Wall clock time and date at job start Tue Mar 31 2020 10:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38108 * 119.92520 * 179.67974 * 11 10 9 13 13 C 1.38301 * 120.07040 * 0.61780 * 12 11 10 14 14 C 1.50699 * 119.93014 * 179.70400 * 13 12 11 15 15 N 1.46505 * 109.46837 * 269.97473 * 14 13 12 16 16 C 1.34769 * 119.99695 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00447 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99900 * 180.02562 * 16 15 14 19 19 C 1.53008 * 109.47199 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.46709 * 180.02562 * 19 18 16 21 21 C 1.34672 * 125.98781 * 124.72055 * 20 19 18 22 22 N 1.36879 * 106.81481 * 179.84235 * 21 20 19 23 23 H 0.97004 * 126.39603 * 180.18570 * 22 21 20 24 24 C 1.35044 * 107.20648 * 0.40652 * 22 21 20 25 25 N 1.30500 * 108.69699 * 359.74585 * 24 22 21 26 26 C 1.38305 * 120.13577 * 359.68120 * 13 12 11 27 27 C 1.38101 * 120.07071 * 359.97438 * 26 13 12 28 28 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.96536 * 180.32007 * 12 11 10 31 31 H 1.08986 * 109.47504 * 29.97767 * 14 13 12 32 32 H 1.09005 * 109.46821 * 149.98075 * 14 13 12 33 33 H 0.96998 * 119.99976 * 0.02562 * 15 14 13 34 34 H 1.09003 * 109.47040 * 300.00129 * 18 16 15 35 35 H 1.08996 * 109.47266 * 60.00329 * 18 16 15 36 36 H 1.08997 * 109.46674 * 300.00056 * 19 18 16 37 37 H 1.08996 * 109.46932 * 59.99892 * 19 18 16 38 38 H 1.08003 * 126.58911 * 359.95432 * 21 20 19 39 39 H 1.08000 * 125.64957 * 179.75959 * 24 22 21 40 40 H 1.07999 * 119.96326 * 180.02562 * 26 13 12 41 41 H 1.07997 * 120.03156 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3406 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2546 -6.6939 -0.8897 16 6 6.8769 -7.8811 -1.0298 17 8 7.1539 -8.5400 -0.0500 18 6 7.2285 -8.3900 -2.4041 19 6 7.9218 -9.7486 -2.2829 20 6 8.2739 -10.2571 -3.6571 21 6 9.5004 -10.6245 -4.0747 22 7 9.3722 -11.0227 -5.3780 23 1 10.0828 -11.3464 -5.9535 24 6 8.0726 -10.8761 -5.7145 25 7 7.4218 -10.4178 -4.6803 26 6 3.8530 -4.7987 0.2042 27 6 3.2232 -3.5745 0.0955 28 1 -0.4849 0.8401 0.0004 29 1 5.9419 -1.5655 0.2316 30 1 7.0533 -3.7517 0.4369 31 1 6.8228 -6.0905 1.0369 32 1 5.2443 -6.9068 0.9360 33 1 6.0326 -6.1672 -1.6734 34 1 6.3191 -8.4980 -2.9952 35 1 7.8980 -7.6825 -2.8932 36 1 8.8311 -9.6410 -1.6916 37 1 7.2520 -10.4559 -1.7939 38 1 10.4100 -10.6097 -3.4925 39 1 7.6430 -11.1010 -6.6795 40 1 3.2703 -5.7079 0.1942 41 1 2.1485 -3.5262 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280394823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:12 Heat of formation + Delta-G solvation = 10.192269 kcal Electronic energy + Delta-G solvation = -23826.946983 eV Core-core repulsion = 20094.240368 eV Total energy + Delta-G solvation = -3732.706615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.33488 -39.74291 -39.13043 -37.03012 -34.53818 -34.19744 -32.46260 -32.13679 -30.43731 -30.25592 -29.12247 -26.25817 -25.01137 -23.72032 -22.30132 -22.16117 -20.58547 -20.42272 -20.02670 -18.54405 -17.97228 -17.44852 -16.93636 -15.89270 -15.82669 -15.22864 -14.99389 -14.75231 -14.43074 -14.26598 -14.12660 -13.89291 -13.79344 -13.45276 -13.32983 -12.78098 -12.68034 -12.59860 -12.25534 -12.12667 -11.93252 -11.46031 -11.30068 -10.93445 -10.84806 -10.74206 -10.30612 -10.22838 -10.20549 -9.79392 -9.46425 -8.93501 -8.92996 -8.73213 -8.35725 -7.45514 -6.48147 -4.15093 1.70842 1.98659 2.04761 2.73953 2.77796 2.81030 3.18382 3.21440 3.35726 3.46822 4.18111 4.23539 4.42899 4.68880 4.74976 4.76372 4.93523 5.01530 5.04533 5.11371 5.23063 5.38198 5.40908 5.55477 5.58782 5.67124 5.75629 5.91937 5.94146 5.98522 6.05373 6.27161 6.39552 6.47485 6.56348 6.70107 6.92375 7.00084 7.14932 7.21299 7.51854 7.64163 7.72947 7.75295 7.96181 8.32037 8.86399 9.47219 10.59040 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.001936 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.298300 B =14459.528206 C =14902.264894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.214 6.214 10 C 0.166 3.834 11 C -0.195 4.195 12 C -0.057 4.057 13 C -0.205 4.205 14 C 0.177 3.823 15 N -0.724 5.724 16 C 0.510 3.490 17 O -0.551 6.551 18 C -0.132 4.132 19 C -0.017 4.017 20 C 0.005 3.995 21 C -0.055 4.055 22 N -0.573 5.573 23 H 0.419 0.581 24 C 0.183 3.817 25 N -0.488 5.488 26 C -0.053 4.053 27 C -0.224 4.224 28 H 0.280 0.720 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.176 0.824 39 H 0.207 0.793 40 H 0.111 0.889 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.746 -18.638 -9.825 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.113 3.887 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.206 4.206 14 C 0.054 3.946 15 N -0.375 5.375 16 C 0.296 3.704 17 O -0.429 6.429 18 C -0.172 4.172 19 C -0.056 4.056 20 C -0.124 4.124 21 C -0.189 4.189 22 N -0.176 5.176 23 H 0.257 0.743 24 C -0.101 4.101 25 N -0.208 5.208 26 C -0.071 4.071 27 C -0.243 4.243 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.193 0.807 39 H 0.224 0.776 40 H 0.129 0.871 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.931 -18.538 -9.055 27.335 hybrid contribution 1.121 0.650 -0.853 1.552 sum 19.052 -17.888 -9.909 27.949 Atomic orbital electron populations 1.69646 1.05589 1.28633 1.47405 1.24493 0.95054 0.98919 0.95524 0.86166 0.80328 0.81339 0.79000 1.19828 1.20733 1.18323 1.20790 0.76773 0.96722 1.52366 0.87493 1.83570 1.22758 1.25843 1.79617 1.19182 0.91738 0.85508 0.92268 1.20209 0.91956 0.97908 1.11371 1.20537 0.98399 0.91236 0.97405 1.19303 0.93776 0.93529 1.14005 1.19981 0.98781 0.92237 0.83556 1.46346 1.60157 1.20951 1.10070 1.20761 0.77208 0.80875 0.91528 1.90679 1.54224 1.57095 1.40943 1.21567 1.03170 0.97884 0.94567 1.19567 1.01407 0.95057 0.89544 1.20783 0.89658 1.05463 0.96456 1.22591 1.01025 1.09208 0.86080 1.43369 1.11136 1.50968 1.12124 0.74316 1.25065 0.80629 1.03821 1.00599 1.70174 1.33320 1.17904 0.99360 1.20714 0.93397 0.96867 0.96161 1.21285 1.01257 0.91767 1.09979 0.90932 0.86395 0.86790 0.91545 0.91497 0.76342 0.88193 0.89248 0.90075 0.89985 0.80654 0.77628 0.87057 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.96 55.48 0.77 -24.07 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.23 28.62 -169.99 -4.86 16.37 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -10.76 9.95 30.89 0.31 -10.46 16 8 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 9 O -0.21 -5.48 8.59 0.05 0.00 -5.47 16 10 C 0.17 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.20 -3.67 9.99 -39.39 -0.39 -4.06 16 12 C -0.06 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.20 -3.18 5.25 -104.57 -0.55 -3.73 16 14 C 0.18 2.43 5.80 -5.19 -0.03 2.40 16 15 N -0.72 -8.85 5.55 -61.47 -0.34 -9.19 16 16 C 0.51 6.47 7.83 -10.99 -0.09 6.39 16 17 O -0.55 -8.85 15.98 5.56 0.09 -8.76 16 18 C -0.13 -1.31 5.67 -27.88 -0.16 -1.47 16 19 C -0.02 -0.17 5.07 -27.88 -0.14 -0.31 16 20 C 0.01 0.05 6.36 -82.86 -0.53 -0.48 16 21 C -0.06 -0.39 11.92 -16.56 -0.20 -0.58 16 22 N -0.57 -2.85 6.15 -14.03 -0.09 -2.93 16 23 H 0.42 0.54 8.96 -40.82 -0.37 0.18 16 24 C 0.18 1.24 13.04 -90.37 -1.18 0.06 16 25 N -0.49 -5.13 11.23 -10.87 -0.12 -5.25 16 26 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 27 C -0.22 -4.62 9.17 -39.40 -0.36 -4.98 16 28 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.07 0.91 8.08 -51.94 -0.42 0.49 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.40 4.36 8.46 -40.82 -0.35 4.02 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 37 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.18 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.21 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -33.59 358.68 -8.65 -42.24 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.07 Total: 6.37 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -4.44 Total: -14.71 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.23 Total: -41.44 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.86 Total: 16.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.59 -8.65 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280394823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.433 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds