Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48490 * 109.47446 * 274.84513 * 3 2 1 5 5 H 1.48503 * 109.47251 * 34.85160 * 3 2 1 6 6 H 1.48506 * 109.46998 * 154.84428 * 3 2 1 7 7 C 1.39104 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 356.42581 * 7 2 1 9 9 N 1.36798 * 119.99734 * 176.41710 * 7 2 1 10 10 C 1.34776 * 119.99494 * 124.66296 * 9 7 2 11 11 O 1.21566 * 119.99612 * 186.58588 * 10 9 7 12 12 C 1.48003 * 120.00412 * 6.58023 * 10 9 7 13 13 C 1.40066 * 120.89358 * 337.33125 * 12 10 9 14 14 C 1.37963 * 119.14630 * 179.97438 * 13 12 10 15 15 N 1.31900 * 120.99802 * 359.97438 * 14 13 12 16 16 C 1.32302 * 121.97841 * 359.73114 * 15 14 13 17 17 N 1.39427 * 119.63112 * 180.26740 * 16 15 14 18 18 C 1.34783 * 119.99921 * 5.88591 * 17 16 15 19 19 O 1.21275 * 119.99877 * 5.22050 * 18 17 16 20 20 C 1.50700 * 119.99716 * 185.22015 * 18 17 16 21 21 C 1.53001 * 117.49982 * 248.61978 * 20 18 17 22 22 C 1.52993 * 60.00245 * 252.51369 * 21 20 18 23 23 C 1.38969 * 120.73757 * 0.53186 * 16 15 14 24 24 C 1.46501 * 120.00387 * 304.66457 * 9 7 2 25 25 C 1.53000 * 117.49680 * 358.83011 * 24 9 7 26 26 C 1.52997 * 59.99997 * 252.51208 * 25 24 9 27 27 H 0.97006 * 119.99709 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.42937 * 359.97438 * 13 12 10 29 29 H 1.08003 * 119.50047 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00479 * 185.88510 * 17 16 15 31 31 H 1.08995 * 115.55500 * 34.33099 * 20 18 17 32 32 H 1.09008 * 117.49779 * 359.97438 * 21 20 18 33 33 H 1.08998 * 117.50464 * 145.02037 * 21 20 18 34 34 H 1.08998 * 117.50225 * 252.51048 * 22 21 20 35 35 H 1.08999 * 117.52053 * 107.47726 * 22 21 20 36 36 H 1.07991 * 120.53575 * 179.75509 * 23 16 15 37 37 H 1.08997 * 115.55018 * 144.54213 * 24 9 7 38 38 H 1.09003 * 117.50009 * 359.97438 * 25 24 9 39 39 H 1.09000 * 117.49768 * 145.02582 * 25 24 9 40 40 H 1.08994 * 117.50099 * 252.51143 * 26 25 24 41 41 H 1.09005 * 117.51792 * 107.48254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3924 2.1055 -1.3949 5 1 1.4998 2.6209 0.8001 6 1 3.5923 1.4127 0.5952 7 6 2.0087 -1.2047 0.0005 8 1 1.4702 -2.1391 0.0593 9 7 3.3747 -1.2060 -0.0735 10 6 4.1000 -1.8397 0.8693 11 8 5.3117 -1.7412 0.8721 12 6 3.4214 -2.6553 1.9011 13 6 2.0779 -2.4302 2.2271 14 6 1.4810 -3.2122 3.1942 15 7 2.1558 -4.1632 3.8108 16 6 3.4242 -4.4157 3.5320 17 7 4.0890 -5.4366 4.2101 18 6 3.4105 -6.2367 5.0564 19 8 2.2066 -6.1308 5.1570 20 6 4.1480 -7.2627 5.8775 21 6 3.9146 -8.7370 5.5415 22 6 3.3215 -8.1406 6.8194 23 6 4.1029 -3.6712 2.5748 24 6 4.0491 -0.5184 -1.1775 25 6 3.1697 0.1589 -2.2304 26 6 3.9200 -1.1294 -2.5742 27 1 -0.4850 0.8401 -0.0004 28 1 1.5165 -1.6543 1.7278 29 1 0.4452 -3.0438 3.4498 30 1 5.0398 -5.5711 4.0728 31 1 5.1462 -6.9731 6.2059 32 1 3.2272 -8.9648 4.7267 33 1 4.7593 -9.4176 5.6486 34 1 3.7759 -8.4286 7.7674 35 1 2.2444 -7.9756 6.8455 36 1 5.1394 -3.8775 2.3526 37 1 4.9934 -0.0365 -0.9243 38 1 2.0893 0.0926 -2.1020 39 1 3.5352 1.0868 -2.6701 40 1 4.7792 -1.0489 -3.2401 41 1 3.3336 -2.0430 -2.6717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285051187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = 64.432943 kcal Electronic energy + Delta-G solvation = -25850.277733 eV Core-core repulsion = 22119.923170 eV Total energy + Delta-G solvation = -3730.354563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59430 -39.61841 -38.53213 -36.55455 -36.21693 -34.69435 -33.68334 -32.05490 -31.46198 -29.64580 -25.64054 -25.02460 -24.30989 -22.67091 -22.38931 -22.06234 -21.40394 -20.00122 -19.31376 -18.12971 -17.70354 -17.05550 -16.17501 -15.50348 -15.40920 -15.10544 -14.90072 -14.67993 -14.51669 -14.31798 -14.05804 -13.68462 -13.39072 -13.09490 -12.80592 -12.69874 -12.59760 -11.78817 -11.78348 -11.42085 -11.34845 -10.94977 -10.85075 -10.80932 -10.75553 -10.43089 -10.14616 -10.01237 -9.85189 -9.55104 -9.32113 -9.15813 -9.05845 -8.53112 -7.82806 -7.62880 -6.61009 -4.46309 1.47515 1.61203 2.62200 2.91362 3.04417 3.18386 3.27326 3.61170 3.71919 3.99284 4.07218 4.38911 4.43279 4.52470 4.56026 4.66238 4.82614 4.88661 5.15477 5.33519 5.35301 5.49122 5.52470 5.56099 5.61945 5.64624 5.71619 5.73730 5.90865 5.96135 6.17729 6.20962 6.28813 6.47367 6.66572 6.69383 6.83007 7.01850 7.24142 7.31923 7.47387 7.88306 8.03337 8.20574 8.61408 8.72074 9.05603 9.43118 10.41421 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.003374 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.790479 B = 8295.762620 C = 8929.539085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.259 1.259 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.358 4.358 8 H 0.110 0.890 9 N -0.433 5.433 10 C 0.538 3.462 11 O -0.583 6.583 12 C -0.041 4.041 13 C -0.153 4.153 14 C 0.104 3.896 15 N -0.473 5.473 16 C 0.327 3.673 17 N -0.658 5.658 18 C 0.531 3.469 19 O -0.476 6.476 20 C -0.194 4.194 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.160 4.160 24 C 0.067 3.933 25 C -0.193 4.193 26 C -0.185 4.185 27 H 0.280 0.720 28 H 0.204 0.796 29 H 0.158 0.842 30 H 0.415 0.585 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -9.183 5.894 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.136 4.136 3 Si 0.710 3.290 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.127 0.873 9 N -0.153 5.153 10 C 0.328 3.672 11 O -0.466 6.466 12 C -0.052 4.052 13 C -0.173 4.173 14 C -0.053 4.053 15 N -0.188 5.188 16 C 0.097 3.903 17 N -0.304 5.304 18 C 0.317 3.683 19 O -0.345 6.345 20 C -0.215 4.215 21 C -0.191 4.191 22 C -0.184 4.184 23 C -0.184 4.184 24 C -0.037 4.037 25 C -0.230 4.230 26 C -0.223 4.223 27 H 0.091 0.909 28 H 0.220 0.780 29 H 0.175 0.825 30 H 0.251 0.749 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.083 -9.484 6.640 13.078 hybrid contribution 1.270 1.331 -0.846 2.025 sum 7.353 -8.153 5.794 12.414 Atomic orbital electron populations 1.69633 1.06112 1.28851 1.44468 1.25618 0.95314 0.99109 0.93585 0.86824 0.80787 0.82262 0.79165 1.18368 1.21897 1.18439 1.19026 0.79033 0.95445 1.55032 0.87295 1.42921 1.06320 1.47258 1.18784 1.18199 0.86035 0.81829 0.81114 1.90634 1.14147 1.66257 1.75602 1.20019 0.94342 0.95014 0.95859 1.24300 0.95009 1.01896 0.96097 1.22739 0.99723 0.90533 0.92296 1.67317 1.06137 1.18477 1.26846 1.18100 0.89964 0.89990 0.92209 1.43369 1.12728 1.30804 1.43541 1.19795 0.87692 0.81195 0.79632 1.90802 1.13556 1.66860 1.63312 1.22208 1.01908 0.92427 1.05005 1.22960 1.03614 0.92303 1.00258 1.22958 1.00895 1.00470 0.94082 1.21425 1.01165 0.97868 0.97956 1.21769 0.97508 1.00550 0.83851 1.23583 1.01301 0.95721 1.02444 1.23228 1.02407 0.97861 0.98850 0.90933 0.78027 0.82469 0.74930 0.85756 0.88160 0.87766 0.87910 0.87273 0.84657 0.86764 0.86017 0.89171 0.89467 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.35 13.95 55.50 0.77 -20.57 16 2 C 0.07 1.75 3.86 -17.45 -0.07 1.68 16 3 Si 0.88 19.38 23.83 -169.99 -4.05 15.33 16 4 H -0.26 -5.27 5.59 56.52 0.32 -4.96 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.02 6.88 56.52 0.39 -5.64 16 7 C -0.36 -8.49 5.64 -15.01 -0.08 -8.57 16 8 H 0.11 2.75 6.70 -52.49 -0.35 2.40 16 9 N -0.43 -9.96 2.26 -108.74 -0.25 -10.21 16 10 C 0.54 12.49 7.52 -12.26 -0.09 12.40 16 11 O -0.58 -14.31 16.47 5.31 0.09 -14.22 16 12 C -0.04 -0.87 5.77 -104.68 -0.60 -1.47 16 13 C -0.15 -3.16 8.17 -39.00 -0.32 -3.48 16 14 C 0.10 2.01 11.16 -17.62 -0.20 1.82 16 15 N -0.47 -9.44 7.90 -12.42 -0.10 -9.54 16 16 C 0.33 5.88 7.41 -154.75 -1.15 4.73 16 17 N -0.66 -9.18 5.39 -11.45 -0.06 -9.24 16 18 C 0.53 7.68 7.56 -10.98 -0.08 7.60 16 19 O -0.48 -8.95 14.56 5.56 0.08 -8.87 16 20 C -0.19 -1.88 6.19 -91.77 -0.57 -2.44 16 21 C -0.15 -1.25 10.23 -26.73 -0.27 -1.53 16 22 C -0.15 -1.31 10.04 -26.73 -0.27 -1.57 16 23 C -0.16 -2.95 9.51 -38.78 -0.37 -3.32 16 24 C 0.07 1.41 4.19 -67.93 -0.28 1.13 16 25 C -0.19 -3.71 6.24 -26.73 -0.17 -3.88 16 26 C -0.18 -3.34 10.41 -26.73 -0.28 -3.62 16 27 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.20 4.55 4.22 -52.49 -0.22 4.33 16 29 H 0.16 2.70 8.06 -52.48 -0.42 2.28 16 30 H 0.41 4.10 8.70 -40.82 -0.36 3.75 16 31 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 36 H 0.14 2.24 7.89 -52.49 -0.41 1.83 16 37 H 0.11 2.39 7.83 -51.93 -0.41 1.98 16 38 H 0.12 2.60 5.20 -51.93 -0.27 2.33 16 39 H 0.09 1.55 7.57 -51.93 -0.39 1.16 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -30.47 338.87 -8.21 -38.69 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.00 Total: 14.06 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -4.80 Total: -0.54 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.37 Total: -49.56 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.05 Total: 15.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.47 -8.21 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285051187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.118 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds