Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31329 * 1 3 3 Si 1.86796 * 120.00079 * 2 1 4 4 H 1.48490 * 109.47446 * 274.84513 * 3 2 1 5 5 H 1.48503 * 109.47251 * 34.85160 * 3 2 1 6 6 H 1.48506 * 109.46998 * 154.84428 * 3 2 1 7 7 C 1.39104 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 356.42581 * 7 2 1 9 9 N 1.36798 * 119.99734 * 176.41710 * 7 2 1 10 10 C 1.34776 * 119.99494 * 124.66296 * 9 7 2 11 11 O 1.21566 * 119.99612 * 186.58588 * 10 9 7 12 12 C 1.48003 * 120.00412 * 6.58023 * 10 9 7 13 13 C 1.40066 * 120.89358 * 337.33125 * 12 10 9 14 14 C 1.37963 * 119.14630 * 179.97438 * 13 12 10 15 15 N 1.31900 * 120.99802 * 359.97438 * 14 13 12 16 16 C 1.32302 * 121.97841 * 359.73114 * 15 14 13 17 17 N 1.39427 * 119.63112 * 180.26740 * 16 15 14 18 18 C 1.34783 * 119.99921 * 5.88591 * 17 16 15 19 19 O 1.21275 * 119.99877 * 5.22050 * 18 17 16 20 20 C 1.50700 * 119.99716 * 185.22015 * 18 17 16 21 21 C 1.53001 * 117.49982 * 248.61978 * 20 18 17 22 22 C 1.52993 * 60.00245 * 252.51369 * 21 20 18 23 23 C 1.38969 * 120.73757 * 0.53186 * 16 15 14 24 24 C 1.46501 * 120.00387 * 304.66457 * 9 7 2 25 25 C 1.53000 * 117.49680 * 358.83011 * 24 9 7 26 26 C 1.52997 * 59.99997 * 252.51208 * 25 24 9 27 27 H 0.97006 * 119.99709 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.42937 * 359.97438 * 13 12 10 29 29 H 1.08003 * 119.50047 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00479 * 185.88510 * 17 16 15 31 31 H 1.08995 * 115.55500 * 34.33099 * 20 18 17 32 32 H 1.09008 * 117.49779 * 359.97438 * 21 20 18 33 33 H 1.08998 * 117.50464 * 145.02037 * 21 20 18 34 34 H 1.08998 * 117.50225 * 252.51048 * 22 21 20 35 35 H 1.08999 * 117.52053 * 107.47726 * 22 21 20 36 36 H 1.07991 * 120.53575 * 179.75509 * 23 16 15 37 37 H 1.08997 * 115.55018 * 144.54213 * 24 9 7 38 38 H 1.09003 * 117.50009 * 359.97438 * 25 24 9 39 39 H 1.09000 * 117.49768 * 145.02582 * 25 24 9 40 40 H 1.08994 * 117.50099 * 252.51143 * 26 25 24 41 41 H 1.09005 * 117.51792 * 107.48254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3924 2.1055 -1.3949 5 1 1.4998 2.6209 0.8001 6 1 3.5923 1.4127 0.5952 7 6 2.0087 -1.2047 0.0005 8 1 1.4702 -2.1391 0.0593 9 7 3.3747 -1.2060 -0.0735 10 6 4.1000 -1.8397 0.8693 11 8 5.3117 -1.7412 0.8721 12 6 3.4214 -2.6553 1.9011 13 6 2.0779 -2.4302 2.2271 14 6 1.4810 -3.2122 3.1942 15 7 2.1558 -4.1632 3.8108 16 6 3.4242 -4.4157 3.5320 17 7 4.0890 -5.4366 4.2101 18 6 3.4105 -6.2367 5.0564 19 8 2.2066 -6.1308 5.1570 20 6 4.1480 -7.2627 5.8775 21 6 3.9146 -8.7370 5.5415 22 6 3.3215 -8.1406 6.8194 23 6 4.1029 -3.6712 2.5748 24 6 4.0491 -0.5184 -1.1775 25 6 3.1697 0.1589 -2.2304 26 6 3.9200 -1.1294 -2.5742 27 1 -0.4850 0.8401 -0.0004 28 1 1.5165 -1.6543 1.7278 29 1 0.4452 -3.0438 3.4498 30 1 5.0398 -5.5711 4.0728 31 1 5.1462 -6.9731 6.2059 32 1 3.2272 -8.9648 4.7267 33 1 4.7593 -9.4176 5.6486 34 1 3.7759 -8.4286 7.7674 35 1 2.2444 -7.9756 6.8455 36 1 5.1394 -3.8775 2.3526 37 1 4.9934 -0.0365 -0.9243 38 1 2.0893 0.0926 -2.1020 39 1 3.5352 1.0868 -2.6701 40 1 4.7792 -1.0489 -3.2401 41 1 3.3336 -2.0430 -2.6717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285051187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = 45.560177 kcal Electronic energy + Delta-G solvation = -25851.096118 eV Core-core repulsion = 22119.923170 eV Total energy + Delta-G solvation = -3731.172947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00624 -41.10811 -39.97858 -38.21409 -37.15996 -36.05887 -35.35777 -33.86126 -33.07978 -31.10646 -27.38187 -26.37655 -25.75935 -23.87314 -23.57175 -23.30707 -22.84609 -21.39715 -20.85532 -19.70057 -19.01500 -18.39796 -17.76201 -17.15934 -16.68153 -16.53707 -16.34788 -16.15927 -15.89967 -15.73284 -15.48172 -15.12369 -15.01358 -14.57386 -14.43981 -14.37296 -13.59497 -13.53300 -13.11501 -13.04995 -12.52631 -12.42737 -12.34120 -12.03248 -11.81634 -11.56189 -11.50761 -11.46599 -11.28565 -11.14661 -11.10265 -10.76781 -10.72516 -10.10877 -9.44171 -9.23518 -8.47609 -6.34210 -0.13710 0.12706 1.28690 1.38666 1.48639 1.48688 1.73737 1.96904 2.22180 2.39144 2.74142 2.85978 2.98662 3.13144 3.31498 3.71694 3.79857 3.88153 3.91644 3.99022 4.00451 4.09523 4.15843 4.21440 4.25284 4.47493 4.69971 4.73306 4.76396 4.77660 4.89860 4.94902 5.05142 5.10312 5.23399 5.26385 5.30952 5.45974 5.53691 5.78474 6.03772 6.14201 6.23834 6.86601 6.92788 7.22307 7.29452 7.61123 8.57616 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024625 B = 0.003374 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.790479 B = 8295.762620 C = 8929.539085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.051 3.949 3 Si 0.921 3.079 4 H -0.228 1.228 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.347 4.347 8 H 0.086 0.914 9 N -0.440 5.440 10 C 0.530 3.470 11 O -0.601 6.601 12 C -0.061 4.061 13 C -0.162 4.162 14 C 0.105 3.895 15 N -0.492 5.492 16 C 0.332 3.668 17 N -0.644 5.644 18 C 0.525 3.475 19 O -0.526 6.526 20 C -0.196 4.196 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.152 4.152 24 C 0.036 3.964 25 C -0.189 4.189 26 C -0.161 4.161 27 H 0.283 0.717 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.435 0.565 31 H 0.161 0.839 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.157 0.843 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 -10.122 5.974 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.156 4.156 3 Si 0.747 3.253 4 H -0.151 1.151 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.475 4.475 8 H 0.103 0.897 9 N -0.159 5.159 10 C 0.320 3.680 11 O -0.487 6.487 12 C -0.072 4.072 13 C -0.183 4.183 14 C -0.051 4.051 15 N -0.207 5.207 16 C 0.100 3.900 17 N -0.293 5.293 18 C 0.314 3.686 19 O -0.399 6.399 20 C -0.217 4.217 21 C -0.176 4.176 22 C -0.188 4.188 23 C -0.176 4.176 24 C -0.068 4.068 25 C -0.226 4.226 26 C -0.199 4.199 27 H 0.094 0.906 28 H 0.199 0.801 29 H 0.190 0.810 30 H 0.275 0.725 31 H 0.178 0.822 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.174 0.826 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.376 -10.436 6.693 14.962 hybrid contribution 0.581 1.504 -0.820 1.809 sum 8.956 -8.932 5.872 13.946 Atomic orbital electron populations 1.69682 1.07073 1.29527 1.45933 1.25947 0.95547 1.00814 0.93290 0.86271 0.78628 0.79922 0.80482 1.15149 1.22588 1.20385 1.18731 0.79376 0.94673 1.54696 0.89676 1.43015 1.06021 1.47281 1.19537 1.18542 0.86010 0.81951 0.81473 1.90597 1.14703 1.67123 1.76254 1.20067 0.94690 0.96105 0.96335 1.23981 0.95051 1.02198 0.97052 1.22900 1.00381 0.90085 0.91768 1.67424 1.07262 1.18679 1.27364 1.18363 0.89457 0.90330 0.91821 1.43425 1.13702 1.29454 1.42716 1.20752 0.87438 0.81310 0.79139 1.90783 1.15995 1.68367 1.64766 1.22270 1.02895 0.91708 1.04809 1.23078 1.04077 0.91414 0.99041 1.23047 0.99602 1.00369 0.95784 1.21556 1.01890 0.96862 0.97257 1.21958 0.98006 1.02450 0.84380 1.23575 0.99892 0.97566 1.01558 1.23287 1.02894 0.96837 0.96886 0.90638 0.80062 0.81035 0.72469 0.82198 0.89830 0.84329 0.84966 0.89981 0.82561 0.86757 0.88202 0.86482 0.85887 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.18 13.95 21.69 0.30 -44.87 16 2 C 0.05 2.47 3.86 84.98 0.33 2.80 16 3 Si 0.92 39.68 23.83 68.60 1.64 41.32 16 4 H -0.23 -8.64 5.59 99.48 0.56 -8.08 16 5 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.81 6.88 99.48 0.68 -12.13 16 7 C -0.35 -16.92 5.64 84.13 0.47 -16.45 16 8 H 0.09 4.52 6.70 -2.91 -0.02 4.50 16 9 N -0.44 -20.43 2.26 -616.22 -1.39 -21.82 16 10 C 0.53 24.89 7.52 86.83 0.65 25.55 16 11 O -0.60 -29.51 16.47 -3.92 -0.06 -29.58 16 12 C -0.06 -2.62 5.77 -19.90 -0.11 -2.73 16 13 C -0.16 -6.97 8.17 22.65 0.18 -6.79 16 14 C 0.11 4.19 11.16 84.62 0.94 5.14 16 15 N -0.49 -19.86 7.90 -193.22 -1.53 -21.38 16 16 C 0.33 11.74 7.41 132.91 0.98 12.73 16 17 N -0.64 -16.95 5.39 -308.51 -1.66 -18.61 16 18 C 0.53 14.56 7.56 87.66 0.66 15.23 16 19 O -0.53 -19.95 14.56 -3.01 -0.04 -19.99 16 20 C -0.20 -3.23 6.19 -11.54 -0.07 -3.30 16 21 C -0.14 -1.85 10.23 30.59 0.31 -1.54 16 22 C -0.15 -2.35 10.04 30.59 0.31 -2.04 16 23 C -0.15 -5.52 9.51 22.79 0.22 -5.31 16 24 C 0.04 1.46 4.19 44.99 0.19 1.65 16 25 C -0.19 -6.89 6.24 30.59 0.19 -6.69 16 26 C -0.16 -5.47 10.41 30.59 0.32 -5.15 16 27 H 0.28 13.58 8.31 -92.70 -0.77 12.81 16 28 H 0.18 8.62 4.22 -2.91 -0.01 8.61 16 29 H 0.17 6.12 8.06 -2.91 -0.02 6.09 16 30 H 0.44 7.45 8.70 -92.71 -0.81 6.64 16 31 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.76 7.67 -2.39 -0.02 1.74 16 36 H 0.16 4.94 7.89 -2.92 -0.02 4.92 16 37 H 0.11 4.66 7.83 -2.39 -0.02 4.64 16 38 H 0.10 4.17 5.20 -2.39 -0.01 4.15 16 39 H 0.12 3.62 7.57 -2.39 -0.02 3.60 16 40 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -68.19 338.87 2.94 -65.25 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.11 Total: 36.61 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.58 Total: 13.08 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.28 Total: -106.69 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.11 Total: -49.57 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.64 Total: 41.32 kcal Total: -68.19 2.94 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285051187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.813 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds