Wall clock time and date at job start Tue Mar 31 2020 11:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 119.88526 * 2 1 4 4 C 1.37980 * 120.21762 * 179.72046 * 3 2 1 5 5 C 1.39625 * 119.99321 * 0.27810 * 4 3 2 6 6 C 1.47837 * 120.10949 * 180.02562 * 5 4 3 7 7 N 1.31211 * 125.72686 * 179.69408 * 6 5 4 8 8 C 1.34160 * 108.64912 * 179.89392 * 7 6 5 9 9 C 1.34538 * 107.83569 * 0.36862 * 8 7 6 10 10 O 1.34425 * 125.72496 * 359.97438 * 6 5 4 11 11 C 1.39447 * 119.77845 * 0.02562 * 5 4 3 12 12 C 1.38626 * 119.78292 * 359.97438 * 11 5 4 13 13 N 1.39964 * 119.99753 * 180.02562 * 12 11 5 14 14 C 1.34781 * 120.00058 * 24.83858 * 13 12 11 15 15 O 1.21581 * 120.00159 * 5.62082 * 14 13 12 16 16 N 1.34778 * 119.99803 * 185.61620 * 14 13 12 17 17 C 1.46502 * 119.99905 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47007 * 180.02562 * 17 16 14 19 19 C 1.50706 * 109.46806 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99814 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99738 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00142 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46839 * 90.00079 * 23 21 19 25 25 H 1.48488 * 109.47372 * 210.00370 * 23 21 19 26 26 H 1.48505 * 109.46836 * 330.00611 * 23 21 19 27 27 H 1.09006 * 109.46733 * 89.99899 * 1 2 3 28 28 H 1.09003 * 109.47073 * 209.99801 * 1 2 3 29 29 H 1.08998 * 109.47018 * 330.00005 * 1 2 3 30 30 H 1.07996 * 119.89102 * 359.97438 * 3 2 1 31 31 H 1.07990 * 120.00449 * 180.25423 * 4 3 2 32 32 H 1.07998 * 126.08039 * 180.10463 * 8 7 6 33 33 H 1.08007 * 126.36272 * 179.77748 * 9 8 7 34 34 H 1.08000 * 120.10561 * 180.02562 * 11 5 4 35 35 H 0.97005 * 120.00019 * 204.83172 * 13 12 11 36 36 H 0.97003 * 120.00023 * 0.02562 * 16 14 13 37 37 H 1.08997 * 109.46774 * 300.00197 * 17 16 14 38 38 H 1.08999 * 109.46931 * 60.00089 * 17 16 14 39 39 H 1.08997 * 109.47350 * 299.99642 * 18 17 16 40 40 H 1.08999 * 109.47367 * 60.00155 * 18 17 16 41 41 H 0.97008 * 119.99915 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1988 0.0000 4 6 3.5757 1.2068 0.0058 5 6 4.2807 0.0016 0.0059 6 6 5.7591 0.0072 0.0127 7 7 6.5292 -1.0551 0.0191 8 6 7.8102 -0.6563 0.0215 9 6 7.8229 0.6890 0.0247 10 8 6.5398 1.1014 0.0186 11 6 3.5857 -1.2073 -0.0005 12 6 2.1995 -1.2046 -0.0063 13 7 1.4973 -2.4154 -0.0122 14 6 2.0735 -3.5309 0.4778 15 8 3.1612 -3.4667 1.0174 16 7 1.4439 -4.7177 0.3698 17 6 2.0705 -5.9304 0.9019 18 6 1.1546 -7.1299 0.6506 19 6 1.7989 -8.3773 1.1985 20 1 2.7651 -8.3202 1.6777 21 6 1.1552 -9.5915 1.0872 22 7 1.7172 -10.6799 1.5658 23 14 -0.5156 -9.6904 0.2578 24 1 -0.3330 -9.9350 -1.1955 25 1 -1.2984 -10.8033 0.8525 26 1 -1.2435 -8.4114 0.4569 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1319 -0.0004 31 1 4.1103 2.1451 0.0099 32 1 8.6769 -1.3006 0.0251 33 1 8.6987 1.3211 0.0307 34 1 4.1257 -2.1427 -0.0001 35 1 0.5960 -2.4516 -0.3689 36 1 0.5763 -4.7690 -0.0610 37 1 3.0267 -6.0933 0.4048 38 1 2.2330 -5.8151 1.9735 39 1 0.1982 -6.9673 1.1473 40 1 0.9925 -7.2451 -0.4211 41 1 1.2642 -11.5342 1.4878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273303308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:44 Heat of formation + Delta-G solvation = -5.637616 kcal Electronic energy + Delta-G solvation = -24767.782130 eV Core-core repulsion = 21034.389080 eV Total energy + Delta-G solvation = -3733.393050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.27829 -41.87182 -39.93642 -36.85236 -36.11864 -35.81044 -34.83006 -34.05420 -32.23873 -30.95754 -30.47503 -27.81658 -26.80763 -24.52559 -23.77138 -23.28706 -22.62470 -22.03879 -21.67437 -19.67820 -19.18819 -18.92336 -17.78297 -17.65530 -17.05087 -16.65484 -16.45155 -16.17959 -16.07922 -15.53161 -15.42759 -15.25166 -14.96138 -14.67237 -14.56634 -14.37890 -14.08288 -13.35466 -13.27801 -13.23901 -13.06199 -12.60789 -12.45032 -12.44035 -12.18949 -12.16798 -11.77888 -11.72869 -11.61128 -11.50783 -11.10758 -10.78716 -10.47414 -10.15489 -9.36633 -8.93081 -8.29663 -6.37404 -0.39911 0.32847 0.81368 1.39651 1.42777 1.46064 1.53976 1.67217 1.71333 2.02976 2.37523 2.80608 3.02615 3.05450 3.17251 3.83035 3.91155 4.00479 4.09847 4.19357 4.27524 4.36080 4.42604 4.44645 4.61758 4.74142 4.79017 4.83006 4.89126 4.94098 5.08773 5.16556 5.23077 5.26760 5.35981 5.40084 5.40724 5.45984 5.49986 5.64187 5.91774 5.96513 6.22833 6.69923 6.70465 6.96302 7.26942 7.42792 8.87364 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002756 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.429479 B =10158.614473 C =11813.564098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C -0.090 4.090 4 C -0.104 4.104 5 C -0.029 4.029 6 C 0.215 3.785 7 N -0.515 5.515 8 C -0.071 4.071 9 C -0.053 4.053 10 O -0.200 6.200 11 C -0.111 4.111 12 C 0.153 3.847 13 N -0.665 5.665 14 C 0.693 3.307 15 O -0.613 6.613 16 N -0.721 5.721 17 C 0.164 3.836 18 C -0.010 4.010 19 C -0.540 4.540 20 H 0.027 0.973 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.962 3.038 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.233 1.233 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.176 0.824 31 H 0.151 0.849 32 H 0.206 0.794 33 H 0.270 0.730 34 H 0.123 0.877 35 H 0.427 0.573 36 H 0.414 0.586 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 32.034 -7.716 32.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.031 4.031 6 C 0.012 3.988 7 N -0.244 5.244 8 C -0.210 4.210 9 C -0.123 4.123 10 O -0.086 6.086 11 C -0.133 4.133 12 C 0.058 3.942 13 N -0.314 5.314 14 C 0.394 3.606 15 O -0.493 6.493 16 N -0.376 5.376 17 C 0.039 3.961 18 C -0.048 4.048 19 C -0.579 4.579 20 H 0.045 0.955 21 C -0.194 4.194 22 N -0.592 5.592 23 Si 0.784 3.216 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.156 1.156 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.193 0.807 31 H 0.169 0.831 32 H 0.223 0.777 33 H 0.286 0.714 34 H 0.141 0.859 35 H 0.266 0.734 36 H 0.251 0.749 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.085 31.210 -7.204 32.049 hybrid contribution 0.021 -0.715 -0.229 0.751 sum -1.064 30.495 -7.434 31.406 Atomic orbital electron populations 1.20903 0.87770 1.04470 1.04186 1.20175 0.98256 0.90340 1.00692 1.21165 0.92678 0.98356 0.98602 1.21400 0.95248 0.96221 0.99540 1.17248 0.83800 0.94991 1.07062 1.24039 0.93788 0.78921 1.02035 1.70726 1.04000 1.31203 1.18503 1.23959 0.94730 0.95524 1.06795 1.26097 0.84886 0.96751 1.04518 1.84486 1.17927 1.36527 1.69665 1.21253 0.93763 0.98181 1.00140 1.17337 0.90015 0.85334 1.01552 1.42375 1.19513 1.05338 1.64141 1.16197 0.83885 0.81237 0.79305 1.90930 1.22612 1.85727 1.50032 1.45106 1.24117 1.05338 1.63084 1.20936 0.95934 0.82055 0.97155 1.19642 0.96002 0.91447 0.97729 1.21252 1.05264 0.92775 1.38602 0.95501 1.26117 1.02908 0.94732 0.95683 1.70085 1.41272 0.99904 1.47942 0.85502 0.78183 0.79295 0.78652 1.19050 1.21329 1.15597 0.88671 0.91492 0.88660 0.80670 0.83132 0.77735 0.71441 0.85873 0.73350 0.74938 0.94097 0.93836 0.94098 0.94441 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.43 71.24 0.67 -0.34 16 2 C -0.09 -1.51 5.90 -19.69 -0.12 -1.62 16 3 C -0.09 -1.25 9.67 22.21 0.21 -1.04 16 4 C -0.10 -1.95 9.71 22.54 0.22 -1.73 16 5 C -0.03 -0.81 5.87 -20.11 -0.12 -0.93 16 6 C 0.22 6.39 7.90 87.33 0.69 7.07 16 7 N -0.51 -17.20 10.91 -305.08 -3.33 -20.53 16 8 C -0.07 -1.67 11.87 83.49 0.99 -0.67 16 9 C -0.05 -0.89 12.17 66.97 0.82 -0.08 16 10 O -0.20 -4.60 10.52 -8.34 -0.09 -4.68 16 11 C -0.11 -3.59 8.35 22.65 0.19 -3.40 16 12 C 0.15 3.87 6.41 38.10 0.24 4.12 16 13 N -0.66 -15.89 4.97 -317.29 -1.58 -17.47 16 14 C 0.69 23.45 8.37 179.05 1.50 24.95 16 15 O -0.61 -27.19 13.50 -3.97 -0.05 -27.24 16 16 N -0.72 -22.85 5.56 -478.54 -2.66 -25.51 16 17 C 0.16 6.82 5.61 86.38 0.48 7.31 16 18 C -0.01 -0.46 4.16 29.85 0.12 -0.34 16 19 C -0.54 -31.15 9.66 25.60 0.25 -30.91 16 20 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 21 C 0.00 0.15 5.47 84.66 0.46 0.61 16 22 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 23 Si 0.96 42.13 27.47 68.60 1.88 44.02 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 27 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.07 0.62 6.99 -2.39 -0.02 0.60 16 29 H 0.09 0.49 8.08 -2.39 -0.02 0.47 16 30 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.15 2.10 7.90 -2.92 -0.02 2.08 16 32 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.27 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.12 5.08 5.56 -2.91 -0.02 5.07 16 35 H 0.43 6.37 7.42 -92.70 -0.69 5.68 16 36 H 0.41 9.61 8.49 -92.71 -0.79 8.82 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 40 H 0.04 1.53 7.57 -2.39 -0.02 1.52 16 41 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -86.79 352.30 0.65 -86.14 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.44 Total: 21.89 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.62 Total: 3.00 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -7.27 Total: -123.12 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.14 Total: -31.92 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.02 kcal Total: -86.79 0.65 -86.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.498 kcal (2) G-P(sol) polarization free energy of solvation -86.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds