Wall clock time and date at job start Tue Mar 31 2020 11:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 119.88526 * 2 1 4 4 C 1.37980 * 120.21762 * 179.72046 * 3 2 1 5 5 C 1.39625 * 119.99321 * 0.27810 * 4 3 2 6 6 C 1.47837 * 120.10949 * 180.02562 * 5 4 3 7 7 N 1.31211 * 125.72686 * 179.69408 * 6 5 4 8 8 C 1.34160 * 108.64912 * 179.89392 * 7 6 5 9 9 C 1.34538 * 107.83569 * 0.36862 * 8 7 6 10 10 O 1.34425 * 125.72496 * 359.97438 * 6 5 4 11 11 C 1.39447 * 119.77845 * 0.02562 * 5 4 3 12 12 C 1.38626 * 119.78292 * 359.97438 * 11 5 4 13 13 N 1.39964 * 119.99753 * 180.02562 * 12 11 5 14 14 C 1.34781 * 120.00058 * 24.83858 * 13 12 11 15 15 O 1.21581 * 120.00159 * 5.62082 * 14 13 12 16 16 N 1.34778 * 119.99803 * 185.61620 * 14 13 12 17 17 C 1.46502 * 119.99905 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47007 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46806 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99814 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99738 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00142 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46839 * 90.00079 * 23 21 19 25 25 H 1.48488 * 109.47372 * 210.00370 * 23 21 19 26 26 H 1.48505 * 109.46836 * 330.00611 * 23 21 19 27 27 H 1.09006 * 109.46733 * 89.99899 * 1 2 3 28 28 H 1.09003 * 109.47073 * 209.99801 * 1 2 3 29 29 H 1.08998 * 109.47018 * 330.00005 * 1 2 3 30 30 H 1.07996 * 119.89102 * 359.97438 * 3 2 1 31 31 H 1.07990 * 120.00449 * 180.25423 * 4 3 2 32 32 H 1.07998 * 126.08039 * 180.10463 * 8 7 6 33 33 H 1.08007 * 126.36272 * 179.77748 * 9 8 7 34 34 H 1.08000 * 120.10561 * 180.02562 * 11 5 4 35 35 H 0.97005 * 120.00019 * 204.83172 * 13 12 11 36 36 H 0.97003 * 120.00023 * 0.02562 * 16 14 13 37 37 H 1.08997 * 109.46774 * 300.00197 * 17 16 14 38 38 H 1.08999 * 109.46931 * 60.00089 * 17 16 14 39 39 H 1.08997 * 109.47350 * 299.99642 * 18 17 16 40 40 H 1.08999 * 109.47367 * 60.00155 * 18 17 16 41 41 H 0.97008 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1988 0.0000 4 6 3.5757 1.2068 0.0058 5 6 4.2807 0.0016 0.0059 6 6 5.7591 0.0072 0.0127 7 7 6.5292 -1.0551 0.0191 8 6 7.8102 -0.6563 0.0215 9 6 7.8229 0.6890 0.0247 10 8 6.5398 1.1014 0.0186 11 6 3.5857 -1.2073 -0.0005 12 6 2.1995 -1.2046 -0.0063 13 7 1.4973 -2.4154 -0.0122 14 6 2.0735 -3.5309 0.4778 15 8 3.1612 -3.4667 1.0174 16 7 1.4439 -4.7177 0.3698 17 6 2.0705 -5.9304 0.9019 18 6 1.1546 -7.1299 0.6506 19 6 1.7989 -8.3773 1.1985 20 1 2.7651 -8.3202 1.6777 21 6 1.1552 -9.5915 1.0872 22 7 1.7172 -10.6799 1.5658 23 14 -0.5156 -9.6904 0.2578 24 1 -0.3330 -9.9350 -1.1955 25 1 -1.2984 -10.8033 0.8525 26 1 -1.2435 -8.4114 0.4569 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1319 -0.0004 31 1 4.1103 2.1451 0.0099 32 1 8.6769 -1.3006 0.0251 33 1 8.6987 1.3211 0.0307 34 1 4.1257 -2.1427 -0.0001 35 1 0.5960 -2.4516 -0.3689 36 1 0.5763 -4.7690 -0.0610 37 1 3.0267 -6.0933 0.4048 38 1 2.2330 -5.8151 1.9735 39 1 0.1982 -6.9673 1.1473 40 1 0.9925 -7.2451 -0.4211 41 1 1.2642 -11.5342 1.4878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273303308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:45 Heat of formation + Delta-G solvation = 22.292622 kcal Electronic energy + Delta-G solvation = -24766.570984 eV Core-core repulsion = 21034.389080 eV Total energy + Delta-G solvation = -3732.181904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.38716 -40.75345 -38.86994 -35.41417 -34.98455 -34.76413 -33.22227 -32.83277 -30.61687 -30.17820 -29.27072 -27.05426 -25.04300 -23.46082 -22.95285 -22.27757 -21.05436 -20.81902 -20.56353 -18.56932 -18.08056 -17.00238 -16.73707 -16.72557 -15.91195 -15.75323 -15.22612 -14.99257 -14.48174 -14.39929 -14.18441 -14.06540 -13.80552 -13.60422 -13.35976 -13.25230 -12.67811 -12.62053 -12.48672 -11.79247 -11.68033 -11.52112 -11.48600 -11.27148 -10.72179 -10.63474 -10.39625 -10.25872 -9.97966 -9.75710 -9.66685 -9.33946 -8.72043 -8.60938 -8.42366 -8.02360 -6.11571 -4.11879 0.46902 1.23393 1.64027 2.43178 2.62328 2.74514 3.24334 3.26108 3.31599 3.32915 3.72981 3.83117 4.32345 4.36702 4.54977 4.66124 4.77189 4.84409 4.93007 5.11234 5.21183 5.22533 5.29428 5.37113 5.48472 5.63877 5.70496 5.81302 5.96257 6.02787 6.11580 6.20412 6.22438 6.29635 6.38054 6.54669 6.69553 6.87400 6.92784 7.18496 7.21822 7.59349 7.65357 8.07515 8.43585 8.68228 8.93232 9.48173 11.01478 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002756 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.429479 B =10158.614473 C =11813.564098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.106 4.106 3 C -0.100 4.100 4 C -0.113 4.113 5 C -0.008 4.008 6 C 0.238 3.762 7 N -0.464 5.464 8 C -0.036 4.036 9 C -0.082 4.082 10 O -0.200 6.200 11 C -0.080 4.080 12 C 0.177 3.823 13 N -0.686 5.686 14 C 0.694 3.306 15 O -0.566 6.566 16 N -0.734 5.734 17 C 0.146 3.854 18 C -0.021 4.021 19 C -0.523 4.523 20 H 0.077 0.923 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.883 3.117 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.186 0.814 33 H 0.217 0.783 34 H 0.168 0.832 35 H 0.407 0.593 36 H 0.394 0.606 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.018 0.982 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 28.195 -6.217 28.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.110 4.110 3 C -0.119 4.119 4 C -0.133 4.133 5 C -0.010 4.010 6 C 0.035 3.965 7 N -0.192 5.192 8 C -0.176 4.176 9 C -0.152 4.152 10 O -0.086 6.086 11 C -0.102 4.102 12 C 0.080 3.920 13 N -0.333 5.333 14 C 0.395 3.605 15 O -0.443 6.443 16 N -0.387 5.387 17 C 0.024 3.976 18 C -0.059 4.059 19 C -0.561 4.561 20 H 0.095 0.905 21 C -0.133 4.133 22 N -0.536 5.536 23 Si 0.710 3.290 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.203 0.797 33 H 0.233 0.767 34 H 0.185 0.815 35 H 0.243 0.757 36 H 0.227 0.773 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.046 27.301 -5.671 27.959 hybrid contribution -1.131 0.378 -0.736 1.401 sum 0.915 27.679 -6.408 28.425 Atomic orbital electron populations 1.20771 0.90660 1.03367 1.02517 1.19767 0.96337 0.91570 1.03284 1.20642 0.93278 0.97049 1.00899 1.21078 0.94321 0.96770 1.01142 1.17057 0.83788 0.94317 1.05818 1.23870 0.93210 0.78583 1.00847 1.70777 1.01838 1.29396 1.17197 1.23466 0.95358 0.93750 1.05063 1.25114 0.84717 0.96934 1.08459 1.84485 1.17055 1.37223 1.69859 1.21525 0.92456 0.99088 0.97094 1.17142 0.90643 0.84321 0.99858 1.42743 1.18968 1.06605 1.65028 1.16075 0.84494 0.80393 0.79556 1.90932 1.20383 1.84934 1.48020 1.45578 1.23458 1.06665 1.62997 1.21477 0.96911 0.80787 0.98438 1.19801 0.95692 0.93448 0.96975 1.20906 1.06599 0.89931 1.38686 0.90525 1.24999 0.97706 0.95570 0.95004 1.69904 1.38783 0.98967 1.45950 0.86746 0.84473 0.77922 0.79875 1.20233 1.21285 1.19120 0.90823 0.91472 0.90816 0.84981 0.85325 0.79655 0.76652 0.81455 0.75717 0.77338 0.91753 0.91801 0.95991 0.96393 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.43 36.01 0.34 -0.43 16 2 C -0.11 -1.03 5.90 -104.35 -0.62 -1.64 16 3 C -0.10 -0.88 9.67 -39.67 -0.38 -1.27 16 4 C -0.11 -1.16 9.71 -39.16 -0.38 -1.54 16 5 C -0.01 -0.11 5.87 -105.00 -0.62 -0.72 16 6 C 0.24 3.37 7.90 -13.89 -0.11 3.26 16 7 N -0.46 -7.16 10.91 -11.73 -0.13 -7.28 16 8 C -0.04 -0.41 11.87 -17.84 -0.21 -0.62 16 9 C -0.08 -0.75 12.17 29.42 0.36 -0.39 16 10 O -0.20 -2.35 10.52 4.07 0.04 -2.31 16 11 C -0.08 -1.21 8.35 -38.99 -0.33 -1.53 16 12 C 0.18 2.26 6.41 -83.74 -0.54 1.72 16 13 N -0.69 -8.41 4.97 -14.26 -0.07 -8.48 16 14 C 0.69 11.42 8.37 -86.91 -0.73 10.70 16 15 O -0.57 -11.64 13.50 5.29 0.07 -11.57 16 16 N -0.73 -11.71 5.56 -65.23 -0.36 -12.08 16 17 C 0.15 2.95 5.61 -4.04 -0.02 2.92 16 18 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 19 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 20 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 23 Si 0.88 20.84 27.47 -169.99 -4.67 16.18 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 6.99 -51.93 -0.36 0.08 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.02 16 30 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.13 1.08 7.90 -52.49 -0.41 0.67 16 32 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.22 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.17 3.07 5.56 -52.49 -0.29 2.78 16 35 H 0.41 3.50 7.42 -40.82 -0.30 3.20 16 36 H 0.39 5.01 8.49 -40.82 -0.35 4.66 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 40 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -35.67 352.30 -7.84 -43.51 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.03 Total: 6.39 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.78 Total: -3.16 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.21 Total: -54.35 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.11 Total: -13.88 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.67 -7.84 -43.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.803 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds