.52548 -11.36856 -11.10420 -10.60691 -10.40775 -10.10449 -9.57543 -9.00163 -8.24737 -6.34828 -0.22400 0.28028 0.62491 1.40993 1.43663 1.49642 1.53940 1.68251 1.73755 2.00903 2.40543 2.68879 3.10139 3.11205 3.24125 3.85388 3.90223 4.02698 4.06990 4.18556 4.30049 4.43596 4.47457 4.49104 4.64023 4.71472 4.79810 4.83841 4.85863 4.91052 5.09126 5.19449 5.21625 5.25284 5.27863 5.45272 5.49078 5.51955 5.58190 5.77347 5.93683 5.95420 6.16029 6.70581 6.77676 6.98458 7.34237 7.45373 8.86913 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002452 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.922594 B =11416.029545 C =12700.277393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.074 4.074 3 C -0.091 4.091 4 C -0.109 4.109 5 C 0.145 3.855 6 N -0.670 5.670 7 C 0.694 3.306 8 O -0.618 6.618 9 N -0.723 5.723 10 C 0.160 3.840 11 C 0.025 3.975 12 C -0.549 4.549 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.099 4.099 21 C -0.029 4.029 22 C 0.220 3.780 23 N -0.511 5.511 24 C -0.071 4.071 25 C -0.055 4.055 26 O -0.198 6.198 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.177 0.823 31 H 0.169 0.831 32 H 0.427 0.573 33 H 0.411 0.589 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.011 0.989 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.207 0.793 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.982 7.261 -8.687 30.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.076 4.076 3 C -0.109 4.109 4 C -0.129 4.129 5 C 0.050 3.950 6 N -0.320 5.320 7 C 0.394 3.606 8 O -0.498 6.498 9 N -0.378 5.378 10 C 0.036 3.964 11 C -0.012 4.012 12 C -0.587 4.587 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.121 4.121 21 C -0.030 4.030 22 C 0.016 3.984 23 N -0.241 5.241 24 C -0.210 4.210 25 C -0.125 4.125 26 O -0.083 6.083 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.195 0.805 31 H 0.186 0.814 32 H 0.267 0.733 33 H 0.247 0.753 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.224 0.776 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -27.790 6.513 -7.776 29.584 hybrid contribution 1.030 -0.760 -0.275 1.309 sum -26.761 5.753 -8.051 28.532 Atomic orbital electron populations 1.20844 0.88857 1.02987 1.03878 1.20279 0.97613 0.91195 0.98482 1.21160 0.92959 0.98086 0.98723 1.21449 0.94840 0.96592 1.00053 1.17502 0.81894 0.93838 1.01759 1.42339 1.04355 1.31551 1.53790 1.16200 0.82301 0.82515 0.79540 1.90940 1.68527 1.37103 1.53208 1.45183 1.04046 1.30771 1.57801 1.21126 0.91925 0.89078 0.94312 1.19118 0.88880 0.96622 0.96593 1.21430 0.92435 1.10597 1.34257 0.92460 1.25838 0.98676 0.98104 0.96386 1.70038 1.08630 1.32932 1.44848 0.85524 0.77280 0.79204 0.79208 1.19468 1.20427 1.19396 1.21106 0.92625 0.98590 0.99736 1.17145 0.90988 0.87221 1.07685 1.23882 0.89590 0.95964 0.88955 1.70798 1.25474 1.01588 1.26208 1.23960 0.95601 1.01121 1.00335 1.26096 1.03412 0.83082 0.99950 1.84586 1.42347 1.31308 1.50105 0.89155 0.93675 0.88461 0.80527 0.81361 0.73330 0.75297 0.93723 0.93865 0.97094 0.97009 0.92485 0.87324 0.77639 0.71643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.35 71.24 0.67 -0.88 16 2 C -0.07 -1.46 5.91 -19.59 -0.12 -1.57 16 3 C -0.09 -1.31 9.70 22.21 0.22 -1.10 16 4 C -0.11 -1.81 9.96 22.44 0.22 -1.59 16 5 C 0.15 3.73 6.29 38.11 0.24 3.97 16 6 N -0.67 -17.01 5.34 -317.28 -1.69 -18.70 16 7 C 0.69 24.81 8.40 179.05 1.50 26.31 16 8 O -0.62 -28.10 13.79 -4.00 -0.06 -28.15 16 9 N -0.72 -25.43 5.56 -478.52 -2.66 -28.09 16 10 C 0.16 7.05 5.61 86.38 0.48 7.54 16 11 C 0.03 1.29 5.09 29.85 0.15 1.44 16 12 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.01 0.50 5.46 84.66 0.46 0.97 16 15 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 16 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.10 -3.18 8.43 22.66 0.19 -2.99 16 21 C -0.03 -0.80 5.87 -20.11 -0.12 -0.92 16 22 C 0.22 6.45 6.46 87.33 0.56 7.02 16 23 N -0.51 -16.70 11.32 -305.08 -3.45 -20.16 16 24 C -0.07 -1.61 11.87 83.49 0.99 -0.62 16 25 C -0.06 -0.92 12.17 66.97 0.82 -0.10 16 26 O -0.20 -4.54 9.78 -8.27 -0.08 -4.62 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.04 0.80 6.50 -2.39 -0.02 0.78 16 29 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 30 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.43 7.07 8.84 -92.71 -0.82 6.25 16 33 H 0.41 11.74 8.49 -92.71 -0.79 10.95 16 34 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.11 4.41 6.23 -2.91 -0.02 4.39 16 40 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.27 1.19 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -81.88 356.79 0.35 -81.53 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.52 Total: 19.37 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.51 Total: 6.71 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -7.53 Total: -120.90 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.14 Total: -32.77 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.88 0.35 -81.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273265612.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.721 kcal (2) G-P(sol) polarization free energy of solvation -81.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds